prot_D-mesarthrocarpus_Contig989.6.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig989.6.1
Unique Nameprot_D-mesarthrocarpus_Contig989.6.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length70
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.490e-8
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            YVKQPPG+EQ  PN GE+ VC+L++SLYGL  S  NW   I
Sbjct:  100 YVKQPPGYEQCGPN-GEELVCRLRKSLYGLKQSGRNWHKKI 139          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.700e-8
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            YVKQPPG+EQ  PN GE+ VC L +SLYGL  S +NW   I
Sbjct:   84 YVKQPPGYEQYGPN-GEELVCLLHKSLYGLKQSGINWHKKI 123          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TIV7_9STRA (Transposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIV7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.150e-7
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTIP--LKETGFTPFQA 65
            YVKQPPG+EQ  PN G++ VC L++SLYGL  S  NW   I    +  GF P  A
Sbjct:  162 YVKQPPGYEQCGPN-GDELVCLLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSA 215          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.830e-7
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            YVKQPPG+EQ  PN GE+ +C+L +SLYGL  S  NW   I
Sbjct:  142 YVKQPPGYEQYGPN-GEELLCRLHKSLYGLKQSGRNWHKKI 181          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.000e-7
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTIP--LKETGFTPFQA 65
            YVKQPPG+EQ   N GE+ VC+L++SLYGL  S  NW   I    +  GF P  A
Sbjct:  100 YVKQPPGYEQYGSN-GEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSA 153          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7T201_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T201_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.510e-7
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            YVKQPPG+EQ  PN GE+ VC L +SLYGL  S  NW   I
Sbjct:   17 YVKQPPGYEQYGPN-GEELVCLLHKSLYGLKQSGRNWHKKI 56          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TMS9_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.340e-6
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTIP--LKETGFTP 62
            YVKQP G+EQ  PN GE+ VC+L++SLYGL  S  NW   I    +  GF P
Sbjct:  262 YVKQPIGYEQYGPN-GEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHP 312          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.430e-6
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            Y+KQPPG+EQ   N GE+ VC+L++SLYGL  S  NW   I
Sbjct:  358 YIKQPPGYEQYGSN-GEELVCRLRKSLYGLKQSGRNWHKKI 397          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-6
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0
Query:   11 ESYVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTIP--LKETGFT 61
            E Y++QP GF   D N GE+ VC LK+SLYGL  +  NW  TI   L+E GFT
Sbjct:   38 EIYMRQPEGFRHFDIN-GEERVCLLKKSLYGLKQAPRNWNKTITAWLEEYGFT 89          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: W7TWT0_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWT0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.590e-6
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   13 YVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFNTI 53
            Y+KQP G+EQ  PN GE+ VC+L++SLYGL  S  NW   I
Sbjct:  291 YIKQPIGYEQYGPN-GEELVCRLRKSLYGLKQSGRNWHKKI 330          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA5.490e-860.98Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T9Y7_9STRA6.700e-860.98Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
W7TIV7_9STRA2.150e-750.91Transposable element n=1 Tax=Nannochloropsis gadit... [more]
W7TJI6_9STRA3.830e-758.54Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
W7TCB8_9STRA4.000e-750.91Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7T201_9STRA7.510e-760.98Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TMS9_9STRA1.340e-651.92Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T0D1_9STRA1.430e-656.10Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1SHQ1_9CHLO2.200e-652.83Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
W7TWT0_9STRA2.590e-656.10Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..62
e-value: 1.2E-7
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig989contigD-mesarthrocarpus_Contig989:20578..20787 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig989.6.1mRNA_D-mesarthrocarpus_Contig989.6.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig989 19188..21465 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig989.6.1 ID=prot_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp
MDSCEHIGPYESYVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWF
NTIPLKETGFTPFQATNVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2