mRNA_D-mesarthrocarpus_Contig9753.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9753.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9753.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A0G4F3L1_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F3L1_VITBC)

HSP 1 Score: 77.4 bits (189), Expect = 1.960e-15
Identity = 34/46 (73.91%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQEV 138
            +P+ IQR+AIPQ+LSGGN+VFAA TGSGKTLAYLLP++QHLK++E+
Sbjct:  867 EPTAIQRLAIPQVLSGGNIVFAAETGSGKTLAYLLPMMQHLKSEEL 912
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A7S2V6I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6I9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.770e-14
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQE 135
            +PS IQ +AIPQ+++GGN+VFAAATGSGKTLAYLLP+IQ L+AQE
Sbjct:  129 RPSKIQAMAIPQVMTGGNMVFAAATGSGKTLAYLLPVIQQLRAQE 173
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.080e-14
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 PSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQE 135
            PS IQR AIPQ+L+GGNVVFAA+TGSGKTLAYL+PLIQ LK +E
Sbjct:  158 PSKIQRKAIPQILNGGNVVFAASTGSGKTLAYLMPLIQQLKVEE 201
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 8.250e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 PSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQE 135
            PS IQR AIPQ+L+GGN+VFAA+TGSGKTLAYL+PLIQ LK +E
Sbjct:   41 PSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEE 84
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.110e-13
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    4 PSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQE 135
            PS IQRIAIPQ+ SGGN+V AAATGSGKTLAYLLP+I  LK+QE
Sbjct:   42 PSSIQRIAIPQITSGGNMVVAAATGSGKTLAYLLPVINALKSQE 85
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A6F9DB93_9ASCI (RNA helicase n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DB93_9ASCI)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQEV 138
            KP+ IQ I+IP  LSG N+V  A TGSGKTL+++LP IQH+KAQ V
Sbjct:  192 KPTPIQSISIPVALSGTNLVGIAQTGSGKTLSFILPAIQHIKAQTV 237
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A5A7P5W8_STRAF (Dead box ATP-dependent RNA helicase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P5W8_STRAF)

HSP 1 Score: 58.5 bits (140), Expect = 8.710e-9
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQ 132
            KP+ IQR+AIP +L G +VV  A TGSGKTLAYLLPL+Q L A+
Sbjct:   69 KPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFAE 112
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A2C9UQT0_MANES (Uncharacterized protein n=7 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UQT0_MANES)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKA 129
            KP+ IQR+AIP +L G +VV  A TGSGKTLAYLLPL+Q L A
Sbjct:   52 KPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLVQKLFA 94
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A433PX60_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PX60_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 PSGIQRIAIPQL--LSGGNVVFAAATGSGKTLAYLLPLIQHLKAQE 135
            P+ IQ +AIP+L  L   +++ AA TGSGKTLAYLLP+IQHLKAQE
Sbjct:  282 PTEIQALAIPELMRLKKPHILCAAETGSGKTLAYLLPIIQHLKAQE 327
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BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Match: A0A6A6L5B9_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L5B9_HEVBR)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKA 129
            KP+ IQR+AIP +L G +VV  A TGSGKTLAYLLPL+Q L A
Sbjct:   55 KPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFA 97
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9753.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4F3L1_VITBC1.960e-1573.91Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]
A0A7S2V6I9_9STRA4.770e-1475.56Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KY63_9PHAE6.080e-1479.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZQ1_ECTSI8.250e-1477.27DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CEI1_9STRA2.110e-1379.55DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6F9DB93_9ASCI3.410e-963.04RNA helicase n=1 Tax=Phallusia mammillata TaxID=59... [more]
A0A5A7P5W8_STRAF8.710e-965.91Dead box ATP-dependent RNA helicase n=1 Tax=Striga... [more]
A0A2C9UQT0_MANES1.190e-867.44Uncharacterized protein n=7 Tax=Crotonoideae TaxID... [more]
A0A433PX60_9FUNG1.190e-865.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6A6L5B9_HEVBR1.630e-867.44Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9753contigD-mesarthrocarpus_Contig9753:807..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZQ1
PFAMsDEAD,Helicase_C
Model size138
Max annot lvl2759|Eukaryota
KEGG koko:K20096
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.35e-14
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size138
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.2746994-CDS-D-mesarthrocarpus_Contig9753:806..9441680791127.2746994-CDS-D-mesarthrocarpus_Contig9753:806..944Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9753 807..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9753.1.1prot_D-mesarthrocarpus_Contig9753.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9753 807..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9753.1.1

>prot_D-mesarthrocarpus_Contig9753.1.1 ID=prot_D-mesarthrocarpus_Contig9753.1.1|Name=mRNA_D-mesarthrocarpus_Contig9753.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=46bp
KPSGIQRIAIPQLLSGGNVVFAAATGSGKTLAYLLPLIQHLKAQEV
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mRNA from alignment at D-mesarthrocarpus_Contig9753:807..944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9753.1.1 ID=mRNA_D-mesarthrocarpus_Contig9753.1.1|Name=mRNA_D-mesarthrocarpus_Contig9753.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=138bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9753:807..944- (Discosporangium mesarthrocarpum MT17_79)
AAACCCAGTGGAATCCAGCGCATAGCGATACCGCAGCTTCTAAGTGGAGG
GAACGTAGTGTTCGCTGCGGCCACTGGATCGGGGAAGACCTTGGCATACC
TTCTCCCTTTGATACAGCACCTTAAGGCCCAGGAGGTA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9753:807..944-

>mRNA_D-mesarthrocarpus_Contig9753.1.1 ID=mRNA_D-mesarthrocarpus_Contig9753.1.1|Name=mRNA_D-mesarthrocarpus_Contig9753.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=138bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9753:807..944- (Discosporangium mesarthrocarpum MT17_79)
AAACCCAGTGGAATCCAGCGCATAGCGATACCGCAGCTTCTAAGTGGAGG
GAACGTAGTGTTCGCTGCGGCCACTGGATCGGGGAAGACCTTGGCATACC
TTCTCCCTTTGATACAGCACCTTAAGGCCCAGGAGGTA
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