Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Match:
D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)
HSP 1 Score: 103 bits (256), Expect = 4.530e-23
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 85 EKFMLPSWHYLLLSGRQFKLDFQWSGLDLLLLQDPRASFNHGGGTNVLALRSSGRLDVSSSGAGENISASLSDACLLPCVYA 330
EKFMLP WHYL LSGR +DF+WS +DL+L+QDP A G NVLALRS+G L VSSSG GE++ L DA LLPC YA
Sbjct: 981 EKFMLPGWHYLALSGRSLSMDFRWSNMDLVLMQDPTARQGRDTGKNVLALRSTGTLTVSSSGVGESVDVQLRDASLLPCFYA 1062
BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Match:
A0A6H5KZA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA2_9PHAE)
HSP 1 Score: 101 bits (251), Expect = 2.120e-22
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 85 EKFMLPSWHYLLLSGRQFKLDFQWSGLDLLLLQDPRASFNHGGGTNVLALRSSGRLDVSSSGAGENISASLSDACLLPCVYA 330
EKFMLP WHYL LSGR +DF+WS +D++L+QDP A G NVLALRS+G L VSSSG GE++ L DA LLPC YA
Sbjct: 998 EKFMLPGWHYLALSGRSLSMDFRWSNMDVVLMQDPTARQGRDTGKNVLALRSTGTLMVSSSGVGESVDVQLRDASLLPCFYA 1079
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.53e-23 / Id = 62.20 Expect = 2.12e-22 / Id = 60.98 Sequence D7G2C6_ECTSI A0A6H5KZA2_9PHAE
Match Name E-value Identity Description
D7G2C6_ECTSI 4.530e-23 62.20 C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more] A0A6H5KZA2_9PHAE 2.120e-22 60.98 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 378 Hectar predicted targeting category other localisation Exons 1 Cds size 375
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789160.5480967-CDS-D-mesarthrocarpus_Contig10170:994..1369 1680789160.5480967-CDS-D-mesarthrocarpus_Contig10170:994..1369 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10170 995..1369 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10170.1.1
>prot_D-mesarthrocarpus_Contig10170.1.1 ID=prot_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=125bp
QDAAGSAGRDRDGGVGGGGGQEDVGGEGEKFMLPSWHYLLLSGRQFKLDF back to top mRNA from alignment at D-mesarthrocarpus_Contig10170:995..1371+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10170.1.1 ID=mRNA_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=377bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10170:995..1371+ (Discosporangium mesarthrocarpum MT17_79)CAAGATGCCGCAGGCAGCGCTGGTCGGGACAGGGATGGGGGTGTGGGTGG
GGGTGGAGGCCAAGAGGACGTTGGTGGCGAAGGGGAGAAGTTCATGCTGC
CCAGCTGGCACTATCTCCTGCTGTCGGGCCGGCAGTTCAAGCTAGACTTC
CAGTGGTCTGGGCTGGACCTCCTGCTACTGCAGGACCCCCGGGCAAGCTT
CAACCATGGAGGGGGAACCAATGTCCTGGCCCTCCGGTCCTCCGGCAGGC
TTGATGTGTCCAGCTCTGGTGCAGGGGAGAACATCAGTGCCAGCCTGTCT
GATGCCTGCCTCCTGCCGTGCGTGTACGCTGGGGCAGGGGCAGGGGCAGG
GGCAGGGGCAGTGGCTTGTGATGGG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10170:995..1371+
>mRNA_D-mesarthrocarpus_Contig10170.1.1 ID=mRNA_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=375bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10170:995..1371+ (Discosporangium mesarthrocarpum MT17_79) back to top