prot_D-mesarthrocarpus_Contig9875.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig9875.1.1
Unique Nameprot_D-mesarthrocarpus_Contig9875.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length187
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Match: A0A0B1Y030_9BACI (HTH luxR-type domain-containing protein n=12 Tax=Bacillaceae TaxID=186817 RepID=A0A0B1Y030_9BACI)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-6
Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 0 
Query:   25 VQEVREAHHEKLLLYALGLSQNMNLKHLSVDDLMQEMYVSLL-MKWPASEKGYRKKGVGYLFKILKF---DSYDALRKEKSAKRQEEV-FLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYYVLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE 186
            VQE+ + + + L+  A+  ++NM+      +D++QE+Y++L+  + P   + + K    +L K+      D + + R +K+    EE+ F+ K    V          + E +E+  K    +   +  +Y  GY+  EIA L  M +NT+G+K+ RA+ KLK++ E
Sbjct:    9 VQEIVQTYSDTLIRIAVHQTKNMS----EAEDIVQEVYMTLMKQRKPFDHEDHLK---AWLIKVTFNKCKDYFKSARMKKTVPITEEMSFIAKEEQMV----------LTEIFELNPK----ERVIVYLHYYEGYTTAEIANLLGMNVNTIGSKLRRARMKLKIILE 154
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BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Match: A0A0N8IM35_9BACI (Uncharacterized protein n=1 Tax=Lysinibacillus sp. ZYM-1 TaxID=1681184 RepID=A0A0N8IM35_9BACI)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-5
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = 0 
Query:   25 VQEVREAHHEKLLLYALGLSQNMNLKHLSVDDLMQEMYVSLL-MKWPASEKGYRKKGVGYLFKILKF---DSYDALRKEKSAKRQEEVFLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYYVLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE 186
            VQE+ + + + L+  A+  +++M+      +D++Q++Y++L+  K P     + K    +L K+      D + + R +K+    EE+  I     + L          E +E+     Q +   +  +Y  GY+  EIA L  M +NTVG+K+ RA+ KLKL+ E
Sbjct:    9 VQEIVQTYSDTLIRIAVQQTKSMS----EAEDIVQDVYMTLMKQKKPFENVDHLK---AWLIKVTFNKCKDYFKSSRVKKTVPITEEMSFIAKEEQMILS---------EIFEL----HQEERVIVYLHYYEGYTTAEIANLLEMKVNTVGSKLRRARMKLKLMLE 154
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0B1Y030_9BACI2.120e-626.95HTH luxR-type domain-containing protein n=12 Tax=B... [more]
A0A0N8IM35_9BACI1.500e-527.11Uncharacterized protein n=1 Tax=Lysinibacillus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1740.10coord: 4..115
e-value: 4.3E-6
score: 28.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 140..184
e-value: 1.7E-7
score: 32.8
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 149..181
e-value: 8.4E-8
score: 31.8
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 145..182
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 18..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9875contigD-mesarthrocarpus_Contig9875:2366..2926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9875.1.1mRNA_D-mesarthrocarpus_Contig9875.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig9875 2366..2926 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig9875.1.1 ID=prot_D-mesarthrocarpus_Contig9875.1.1|Name=mRNA_D-mesarthrocarpus_Contig9875.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=187bp
MAKNEKIMSNSTFLPSLRKKRDAFVQEVREAHHEKLLLYALGLSQNMNLK
HLSVDDLMQEMYVSLLMKWPASEKGYRKKGVGYLFKILKFDSYDALRKEK
SAKRQEEVFLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYY
VLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR013249RNA_pol_sigma70_r4_t2
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2