mRNA_D-mesarthrocarpus_Contig9875.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9875.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9875.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Match: A0A0B1Y030_9BACI (HTH luxR-type domain-containing protein n=12 Tax=Bacillaceae TaxID=186817 RepID=A0A0B1Y030_9BACI)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-6
Identity = 45/167 (26.95%), Postives = 86/167 (51.50%), Query Frame = 1 
Query:   73 VQEVREAHHEKLLLYALGLSQNMNLKHLSVDDLMQEMYVSLL-MKWPASEKGYRKKGVGYLFKILKF---DSYDALRKEKSAKRQEEV-FLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYYVLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE 558
            VQE+ + + + L+  A+  ++NM+      +D++QE+Y++L+  + P   + + K    +L K+      D + + R +K+    EE+ F+ K    V          + E +E+  K    +   +  +Y  GY+  EIA L  M +NT+G+K+ RA+ KLK++ E
Sbjct:    9 VQEIVQTYSDTLIRIAVHQTKNMS----EAEDIVQEVYMTLMKQRKPFDHEDHLK---AWLIKVTFNKCKDYFKSARMKKTVPITEEMSFIAKEEQMV----------LTEIFELNPK----ERVIVYLHYYEGYTTAEIANLLGMNVNTIGSKLRRARMKLKIILE 154
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BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Match: A0A0N8IM35_9BACI (Uncharacterized protein n=1 Tax=Lysinibacillus sp. ZYM-1 TaxID=1681184 RepID=A0A0N8IM35_9BACI)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-5
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = 1 
Query:   73 VQEVREAHHEKLLLYALGLSQNMNLKHLSVDDLMQEMYVSLL-MKWPASEKGYRKKGVGYLFKILKF---DSYDALRKEKSAKRQEEVFLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYYVLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE 558
            VQE+ + + + L+  A+  +++M+      +D++Q++Y++L+  K P     + K    +L K+      D + + R +K+    EE+  I     + L          E +E+     Q +   +  +Y  GY+  EIA L  M +NTVG+K+ RA+ KLKL+ E
Sbjct:    9 VQEIVQTYSDTLIRIAVQQTKSMS----EAEDIVQDVYMTLMKQKKPFENVDHLK---AWLIKVTFNKCKDYFKSSRVKKTVPITEEMSFIAKEEQMILS---------EIFEL----HQEERVIVYLHYYEGYTTAEIANLLEMKVNTVGSKLRRARMKLKLMLE 154
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9875.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0B1Y030_9BACI2.120e-626.95HTH luxR-type domain-containing protein n=12 Tax=B... [more]
A0A0N8IM35_9BACI1.500e-527.11Uncharacterized protein n=1 Tax=Lysinibacillus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9875contigD-mesarthrocarpus_Contig9875:2366..2926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1211035.CD30_03030
PFAMsSigma70_r2,Sigma70_r4_2
Model size561
Max annot lvl91061|Bacilli
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.81e-07
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1V9ZH@1239|Firmicutes,4HM5F@91061|Bacilli,3IW7R@400634|Lysinibacillus
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size561
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.3554065-CDS-D-mesarthrocarpus_Contig9875:2365..29261680791138.3554065-CDS-D-mesarthrocarpus_Contig9875:2365..2926Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9875 2366..2926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9875.1.1prot_D-mesarthrocarpus_Contig9875.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9875 2366..2926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9875.1.1

>prot_D-mesarthrocarpus_Contig9875.1.1 ID=prot_D-mesarthrocarpus_Contig9875.1.1|Name=mRNA_D-mesarthrocarpus_Contig9875.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=187bp
MAKNEKIMSNSTFLPSLRKKRDAFVQEVREAHHEKLLLYALGLSQNMNLK
HLSVDDLMQEMYVSLLMKWPASEKGYRKKGVGYLFKILKFDSYDALRKEK
SAKRQEEVFLIKYSAPVDLKGLGIQGHMEEFYEILRKNFQPDTCTIMQYY
VLGYSYREIATLQAMPINTVGTKIARAKKKLKLVFE*
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mRNA from alignment at D-mesarthrocarpus_Contig9875:2366..2926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9875.1.1 ID=mRNA_D-mesarthrocarpus_Contig9875.1.1|Name=mRNA_D-mesarthrocarpus_Contig9875.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=561bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9875:2366..2926+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCTAAAAATGAAAAGATTATGAGTAATTCTACCTTTCTCCCTTCCTT
AAGGAAAAAGAGAGACGCCTTTGTACAAGAGGTCCGTGAAGCTCATCATG
AAAAGCTCCTCCTGTATGCCCTTGGTTTATCTCAGAACATGAATCTTAAG
CATTTATCAGTAGATGATTTGATGCAAGAAATGTACGTAAGCCTCCTCAT
GAAATGGCCGGCAAGTGAAAAGGGTTACCGTAAAAAAGGAGTCGGATACC
TTTTCAAGATACTGAAGTTCGATTCTTACGATGCGCTCCGGAAAGAAAAG
AGTGCCAAACGTCAAGAGGAAGTATTCCTAATCAAATATTCGGCGCCAGT
AGACCTAAAAGGATTGGGTATACAAGGACATATGGAGGAGTTCTATGAAA
TTCTTCGCAAGAATTTTCAACCAGACACTTGTACAATCATGCAGTATTAT
GTGCTGGGATATTCCTACCGTGAAATAGCAACTTTGCAAGCGATGCCGAT
CAATACGGTAGGAACGAAAATTGCTAGAGCTAAGAAAAAACTCAAGCTGG
TTTTTGAGTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9875:2366..2926+

>mRNA_D-mesarthrocarpus_Contig9875.1.1 ID=mRNA_D-mesarthrocarpus_Contig9875.1.1|Name=mRNA_D-mesarthrocarpus_Contig9875.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=561bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9875:2366..2926+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCTAAAAATGAAAAGATTATGAGTAATTCTACCTTTCTCCCTTCCTT
AAGGAAAAAGAGAGACGCCTTTGTACAAGAGGTCCGTGAAGCTCATCATG
AAAAGCTCCTCCTGTATGCCCTTGGTTTATCTCAGAACATGAATCTTAAG
CATTTATCAGTAGATGATTTGATGCAAGAAATGTACGTAAGCCTCCTCAT
GAAATGGCCGGCAAGTGAAAAGGGTTACCGTAAAAAAGGAGTCGGATACC
TTTTCAAGATACTGAAGTTCGATTCTTACGATGCGCTCCGGAAAGAAAAG
AGTGCCAAACGTCAAGAGGAAGTATTCCTAATCAAATATTCGGCGCCAGT
AGACCTAAAAGGATTGGGTATACAAGGACATATGGAGGAGTTCTATGAAA
TTCTTCGCAAGAATTTTCAACCAGACACTTGTACAATCATGCAGTATTAT
GTGCTGGGATATTCCTACCGTGAAATAGCAACTTTGCAAGCGATGCCGAT
CAATACGGTAGGAACGAAAATTGCTAGAGCTAAGAAAAAACTCAAGCTGG
TTTTTGAGTAA
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