mRNA_D-mesarthrocarpus_Contig989.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.180e-25 Identity = 115/433 (26.56%), Postives = 194/433 (44.80%), Query Frame = 3
Query: 186 YMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRR--TNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQARLAQRSWEGRFVAIAKTVL----LTWFGSQVLRKFILRVM*RFMKPQNSR------KNRIHNRPIKMVHYPPRLVTSVK-IVITLNFILTDL--MLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSM-KKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRL------PTEHNIVGSRWIFTRKHDGTLKSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQ--HNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLL 1412
Y L+ ++ + +P Q+G +R R L M R L+D LP+ L +G Q +NR P L TP++ L G+ L HL+A GA AFVHVETH L + WE R V +T LT + LR R R K + N+ + P+ + ++ + + + L D+ + + + F+ IH + +++ ++ + KK ++P + + + K SL + +L P HN++GS+W+F K + T K+ VA+ +NQ G D TF+PVCR+ S+R++ +A E + V +D FL A + K + +L M+ + ++ ++L +PL SD CV I ++ V++T+YVDD L+
Sbjct: 75 YCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFL-WGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVETHTRNLDSKVWESRIVNFIETPYARQDLTPSNMAGNDEVGLRSSTRVPDHAGMRSTAKVDKPSLTNQSGRDTAVKPKTIRELRRLALYTDTPLADVGHREERFDFLEYAFVANNTQIHGRSEGEKVKTIPNTCKKAMELPETKLWKAATDKEIK-SLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNME-ELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A151RE46_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RE46_CAJCA) HSP 1 Score: 114 bits (284), Expect = 2.670e-22 Identity = 111/428 (25.93%), Postives = 187/428 (43.69%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPW--DQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQ-------T*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIA 1439
I+HQ + +P Q +A+R+ R ++++ R L +LP SY N+ P+ L+G++PF++L + P LK FG+ FV T H+ +L R+ + ++ I K + + + IL +N I I H P + V ++ NF +F++ + + + +P D S + + P + +D L SLTP LP +++GS+W++ K+ DGTL K+ VA+ YNQT G+DY +TF+PV ++ ++RL+L +A NW + +D N FL + L P +L + F + F F L R Y D + I +S +I+ +YVDD +L G+D + IA
Sbjct: 679 IIHQTSCVETPQQNAVAERKHRHILNVARSLLFHSNLPNVYWSYAVLHAIHLINKLPTAVLKGKSPFEILNKKTPAYLDLKVFGSLCFVSTLTQHRNKLDPRAKKCVYLGI-KVGTKGYIALDLTTREIL-----------ISRNVIFYENIFPFHKVPDINKQVDSQVSENF---------------DFLSIDIDLPNNYPMEDDVSDSQLAAQFPHWIKAMQDELAALKMNKTWSLTP-----LPIGKSVIGSKWVYKNKYNSDGTLQRYKARLVAKGYNQTEGLDYFDTFAPVAKLTTIRLLLAIAATKNWALHQLDINNAFLHGDLTEEVYMEIPQGLAVSDPAMVCKLHKSIYGLKQASRQWFAKLSTFLFNLGY-----RQSCY----DHSLFIKKFNSKSIIILVYVDDLILAGDDAKEIA 1065
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438FT52_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT52_VITVI) HSP 1 Score: 112 bits (281), Expect = 6.230e-22 Identity = 112/439 (25.51%), Postives = 198/439 (45.10%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVA-IAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHY-----PPRLVTSVKIVITLNFILTDLMLKTYIIFQ---DEFINRPLMIHSQFP-WDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSG--KVIMTIYVDDNLLTGNDPELIAVIK 1448
IVHQ TAPYSP Q G++KR+ R +M+M R L + LPK L + NR P+K ++ +TP + +G P + HLK FG+ ++HV + + +L +R+ +G FV +A++ + ++ I R + + +N N +K VH P L +++ I + + T ++ + R ++H + + + + K + NG +K + LP N +G +W+F K DG++ K+ V + + Q AG+DY +TF+PV R ++RL+L LA + W V H+D + FL Q K + L W + L+Q + S ++ L L ++ ++++++YVDD L+TG++ +L+A K
Sbjct: 607 IVHQLTAPYSPQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYVAESKGYRIYSLSRMKIVISRDV-------HFDENSYWNWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHVEPTCYTEAARFLEWIEAMKAEIDAIER---NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLG-------FRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTGSNVKLLADFK 1021
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0VIM8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VIM8_9ASPA) HSP 1 Score: 111 bits (278), Expect = 1.160e-21 Identity = 128/476 (26.89%), Postives = 202/476 (42.44%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQC-RRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETH-QARLAQRSWEGRFVAIAKTVL-LTWFGSQVLRKFILRVM*----RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQ---------RDGGGLLNGKYKRSLTPFDIVRLPT--------EH---------------------------NIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*E---LCQATSWLRTK*PQYRGRL------CMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELI 1436
I HQ+ PY+ Q G+A+R+ R +++ R L + P L NR P+ ++ +TPF++L ++P THLK FG F ++ + +++L+ S FV A F R F+ R + +F S + +N + PP L+ VIT + L ++ +HS FP I+ + + P VP++ R G+L K LT I PT EH NI+G +W + K+ DGTL K+ VA YNQ GIDY ETFSPV +I ++R++L+LA + W + +D +N FL H + E + Q ++ + P Y +L Q K+ FE++ L + SD +LI + + KV + IYVDD ++TGN+ +I
Sbjct: 182 IFHQYMCPYTSAQNGVAERKNRHILETIRSLLIQSNTPHTLWVEALHTAIHLINRLPTVTIQYKTPFEMLYQKLPSYTHLKTFGCLCFPWLKPYSKSKLSPLSIPCVFVGYALNQKGFRCFDPNTQRIFVSRHVIFNETKFPFQDQSLQTHKNNHRVPENQIPPLLLVPTSSVITAGNPTNNSNLAIP--------SQVTQLHSNFPNSSISPTETSQAP-SVPVKNLRSHKMQTRSQAGILKPKPVFDLTHQVITPDPTSYKEAVKHEHWRQAMSHEYQALQSQGTWTLVPPTDNQNILGCKWTYRTKYKSDGTLARHKARLVALGYNQEFGIDYIETFSPVAKITTVRVLLILALHHQWAIHQLDVSNAFL--HGELSETVFMKQPIGFVDNQHPTYVCKLNKALYGLKQAPRKW-------FEMLI-GFLHQLEFTTSHSDPSLLIYRKDTSKVYVLIYVDDIIVTGNNSSVI 638
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438GRE0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GRE0_VITVI) HSP 1 Score: 111 bits (278), Expect = 1.220e-21 Identity = 128/485 (26.39%), Postives = 212/485 (43.71%), Query Frame = 3
Query: 168 QQSPSRYMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPK--QQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHL-----KAFGAPAFVHV-ETHQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSR-KNRIHNR-----------------PIKMV-HYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDE-----FINRPL-----MIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKV-IMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLK 1478
Q + ++ + IVH + +P Q G+A+R+ R L+++ R + ++PK L +G NR PS+ L+ +TP Q L P + K FG FVH+ + H++ L RS + F+ + S V RKF + F + Q KN I PI H PP + ++ DL K +I Q+E F+N+P+ +I + F + TS + FK P + +++ T ++I LP VG +WIFT K+ DG + K+ VA+ + Q+ GIDY ETF+PV ++ ++R++L LA +W + +D N FL + L T K + R L + W F + + ++ SD + + H GK+ I+ +YVD+ +LTG+ E I ++K+ K+F +K
Sbjct: 289 QMTVGEFLAQEGIVHLSSCVDTPQQNGIAERKNRHLLEVARSLMFSMNVPK-LFWGQAVLTAAYLINRMPSRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCSVFVHINQQHRSELDPRSLKCIFLGYSSNQKGYKCYSSVTRKFYNSMDVTFFETQPYYPKNDIQGENSTQEYQFWDLESFSESPITTENHIPPESFNQPESIV-------DLWDKEHI--QEERRKEHFLNKPMRQNRVLIQANFQHHRDTSSSEYSEAFKYPKWKAAVDEEVRALEKNGT-WEITDLPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPAGLETTSNFNKVCRLRKSLYGLKQSPRAWFERFTKVVKGYGFIQ------CQSDHTLFVKHFPEGKLAIIIVYVDNIILTGDHEEKIDLLKKLLTKEFEIK 756
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A5BMR0_VITVI (Uncharacterized protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BMR0_VITVI) HSP 1 Score: 112 bits (279), Expect = 1.260e-21 Identity = 110/438 (25.11%), Postives = 195/438 (44.52%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHY-----PPRLVTSVKIVITLNFILTDLMLKTYIIFQ---DEFINRPLMIHSQFP-WDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSG--KVIMTIYVDDNLLTGNDPELIAVIK 1448
IVHQ TAPYSP Q G+++R+ + +M+M R L + LPK L + NR P+K ++ +TP + +G P + HLK FG+ ++HV + + +L +R+ +G FV A S K ++ + + +N N +K VH P L +++ I + + T ++ + R ++H++ + + + K + NG +K + LP N +G +W+F K DG++ K+ V + + Q AG+DY +TF+PV R ++RL+L LA + W V H+D + FL Q K + L W + L+Q + S ++ L L ++ ++++++YVDD L+TG++ +L+A K
Sbjct: 681 IVHQLTAPYSPQQNGVSERKNKTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIKAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVI------SRDVHFDENSYWNWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEIDAIER---NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLG-------FRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTGSNVKLLADFK 1095
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2K3NH55_TRIPR (Putative copia-like retrotransposable element n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NH55_TRIPR) HSP 1 Score: 109 bits (273), Expect = 4.930e-21 Identity = 108/448 (24.11%), Postives = 204/448 (45.54%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHV-ETHQARLAQRSWEGRFVA---IAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKM-----VHYPP----RLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLKTSVK 1490
I HQ TAPY+P Q G+++R+ R +MDM R L LPK L + NR P++ L+ +TPF+ G P L K FG + HV + + +L +++ G F+ I+K + F Q + + R + FM+ + + N+ + + + PP RLV+ + + +++ + ++F+ ++ W L +M++ + +++ T +++V P + ++G +W+F K DG++ K+ V + Y+Q GIDY +TF+PV R ++RL+L + + W V HMD + FL + K + R L + + + + L+ LS + + + H + +I+++YVDD L+TG++ L+ K+ +K+ F T ++
Sbjct: 600 IEHQLTAPYTPQQNGVSERKNRSIMDMVRCMLHQKELPKKLWAEAASTAVFIQNRLPTRALQNQTPFEAWFGFKPSLDFFKVFGCLCYSHVPQVKRDKLDKKAEPGIFIGYSTISKAYKI--FQPQTGKLLVSRDV-HFMENEKWSWSDPKNKNVALEFQDTIDDPPVRGTRLVSDI-------YQRSNIAVCNIVVFEPSSFEEAA---TEEKW-----LAAMQEELSM-------------IEKNQT-WELVPRPRDRKVIGVKWVFRTKFNPDGSINKHKARLVVKGYSQIFGIDYSDTFAPVARQDTIRLLLAIVAQKGWQVFHMDVKSAFLNGFLQEEIYVEQPEGFSVKGQEDRVYLLKKALYGLKQAPRVWYNRINDHLLQLGFQKSLS-EATLYVKHVGADILIISLYVDDLLVTGSNISLVEEFKQ-EMKEVFEMTDLE 1013
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0XGI6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XGI6_9ASPA) HSP 1 Score: 109 bits (273), Expect = 5.670e-21 Identity = 113/441 (25.62%), Postives = 187/441 (42.40%), Query Frame = 3
Query: 183 RYMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRRT---NRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLM-------IHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIF-TRKHDG----TLKSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLS-------SDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIA 1439
+++++H I HQ + PY+P Q GMA+R+ R +++ TR+ L + S+P Y P T NR PS ++ +P++ L P HL+ FG F H Q A +V L + + K + K SR + + +P +IT N + + +F ++ + P + F W Q +M F +Q+ G + +V P+ I+G +W + T++H T K+ VA +Q GIDY+ETFSPV ++ ++R++L +A NNWPV +D N FL H + E+ T + + +C+ K ++ + Y LS SD +LI H+S + + +YVDD L+TGN E I+
Sbjct: 570 QFLIQHGIRHQISCPYTPEQNGMAERKHRHVIETTRKLLFNSSVP--YKYWPDAVLTATYLINRMPSPTIKNMSPYERLYHRKPTYGHLRTFGCECFPLTPNHLRHKLQPK-------AASSVFLGYSDAYKGYKCLDLAT---NKIHISRHTTFNEQSFPFSKHP---------MITRNKSGSLKPRQRLNLFHEQVSSIPASDPTTFNEANKHFEWRQ-----AMAHEF-FALQKQG-------------TWQLVSKPSNAPILGCKWTYRTKRHANGSIVTYKARLVALGNHQEFGIDYNETFSPVAKLPTIRILLTVALNNNWPVQQLDVANAFL--HGNLSEVVYMTQPKGFEDSSHPEHVCLLK--KAIYG----LKQAPRQWYNTFTSYLLSIGFTHSKSDPSLLIQHQSDTTIFLLMYVDDILITGNKSEAIS 962
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438F3A5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F3A5_VITVI) HSP 1 Score: 109 bits (272), Expect = 5.980e-21 Identity = 91/318 (28.62%), Postives = 153/318 (48.11%), Query Frame = 3
Query: 204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMD 1136
IVHQ TAPYSP Q G+++R+ R +M+M R L + LPK L + NR P+K ++ +TP + +G P + HLK FG+ ++HV + + +L +R+ +G FV A S K ++ + + +N N +K VH + S+ L + +++ I++ E P + + + +MK ++R NG +K + LP N +G +W+F K DG++ K+ V + + Q AG+DY +TF+PV R ++RL+L LA + W V H+D
Sbjct: 541 IVHQLTAPYSPQQNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSIQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVI------SRDVHFDENSYWNWDLKKVHKCDQTTPSI-----LEPAIESTIIEGAILYNAE----PTCYTEAARF--LEWIEAMKAEIDA-IER------NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLD 827
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0W0T0_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W0T0_9ASPA) HSP 1 Score: 108 bits (269), Expect = 1.340e-20 Identity = 130/486 (26.75%), Postives = 209/486 (43.00%), Query Frame = 3
Query: 198 HCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRRT-NRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQA-RLAQRSWEGRFVAIAKTVL-LTWFGSQVLRKFILRVM*RF---MKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLN-------------------------------FILTDLMLKTYIIFQDEFI--NRPLMIH-------SQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRA--HRPV*ELCQATSWLRTK*PQYRGRL------CMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLK 1478
H I HQF+ P +P Q G+++R+ R L++ TR L LP Q NR P+ L + PF +L G P+ HLK+FG F ++ +LA RS F+ + + +Q + I R + RF ++P + N P + PP L+T I T N + T+ +L T+ + +RP ++ S FP T+ S ++ M + LL + SLTP LP ++G RW + K DGT+ K+ VAQ + Q G++Y ETFSPV +I ++RL+L++A ++WP+ D N FL H V + Q ++ P + RL Q ++ + + H + R +D +L+ +R++ ++ + IYVDD LLTGND +I + + +F LK
Sbjct: 130 HGIHHQFSCPNTPQQNGVSERKHRHLLETTRTLLHAAHLPFRFWAEALQTSNYLINRLPTSALNSQIPFILLHGRPPQYDHLKSFGCLCFPWLQPQSPHKLAPRSSPCIFLGYSSQHKGYRCYNTQTHKLHISRHV-RFYEHLQPYKESATNLPNPPSN-TYIPPMLLTPTSIHQTSNSTQSSSINASSNTTEPHYPTLPIPTPSTETQHLPTNTILPTHSMATRSKTGHSRPKKVYDLLAVADSAFPPTSYTA-ASKDSSWQAAMSEEIEALLK-QQTWSLTP-----LPPGRPVLGCRWTYKIKTNPDGTVNRYKARLVAQGFTQQYGVNYKETFSPVAKIPTIRLLLIIAIHHHWPLLQFDVANAFLHGDLHDEV-YMKQPQGFVDRDRPNHVCRLHKALYGLKQAPRQWFRKL---TDFLLHFGFQFSR-----ADPSLLVYNRTTTQLYLLIYVDDLLLTGNDSSVINTLLQQLQTNFDLK 597 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig989.6.1 >prot_D-mesarthrocarpus_Contig989.6.1 ID=prot_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp MDSCEHIGPYESYVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWFback to top mRNA from alignment at D-mesarthrocarpus_Contig989:19188..21465+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig989.6.1 ID=mRNA_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig989:19188..21465+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig989:19188..21465+ >mRNA_D-mesarthrocarpus_Contig989.6.1 ID=mRNA_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig989:19188..21465+ (Discosporangium mesarthrocarpum MT17_79)back to top |