mRNA_D-mesarthrocarpus_Contig989.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig989.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig989.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.180e-25
Identity = 115/433 (26.56%), Postives = 194/433 (44.80%), Query Frame = 3
Query:  186 YMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRR--TNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQARLAQRSWEGRFVAIAKTVL----LTWFGSQVLRKFILRVM*RFMKPQNSR------KNRIHNRPIKMVHYPPRLVTSVK-IVITLNFILTDL--MLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSM-KKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRL------PTEHNIVGSRWIFTRKHDGTLKSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQ--HNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLL 1412
            Y L+     ++ +  +P Q+G  +R  R L  M R  L+D  LP+ L +G   Q     +NR P   L   TP++ L G+   L HL+A GA AFVHVETH   L  + WE R V   +T      LT        +  LR   R       R      K  + N+  +     P+ +  ++ + +  +  L D+    + +   +  F+     IH +   +++ ++ +  KK  ++P  +      + + K SL    + +L      P  HN++GS+W+F  K + T K+  VA+ +NQ  G D   TF+PVCR+ S+R++  +A E +  V  +D    FL A        +       K  +   +L M+             + ++   ++L     +PL SD CV I   ++  V++T+YVDD L+
Sbjct:   75 YCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFL-WGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHVETHTRNLDSKVWESRIVNFIETPYARQDLTPSNMAGNDEVGLRSSTRVPDHAGMRSTAKVDKPSLTNQSGRDTAVKPKTIRELRRLALYTDTPLADVGHREERFDFLEYAFVANNTQIHGRSEGEKVKTIPNTCKKAMELPETKLWKAATDKEIK-SLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNME-ELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A151RE46_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RE46_CAJCA)

HSP 1 Score: 114 bits (284), Expect = 2.670e-22
Identity = 111/428 (25.93%), Postives = 187/428 (43.69%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPW--DQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQ-------T*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIA 1439
            I+HQ +   +P Q  +A+R+ R ++++ R  L   +LP    SY         N+ P+  L+G++PF++L  + P    LK FG+  FV   T H+ +L  R+ +  ++ I K     +    +  + IL             +N I    I   H  P +   V   ++ NF               +F++  + + + +P   D   S  + + P  +   +D    L      SLTP     LP   +++GS+W++  K+  DGTL   K+  VA+ YNQT G+DY +TF+PV ++ ++RL+L +A   NW +  +D  N FL          +    L    P    +L          +   F   + F F L       R   Y    D  + I   +S  +I+ +YVDD +L G+D + IA
Sbjct:  679 IIHQTSCVETPQQNAVAERKHRHILNVARSLLFHSNLPNVYWSYAVLHAIHLINKLPTAVLKGKSPFEILNKKTPAYLDLKVFGSLCFVSTLTQHRNKLDPRAKKCVYLGI-KVGTKGYIALDLTTREIL-----------ISRNVIFYENIFPFHKVPDINKQVDSQVSENF---------------DFLSIDIDLPNNYPMEDDVSDSQLAAQFPHWIKAMQDELAALKMNKTWSLTP-----LPIGKSVIGSKWVYKNKYNSDGTLQRYKARLVAKGYNQTEGLDYFDTFAPVAKLTTIRLLLAIAATKNWALHQLDINNAFLHGDLTEEVYMEIPQGLAVSDPAMVCKLHKSIYGLKQASRQWFAKLSTFLFNLGY-----RQSCY----DHSLFIKKFNSKSIIILVYVDDLILAGDDAKEIA 1065          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438FT52_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT52_VITVI)

HSP 1 Score: 112 bits (281), Expect = 6.230e-22
Identity = 112/439 (25.51%), Postives = 198/439 (45.10%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVA-IAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHY-----PPRLVTSVKIVITLNFILTDLMLKTYIIFQ---DEFINRPLMIHSQFP-WDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSG--KVIMTIYVDDNLLTGNDPELIAVIK 1448
            IVHQ TAPYSP Q G++KR+ R +M+M R  L +  LPK L +          NR P+K ++ +TP +  +G  P + HLK FG+  ++HV +  + +L +R+ +G FV  +A++     +    ++  I R +       +  +N   N  +K VH      P  L  +++  I    +  +    T ++      +   R  ++H +   + +        +  K  +        NG +K       +  LP   N +G +W+F  K   DG++   K+  V + + Q AG+DY +TF+PV R  ++RL+L LA +  W V H+D  + FL          Q            K  +    L         W +     L+Q         +  S ++  L L ++    ++++++YVDD L+TG++ +L+A  K
Sbjct:  607 IVHQLTAPYSPQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYVAESKGYRIYSLSRMKIVISRDV-------HFDENSYWNWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHVEPTCYTEAARFLEWIEAMKAEIDAIER---NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLG-------FRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTGSNVKLLADFK 1021          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0VIM8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VIM8_9ASPA)

HSP 1 Score: 111 bits (278), Expect = 1.160e-21
Identity = 128/476 (26.89%), Postives = 202/476 (42.44%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQC-RRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETH-QARLAQRSWEGRFVAIAKTVL-LTWFGSQVLRKFILRVM*----RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQ---------RDGGGLLNGKYKRSLTPFDIVRLPT--------EH---------------------------NIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*E---LCQATSWLRTK*PQYRGRL------CMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELI 1436
            I HQ+  PY+  Q G+A+R+ R +++  R  L   + P  L            NR P+  ++ +TPF++L  ++P  THLK FG   F  ++ + +++L+  S    FV  A        F     R F+ R +     +F     S +   +N  +     PP L+     VIT      +  L           ++   +HS FP   I+   + + P  VP++         R   G+L  K    LT   I   PT        EH                           NI+G +W +  K+  DGTL   K+  VA  YNQ  GIDY ETFSPV +I ++R++L+LA  + W +  +D +N FL  H  + E   + Q   ++  + P Y  +L        Q   K+       FE++    L +       SD  +LI  + + KV + IYVDD ++TGN+  +I
Sbjct:  182 IFHQYMCPYTSAQNGVAERKNRHILETIRSLLIQSNTPHTLWVEALHTAIHLINRLPTVTIQYKTPFEMLYQKLPSYTHLKTFGCLCFPWLKPYSKSKLSPLSIPCVFVGYALNQKGFRCFDPNTQRIFVSRHVIFNETKFPFQDQSLQTHKNNHRVPENQIPPLLLVPTSSVITAGNPTNNSNLAIP--------SQVTQLHSNFPNSSISPTETSQAP-SVPVKNLRSHKMQTRSQAGILKPKPVFDLTHQVITPDPTSYKEAVKHEHWRQAMSHEYQALQSQGTWTLVPPTDNQNILGCKWTYRTKYKSDGTLARHKARLVALGYNQEFGIDYIETFSPVAKITTVRVLLILALHHQWAIHQLDVSNAFL--HGELSETVFMKQPIGFVDNQHPTYVCKLNKALYGLKQAPRKW-------FEMLI-GFLHQLEFTTSHSDPSLLIYRKDTSKVYVLIYVDDIIVTGNNSSVI 638          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438GRE0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GRE0_VITVI)

HSP 1 Score: 111 bits (278), Expect = 1.220e-21
Identity = 128/485 (26.39%), Postives = 212/485 (43.71%), Query Frame = 3
Query:  168 QQSPSRYMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPK--QQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHL-----KAFGAPAFVHV-ETHQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSR-KNRIHNR-----------------PIKMV-HYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDE-----FINRPL-----MIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKV-IMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLK 1478
            Q +   ++ +  IVH  +   +P Q G+A+R+ R L+++ R  +   ++PK L +G          NR PS+ L+ +TP Q L    P    +     K FG   FVH+ + H++ L  RS +  F+  +         S V RKF   +   F + Q    KN I                    PI    H PP      + ++       DL  K +I  Q+E     F+N+P+     +I + F   + TS     + FK P  +          +++ T ++I  LP     VG +WIFT K+  DG +   K+  VA+ + Q+ GIDY ETF+PV ++ ++R++L LA   +W +  +D  N FL             + L T     K  + R  L     +   W   F   +  +  ++        SD  + + H   GK+ I+ +YVD+ +LTG+  E I ++K+   K+F +K
Sbjct:  289 QMTVGEFLAQEGIVHLSSCVDTPQQNGIAERKNRHLLEVARSLMFSMNVPK-LFWGQAVLTAAYLINRMPSRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCSVFVHINQQHRSELDPRSLKCIFLGYSSNQKGYKCYSSVTRKFYNSMDVTFFETQPYYPKNDIQGENSTQEYQFWDLESFSESPITTENHIPPESFNQPESIV-------DLWDKEHI--QEERRKEHFLNKPMRQNRVLIQANFQHHRDTSSSEYSEAFKYPKWKAAVDEEVRALEKNGT-WEITDLPRGKKPVGCKWIFTVKYKADGNVDRYKARLVAKGFTQSYGIDYQETFAPVAKLNTVRVLLSLAANLDWSLHQLDVKNAFLNGDLEEEVYMDIPAGLETTSNFNKVCRLRKSLYGLKQSPRAWFERFTKVVKGYGFIQ------CQSDHTLFVKHFPEGKLAIIIVYVDNIILTGDHEEKIDLLKKLLTKEFEIK 756          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A5BMR0_VITVI (Uncharacterized protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BMR0_VITVI)

HSP 1 Score: 112 bits (279), Expect = 1.260e-21
Identity = 110/438 (25.11%), Postives = 195/438 (44.52%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHY-----PPRLVTSVKIVITLNFILTDLMLKTYIIFQ---DEFINRPLMIHSQFP-WDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRT-----K*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSG--KVIMTIYVDDNLLTGNDPELIAVIK 1448
            IVHQ TAPYSP Q G+++R+ + +M+M R  L +  LPK L +          NR P+K ++ +TP +  +G  P + HLK FG+  ++HV +  + +L +R+ +G FV  A         S    K ++       +  +  +N   N  +K VH      P  L  +++  I    +  +    T ++      +   R  ++H++   + +        +  K  +        NG +K       +  LP   N +G +W+F  K   DG++   K+  V + + Q AG+DY +TF+PV R  ++RL+L LA +  W V H+D  + FL          Q            K  +    L         W +     L+Q         +  S ++  L L ++    ++++++YVDD L+TG++ +L+A  K
Sbjct:  681 IVHQLTAPYSPQQNGVSERKNKTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIKAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVI------SRDVHFDENSYWNWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHAEPTCYTEAARFLEWIEAMKAEIDAIER---NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLG-------FRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTGSNVKLLADFK 1095          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2K3NH55_TRIPR (Putative copia-like retrotransposable element n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NH55_TRIPR)

HSP 1 Score: 109 bits (273), Expect = 4.930e-21
Identity = 108/448 (24.11%), Postives = 204/448 (45.54%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHV-ETHQARLAQRSWEGRFVA---IAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKM-----VHYPP----RLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLKTSVK 1490
            I HQ TAPY+P Q G+++R+ R +MDM R  L    LPK L +          NR P++ L+ +TPF+   G  P L   K FG   + HV +  + +L +++  G F+    I+K   +  F  Q  +  + R +  FM+ +    +   N+ + +     +  PP    RLV+ +       +  +++ +   ++F+           ++  W     L +M++   +              +++ T +++V  P +  ++G +W+F  K   DG++   K+  V + Y+Q  GIDY +TF+PV R  ++RL+L +  +  W V HMD  + FL          +       K  + R  L  +            +  +  + L+      LS +  + + H  +  +I+++YVDD L+TG++  L+   K+  +K+ F  T ++
Sbjct:  600 IEHQLTAPYTPQQNGVSERKNRSIMDMVRCMLHQKELPKKLWAEAASTAVFIQNRLPTRALQNQTPFEAWFGFKPSLDFFKVFGCLCYSHVPQVKRDKLDKKAEPGIFIGYSTISKAYKI--FQPQTGKLLVSRDV-HFMENEKWSWSDPKNKNVALEFQDTIDDPPVRGTRLVSDI-------YQRSNIAVCNIVVFEPSSFEEAA---TEEKW-----LAAMQEELSM-------------IEKNQT-WELVPRPRDRKVIGVKWVFRTKFNPDGSINKHKARLVVKGYSQIFGIDYSDTFAPVARQDTIRLLLAIVAQKGWQVFHMDVKSAFLNGFLQEEIYVEQPEGFSVKGQEDRVYLLKKALYGLKQAPRVWYNRINDHLLQLGFQKSLS-EATLYVKHVGADILIISLYVDDLLVTGSNISLVEEFKQ-EMKEVFEMTDLE 1013          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0XGI6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XGI6_9ASPA)

HSP 1 Score: 109 bits (273), Expect = 5.670e-21
Identity = 113/441 (25.62%), Postives = 187/441 (42.40%), Query Frame = 3
Query:  183 RYMLKHCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRRT---NRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLM-------IHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIF-TRKHDG----TLKSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRAHRPV*ELCQATSWLRTK*PQYRGRLCMQT*TKFVWTT*F*FELVQHNTLERDRIYPLS-------SDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIA 1439
            +++++H I HQ + PY+P Q GMA+R+ R +++ TR+ L + S+P    Y P      T   NR PS  ++  +P++ L    P   HL+ FG   F     H     Q          A +V L +  +    K +        K   SR    + +      +P         +IT N   +    +   +F ++  + P          +  F W Q     +M   F   +Q+ G              + +V  P+   I+G +W + T++H      T K+  VA   +Q  GIDY+ETFSPV ++ ++R++L +A  NNWPV  +D  N FL  H  + E+   T     +   +   +C+    K ++      +            Y LS       SD  +LI H+S   + + +YVDD L+TGN  E I+
Sbjct:  570 QFLIQHGIRHQISCPYTPEQNGMAERKHRHVIETTRKLLFNSSVP--YKYWPDAVLTATYLINRMPSPTIKNMSPYERLYHRKPTYGHLRTFGCECFPLTPNHLRHKLQPK-------AASSVFLGYSDAYKGYKCLDLAT---NKIHISRHTTFNEQSFPFSKHP---------MITRNKSGSLKPRQRLNLFHEQVSSIPASDPTTFNEANKHFEWRQ-----AMAHEF-FALQKQG-------------TWQLVSKPSNAPILGCKWTYRTKRHANGSIVTYKARLVALGNHQEFGIDYNETFSPVAKLPTIRILLTVALNNNWPVQQLDVANAFL--HGNLSEVVYMTQPKGFEDSSHPEHVCLLK--KAIYG----LKQAPRQWYNTFTSYLLSIGFTHSKSDPSLLIQHQSDTTIFLLMYVDDILITGNKSEAIS 962          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A438F3A5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F3A5_VITVI)

HSP 1 Score: 109 bits (272), Expect = 5.980e-21
Identity = 91/318 (28.62%), Postives = 153/318 (48.11%), Query Frame = 3
Query:  204 IVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDL-SYGPKQQCRRTNRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVET-HQARLAQRSWEGRFVAIAKTVLLTWFGSQVLRKFILRVM*RFMKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLNFILTDLMLKTYIIFQDEFINRPLMIHSQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMD 1136
            IVHQ TAPYSP Q G+++R+ R +M+M R  L +  LPK L +          NR P+K ++ +TP +  +G  P + HLK FG+  ++HV +  + +L +R+ +G FV  A         S    K ++       +  +  +N   N  +K VH   +   S+     L   +   +++  I++  E    P        +  +  + +MK      ++R      NG +K       +  LP   N +G +W+F  K   DG++   K+  V + + Q AG+DY +TF+PV R  ++RL+L LA +  W V H+D
Sbjct:  541 IVHQLTAPYSPQQNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSIQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVI------SRDVHFDENSYWNWDLKKVHKCDQTTPSI-----LEPAIESTIIEGAILYNAE----PTCYTEAARF--LEWIEAMKAEIDA-IER------NGTWK-------LTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLD 827          
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Match: A0A2I0W0T0_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W0T0_9ASPA)

HSP 1 Score: 108 bits (269), Expect = 1.340e-20
Identity = 130/486 (26.75%), Postives = 209/486 (43.00%), Query Frame = 3
Query:  198 HCIVHQFTAPYSPHQIGMAKREWRVLMDMTRRFLSDWSLPKDLSYGPKQQCRRT-NRSPSKFLRGRTPFQVLAGEVPKLTHLKAFGAPAFVHVETHQA-RLAQRSWEGRFVAIAKTVL-LTWFGSQVLRKFILRVM*RF---MKPQNSRKNRIHNRPIKMVHYPPRLVTSVKIVITLN-------------------------------FILTDLMLKTYIIFQDEFI--NRPLMIH-------SQFPWDQITSLCSMKKPFKVPMQRDGGGLLNGKYKRSLTPFDIVRLPTEHNIVGSRWIFTRKH--DGTL---KSCWVAQAYNQTAGIDYDETFSPVCRIASLRLILVLANENNWPVCHMDATNGFLRA--HRPV*ELCQATSWLRTK*PQYRGRL------CMQT*TKFVWTT*F*FELVQHNTLERDRIYPLSSDQCVLILHRSSGKVIMTIYVDDNLLTGNDPELIAVIKRPSIKDFFLK 1478
            H I HQF+ P +P Q G+++R+ R L++ TR  L    LP        Q      NR P+  L  + PF +L G  P+  HLK+FG   F  ++     +LA RS    F+  +        + +Q  +  I R + RF   ++P       + N P    + PP L+T   I  T N                                + T+ +L T+ +        +RP  ++       S FP    T+  S    ++  M  +   LL  +   SLTP     LP    ++G RW +  K   DGT+   K+  VAQ + Q  G++Y ETFSPV +I ++RL+L++A  ++WP+   D  N FL    H  V  + Q   ++    P +  RL        Q   ++        + + H   +  R     +D  +L+ +R++ ++ + IYVDD LLTGND  +I  + +    +F LK
Sbjct:  130 HGIHHQFSCPNTPQQNGVSERKHRHLLETTRTLLHAAHLPFRFWAEALQTSNYLINRLPTSALNSQIPFILLHGRPPQYDHLKSFGCLCFPWLQPQSPHKLAPRSSPCIFLGYSSQHKGYRCYNTQTHKLHISRHV-RFYEHLQPYKESATNLPNPPSN-TYIPPMLLTPTSIHQTSNSTQSSSINASSNTTEPHYPTLPIPTPSTETQHLPTNTILPTHSMATRSKTGHSRPKKVYDLLAVADSAFPPTSYTA-ASKDSSWQAAMSEEIEALLK-QQTWSLTP-----LPPGRPVLGCRWTYKIKTNPDGTVNRYKARLVAQGFTQQYGVNYKETFSPVAKIPTIRLLLIIAIHHHWPLLQFDVANAFLHGDLHDEV-YMKQPQGFVDRDRPNHVCRLHKALYGLKQAPRQWFRKL---TDFLLHFGFQFSR-----ADPSLLVYNRTTTQLYLLIYVDDLLLTGNDSSVINTLLQQLQTNFDLK 597          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig989.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE8.180e-2526.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A151RE46_CAJCA2.670e-2225.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FT52_VITVI6.230e-2225.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0VIM8_9ASPA1.160e-2126.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GRE0_VITVI1.220e-2126.39Retrovirus-related Pol polyprotein from transposon... [more]
A5BMR0_VITVI1.260e-2125.11Uncharacterized protein (Fragment) n=1 Tax=Vitis v... [more]
A0A2K3NH55_TRIPR4.930e-2124.11Putative copia-like retrotransposable element n=1 ... [more]
A0A2I0XGI6_9ASPA5.670e-2125.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A438F3A5_VITVI5.980e-2128.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0W0T0_9ASPA1.340e-2026.75Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig989contigD-mesarthrocarpus_Contig989:19188..21465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4081.Solyc00g075040.1.1
PFAMsRVT_2,Retrotran_gag_3
Model size2031
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.08e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3GHHW@35493|Streptophyta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size210
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.337645-UTR-D-mesarthrocarpus_Contig989:19187..199301680791139.337645-UTR-D-mesarthrocarpus_Contig989:19187..19930Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig989 19188..19930 +
1680791139.3531501-UTR-D-mesarthrocarpus_Contig989:20177..205771680791139.3531501-UTR-D-mesarthrocarpus_Contig989:20177..20577Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig989 20178..20577 +
1680791139.3824353-UTR-D-mesarthrocarpus_Contig989:20787..214651680791139.3824353-UTR-D-mesarthrocarpus_Contig989:20787..21465Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig989 20788..21465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791139.3665805-CDS-D-mesarthrocarpus_Contig989:20577..207871680791139.3665805-CDS-D-mesarthrocarpus_Contig989:20577..20787Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig989 20578..20787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig989.6.1prot_D-mesarthrocarpus_Contig989.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig989 20578..20787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig989.6.1

>prot_D-mesarthrocarpus_Contig989.6.1 ID=prot_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp
MDSCEHIGPYESYVKQPPGFEQSDPNTGEDYVCKLKRSLYGLHNSSLNWF
NTIPLKETGFTPFQATNVS*
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mRNA from alignment at D-mesarthrocarpus_Contig989:19188..21465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig989.6.1 ID=mRNA_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig989:19188..21465+ (Discosporangium mesarthrocarpum MT17_79)
TCGTATATCTTAAAGCTCACTGATCACTATACGCGACTGAAGGAAGCATA CTTCCTGACACAAAAGTCAGAGACCCCCAGATATTTATGCCAGTACCCAT CTGAATTCGCCAAACATGCGAACCTTCGTCTACAGGTCCTGAGCACTGAT AACGGACGAGAATTCACCAACAAAGCCCATCAAGGTATATGCTCAAACAT TGCATCGTGCATCAGTTCACCGCACCATACTCCCCACATCAAATCGGTAT GGCGAAGAGAGAGTGGCGTGTGTTGATGGATATGACTCGACGTTTCCTTT CTGACTGGTCGTTGCCGAAAGATCTATCTTATGGCCCGAAGCAGCAGTGC AGACGGACGAACAGATCCCCAAGCAAGTTTCTGCGGGGACGCACCCCCTT TCAAGTTTTGGCGGGAGAAGTCCCCAAACTTACACATCTGAAGGCATTCG GAGCACCTGCTTTCGTGCATGTAGAAACGCACCAAGCAAGGTTGGCTCAG AGAAGCTGGGAAGGCAGATTTGTTGCTATAGCCAAAACAGTTCTACTTAC GTGGTTTGGAAGCCAGGTACTACGCAAGTTTATACTTCGCGTAATGTGAC GGTTCATGAAACCCCAAAACAGTCGCAAGAATCGAATACACAACAGGCCC ATCAAAATGGTCCACTACCCACCGAGACTGGTCACCTCGGTGAAGATAGT GATCACTTTGAACTTTATTCTGACAGATCTGATGTTGAAGACGGTCATGA ATCTTCGACCATGCGCTCTTTCGATTTATTAGAGTCACATGAAGAGGATG TCCCGGAGCAACAGTTACCGGATGATGATCTTTCACCCGATGTGTCACAC CAAGAGCACTCACCAGATGCCATTCTATTTAATCATGCCCCAACAGAGGC TAATCCCCGGTCTGATGCGAATGAGCCTGGCACGCAATCTATGAAGCTTC AACGGGAACTATACCACCTTAGTTATTACTTACTTCGAAGTATATAATAT TCCAGGACGAGTTTATAAATCGTCCCCTGATGATTCATTCCCAGTTCCCA TGGGACCAGATAACATCCCTTTGTTCTATGAAGAAGCCATTCAAAGTTCC GATGCAGAGGGATGGCGGAGGGCTATTAAACGGGAAATACAAAAGGAGTT TGACACCCTTCGATATAGTGCGACTCCCCACAGAACACAACATCGTGGGT TCGAGATGGATATTTACGAGAAAACATGATGGCACCCTAAAATCATGTTG GGTGGCCCAAGCCTATAATCAGACAGCTGGTATCGACTATGACGAAACGT TCAGCCCTGTTTGCCGCATTGCAAGTCTGAGGTTGATTCTGGTACTTGCC AACGAAAACAACTGGCCTGTTTGTCATATGGACGCCACCAATGGATTCTT GCGAGCACATCGGCCCGTATGAGAGCTATGTCAAGCAACCTCCTGGCTTC GAACAAAGTGACCCCAATACAGGGGAAGATTATGTATGCAAACTTAAACG AAGTTTGTATGGACTACATAATTCTAGTTTGAACTGGTTCAACACAATAC CCTTGAAAGAGACAGGATTTACCCCCTTTCAAGCGACCAATGTGTCTTAA TCCTTCACAGGAGCTCAGGTAAGGTTATCATGACTATTTATGTCGATGAC AACCTTCTTACTGGTAATGATCCTGAGCTGATTGCTGTAATCAAACGTCC ATCCATAAAAGATTTCTTTTTGAAGACATCGGTAAAGTACAAGATACACT TGGCATTCACATAGTTCGTGACCGAGTGAATGGCCTTCTCTCTCTCCAAC AACAATATGCCCGATCCATCCTCGAGATATTTGGTATGAGTGAATGCAAT TCAACTCATCTACCGGGAGAGATCACACCTCCTGATGATCACACACCACC TCTTGACATTGACCACAAGCGCCGTTATCAACAGGTTACGGGTGCCTTTA AATATTTGCAAACTTCAGCAAGACCAGACCTCTGTTTGTCCGTCTTACAA CTTTCGCGACATACGAACGCACCCCCGAAACGACATAGATATAAAGGCGC TGCTAAACGAACTTTACGGTATTTGAAGGAACTATAAACCTTTCAATCAC ATACCAACGTGGTCATTTCAACCTCCGAGGATATGTAGATGCTGCATGCG CCTCCGATGAGAAAATAAGCAAATCCACGAGGGGATATAATTTCTTCCTC GAAAATGCCGCCCTGAGTTGGTCCTCTCAACCACAGTCTATGGTCACGAA AAATTCCACTGAGAGTGAATTAGTCAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig989:19188..21465+

>mRNA_D-mesarthrocarpus_Contig989.6.1 ID=mRNA_D-mesarthrocarpus_Contig989.6.1|Name=mRNA_D-mesarthrocarpus_Contig989.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig989:19188..21465+ (Discosporangium mesarthrocarpum MT17_79)
ATGGATTCTTGCGAGCACATCGGCCCGTATGAGAGCTATGTCAAGCAACC
TCCTGGCTTCGAACAAAGTGACCCCAATACAGGGGAAGATTATGTATGCA
AACTTAAACGAAGTTTGTATGGACTACATAATTCTAGTTTGAACTGGTTC
AACACAATACCCTTGAAAGAGACAGGATTTACCCCCTTTCAAGCGACCAA
TGTGTCTTAA
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