mRNA_D-mesarthrocarpus_Contig10169.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10169.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10169.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.750e-15
Identity = 49/98 (50.00%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT---------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 177
            DTIFALATGNAGPAGVAVVRISGP S  VLQA+T+                                       P PA RRAV+RRL+DP TGDLLDE
Sbjct:  196 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDE 293
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.470e-15
Identity = 49/99 (49.49%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT----------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 177
            DTIFALATGNAGPAGVAVVRISGP S  VLQA+T+                                        P PA RRAV+RRL+DP TGDLLDE
Sbjct:   32 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDE 130
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05)

HSP 1 Score: 68.9 bits (167), Expect = 7.270e-14
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177
            DTI+A+++G AG AG+AVVR+SGP +G  + A+T  LPA RRAV+R+L DP TGDLLD+
Sbjct:    5 DTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGSLPASRRAVVRKLGDPATGDLLDQ 62
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A7G5IH82_9SPHN (tRNA modification GTPase MnmE n=1 Tax=Sandaracinobacter sp. M6 TaxID=2759707 RepID=A0A7G5IH82_9SPHN)

HSP 1 Score: 67.0 bits (162), Expect = 1.550e-11
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT-PLPAPRRAVLRRLFDPRTGDLLD 174
             TIFAL +G   PAGVA++R+SGP +G  L+A+T  PLPAPR   LRRL DPRTG LLD
Sbjct:    2 STIFALGSGTP-PAGVALIRLSGPAAGPTLKALTNRPLPAPRHTSLRRLHDPRTGTLLD 59
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI000E708D77 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas vastitatis TaxID=2307076 RepID=UPI000E708D77)

HSP 1 Score: 67.0 bits (162), Expect = 1.550e-11
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177
            DTIFALA+G AG A V+++R+SGP SG++L  +   LP PRRA LRRL DPR G+LLDE
Sbjct:    5 DTIFALASG-AGRAAVSLLRLSGPGSGAILARLAAGLPKPRRASLRRLRDPRDGELLDE 62
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTP------LPAPRRAVLRRLFDPRTGDLLDE 177
            DTIFAL++G AG AGVAV+R+SGP +G  L  + T       +P  RRA +RRL+DP  GDLLDE
Sbjct:    4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEARRAAVRRLYDPVKGDLLDE 68
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A1W7M6H9_9SPHN (tRNA modification GTPase MnmE n=5 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A1W7M6H9_9SPHN)

HSP 1 Score: 66.6 bits (161), Expect = 2.120e-11
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 174
            DTIFAL++G   PAG+AVVRISGP +G  L+A+   LPAPRRA L RL DPR G+ LD
Sbjct:    3 DTIFALSSGQP-PAGIAVVRISGPHAGECLRALAGKLPAPRRAALVRLIDPRDGNELD 59
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A437MBJ1_9SPHN (tRNA modification GTPase MnmE n=1 Tax=Sphingomonas crocodyli TaxID=1979270 RepID=A0A437MBJ1_9SPHN)

HSP 1 Score: 65.1 bits (157), Expect = 7.400e-11
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 TIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT-PLPAPRRAVLRRLFDPRTGDLLDE 177
            TIFAL++G   PAG+ VVRISGP +G V+ A+T  PLP PRRA LR L DPR G LLDE
Sbjct:    4 TIFALSSGMP-PAGIGVVRISGPQAGDVIAALTARPLPQPRRATLRPLIDPRDGRLLDE 61
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BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI0018E05130 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas sp. OP-27 TaxID=2748667 RepID=UPI0018E05130)

HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177
            DTIFALA+G AG A VAV+R+SG  SG+++ AM   LP PRRA LRRL DP +G++LDE
Sbjct:    5 DTIFALASG-AGRAAVAVLRVSGAQSGTIVAAMAGGLPHPRRASLRRLRDPASGEVLDE 62
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI001C43B84E (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=2 Tax=Elioraea tepida TaxID=2843330 RepID=UPI001C43B84E)

HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 174
            DTIFALA+G+ G AGVAV+R+SGP     L A+   +P PRRAVLRRL  PRTG++LD
Sbjct:   13 DTIFALASGS-GRAGVAVIRLSGPAVPEALAALVGGVPEPRRAVLRRLRHPRTGEVLD 69
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG51_ECTSI4.750e-1550.00TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A6H5K111_9PHAE6.470e-1549.49TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
UPI00199C6C057.270e-1461.02tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A7G5IH82_9SPHN1.550e-1162.71tRNA modification GTPase MnmE n=1 Tax=Sandaracinob... [more]
UPI000E708D771.550e-1162.71tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A836CK05_9STRA1.570e-1155.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W7M6H9_9SPHN2.120e-1163.79tRNA modification GTPase MnmE n=5 Tax=unclassified... [more]
A0A437MBJ1_9SPHN7.400e-1164.41tRNA modification GTPase MnmE n=1 Tax=Sphingomonas... [more]
UPI0018E051301.020e-1062.71tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
UPI001C43B84E1.020e-1062.07tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10169contigD-mesarthrocarpus_Contig10169:3..233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LG51
Preferred nameGTPBP3
PFAMsMMR_HSR1,MnmE_helical,TrmE_N
Model size177
Max annot lvl2759|Eukaryota
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650,ko:K10769
KEGG ReactionR08701
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000959,GO:0000963,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009790,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0070525,GO:0070899,GO:0070900,GO:0071704,GO:0090304,GO:0090646,GO:0097159,GO:0097367,GO:0140053,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue7.78e-16
EggNOG OGsCOG0486@1|root,KOG1191@2759|Eukaryota
DescriptionGTP binding
Cds size177
COG categoryD
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.1617413-CDS-D-mesarthrocarpus_Contig10169:2..711680789160.1617413-CDS-D-mesarthrocarpus_Contig10169:2..71Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10169 3..71 -
1680789160.1759932-CDS-D-mesarthrocarpus_Contig10169:125..2331680789160.1759932-CDS-D-mesarthrocarpus_Contig10169:125..233Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10169 126..233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10169.1.1prot_D-mesarthrocarpus_Contig10169.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10169 3..233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10169.1.1

>prot_D-mesarthrocarpus_Contig10169.1.1 ID=prot_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=59bp
DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFD
PRTGDLLDE
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mRNA from alignment at D-mesarthrocarpus_Contig10169:3..233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10169.1.1 ID=mRNA_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=231bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10169:3..233- (Discosporangium mesarthrocarpum MT17_79)
GATACGATATTTGCACTGGCGACTGGAAATGCCGGTCCGGCGGGGGTTGC
GGTAGTGCGGATATCAGGACCGTGTTCTGGAAGTGTTCTCCAGGCAATGA
CTACCCCCGTGGCAGTCCCTGCCTCCAAGGCTGAGTTGGGAACCGGGCCA
AAGATTGGAAAGCTACCCGCACCCCGGCGGGCAGTGTTGAGGCGGCTATT
TGACCCCAGGACAGGAGATCTCCTGGACGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10169:3..233-

>mRNA_D-mesarthrocarpus_Contig10169.1.1 ID=mRNA_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=177bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10169:3..233- (Discosporangium mesarthrocarpum MT17_79)
GATACGATATTTGCACTGGCGACTGGAAATGCCGGTCCGGCGGGGGTTGC
GGTAGTGCGGATATCAGGACCGTGTTCTGGAAGTGTTCTCCAGGCAATGA
CTACCCCCCTACCCGCACCCCGGCGGGCAGTGTTGAGGCGGCTATTTGAC
CCCAGGACAGGAGATCTCCTGGACGAG
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