mRNA_D-mesarthrocarpus_Contig10170.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10170.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10170.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.530e-23
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   85 EKFMLPSWHYLLLSGRQFKLDFQWSGLDLLLLQDPRASFNHGGGTNVLALRSSGRLDVSSSGAGENISASLSDACLLPCVYA 330
            EKFMLP WHYL LSGR   +DF+WS +DL+L+QDP A      G NVLALRS+G L VSSSG GE++   L DA LLPC YA
Sbjct:  981 EKFMLPGWHYLALSGRSLSMDFRWSNMDLVLMQDPTARQGRDTGKNVLALRSTGTLTVSSSGVGESVDVQLRDASLLPCFYA 1062
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BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Match: A0A6H5KZA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.120e-22
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   85 EKFMLPSWHYLLLSGRQFKLDFQWSGLDLLLLQDPRASFNHGGGTNVLALRSSGRLDVSSSGAGENISASLSDACLLPCVYA 330
            EKFMLP WHYL LSGR   +DF+WS +D++L+QDP A      G NVLALRS+G L VSSSG GE++   L DA LLPC YA
Sbjct:  998 EKFMLPGWHYLALSGRSLSMDFRWSNMDVVLMQDPTARQGRDTGKNVLALRSTGTLMVSSSGVGESVDVQLRDASLLPCFYA 1079
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C6_ECTSI4.530e-2362.20C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KZA2_9PHAE2.120e-2260.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10170contigD-mesarthrocarpus_Contig10170:995..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.5480967-CDS-D-mesarthrocarpus_Contig10170:994..13691680789160.5480967-CDS-D-mesarthrocarpus_Contig10170:994..1369Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10170 995..1369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10170.1.1prot_D-mesarthrocarpus_Contig10170.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10170 995..1369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10170.1.1

>prot_D-mesarthrocarpus_Contig10170.1.1 ID=prot_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=125bp
QDAAGSAGRDRDGGVGGGGGQEDVGGEGEKFMLPSWHYLLLSGRQFKLDF
QWSGLDLLLLQDPRASFNHGGGTNVLALRSSGRLDVSSSGAGENISASLS
DACLLPCVYAGAGAGAGAGAVACDG
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mRNA from alignment at D-mesarthrocarpus_Contig10170:995..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10170.1.1 ID=mRNA_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=377bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10170:995..1371+ (Discosporangium mesarthrocarpum MT17_79)
CAAGATGCCGCAGGCAGCGCTGGTCGGGACAGGGATGGGGGTGTGGGTGG
GGGTGGAGGCCAAGAGGACGTTGGTGGCGAAGGGGAGAAGTTCATGCTGC
CCAGCTGGCACTATCTCCTGCTGTCGGGCCGGCAGTTCAAGCTAGACTTC
CAGTGGTCTGGGCTGGACCTCCTGCTACTGCAGGACCCCCGGGCAAGCTT
CAACCATGGAGGGGGAACCAATGTCCTGGCCCTCCGGTCCTCCGGCAGGC
TTGATGTGTCCAGCTCTGGTGCAGGGGAGAACATCAGTGCCAGCCTGTCT
GATGCCTGCCTCCTGCCGTGCGTGTACGCTGGGGCAGGGGCAGGGGCAGG
GGCAGGGGCAGTGGCTTGTGATGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10170:995..1371+

>mRNA_D-mesarthrocarpus_Contig10170.1.1 ID=mRNA_D-mesarthrocarpus_Contig10170.1.1|Name=mRNA_D-mesarthrocarpus_Contig10170.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=375bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10170:995..1371+ (Discosporangium mesarthrocarpum MT17_79)
CAAGATGCCGCAGGCAGCGCTGGTCGGGACAGGGATGGGGGTGTGGGTGG
GGGTGGAGGCCAAGAGGACGTTGGTGGCGAAGGGGAGAAGTTCATGCTGC
CCAGCTGGCACTATCTCCTGCTGTCGGGCCGGCAGTTCAAGCTAGACTTC
CAGTGGTCTGGGCTGGACCTCCTGCTACTGCAGGACCCCCGGGCAAGCTT
CAACCATGGAGGGGGAACCAATGTCCTGGCCCTCCGGTCCTCCGGCAGGC
TTGATGTGTCCAGCTCTGGTGCAGGGGAGAACATCAGTGCCAGCCTGTCT
GATGCCTGCCTCCTGCCGTGCGTGTACGCTGGGGCAGGGGCAGGGGCAGG
GGCAGGGGCAGTGGCTTGTGATGGG
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