mRNA_D-mesarthrocarpus_Contig10166.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10166.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10166.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: D7G3D1_ECTSI (Rad21_Rec8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3D1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.840e-18
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIWIAAHWDKKLNK QIFQTN+NTSV
Sbjct:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A7R9Y943_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y943_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.480e-15
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKL K QIFQT++++SV
Sbjct:    1 MFYSQLILAKKGPLGKIWLAAHWDKKLTKAQIFQTDISSSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A2P4XFU8_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFU8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  +++TSV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A2P4YM93_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM93_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  +++TSV
Sbjct:  185 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSV 225
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A7S2S5L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5L9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKL K QIFQT++  SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLTKVQIFQTDIERSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A662XSX1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSX1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  ++++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A225X301_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X301_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  ++++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: H3GTZ6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTZ6_PHYRM)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  ++++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A6A3TN23_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TN23_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  ++++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Match: A0A0P1B0L1_PLAHL (Double-strand-break repair protein rad21 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0L1_PLAHL)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV 123
            MFYSQ ILAKKGPLGKIW+AAHWDKKLNK QIF  ++++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10166.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D1_ECTSI7.840e-1892.68Rad21_Rec8_N domain-containing protein n=2 Tax=Ect... [more]
A0A7R9Y943_9STRA7.480e-1580.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P4XFU8_9STRA1.380e-1480.49Double-strand-break repair protein rad21 n=1 Tax=P... [more]
A0A2P4YM93_9STRA1.390e-1480.49Double-strand-break repair protein rad21 n=1 Tax=P... [more]
A0A7S2S5L9_9STRA1.910e-1480.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662XSX1_9STRA4.860e-1478.05Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225X301_9STRA4.860e-1478.05Double-strand-break repair protein rad21 n=1 Tax=P... [more]
H3GTZ6_PHYRM4.860e-1478.05Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3TN23_9STRA4.860e-1478.05Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0P1B0L1_PLAHL4.860e-1478.05Double-strand-break repair protein rad21 n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10166contigD-mesarthrocarpus_Contig10166:3617..3739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3D1
Preferred nameRAD21L1
PFAMsRad21_Rec8,Rad21_Rec8_N
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K06670
KEGG Pathwayko04110,ko04111,map04110,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000981,GO:0001228,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005721,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010972,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030182,GO:0030893,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034991,GO:0035295,GO:0035825,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044821,GO:0044877,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045876,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051984,GO:0051985,GO:0060255,GO:0061458,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070197,GO:0070727,GO:0071168,GO:0071695,GO:0071704,GO:0071840,GO:0072520,GO:0080090,GO:0090068,GO:0090220,GO:0090304,GO:0097159,GO:0097240,GO:0097659,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902680,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905818,GO:1905819,GO:2000112,GO:2000816,GO:2001141,GO:2001251,GO:2001252
Exons1
Evalue1.29e-18
EggNOG OGsKOG1213@1|root,KOG1213@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size123
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.0676196-CDS-D-mesarthrocarpus_Contig10166:3616..37391680789160.0676196-CDS-D-mesarthrocarpus_Contig10166:3616..3739Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10166 3617..3739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10166.1.1prot_D-mesarthrocarpus_Contig10166.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10166 3617..3739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10166.1.1

>prot_D-mesarthrocarpus_Contig10166.1.1 ID=prot_D-mesarthrocarpus_Contig10166.1.1|Name=mRNA_D-mesarthrocarpus_Contig10166.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=41bp
MFYSQTILAKKGPLGKIWIAAHWDKKLNKTQIFQTNVNTSV
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10166:3617..3739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10166.1.1 ID=mRNA_D-mesarthrocarpus_Contig10166.1.1|Name=mRNA_D-mesarthrocarpus_Contig10166.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10166:3617..3739+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTTTATAGCCAGACCATCCTGGCGAAGAAGGGGCCGCTGGGGAAGAT
ATGGATCGCGGCGCACTGGGACAAGAAGCTGAACAAGACACAGATTTTCC
AGACCAATGTCAACACGTCCGTA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10166:3617..3739+

>mRNA_D-mesarthrocarpus_Contig10166.1.1 ID=mRNA_D-mesarthrocarpus_Contig10166.1.1|Name=mRNA_D-mesarthrocarpus_Contig10166.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10166:3617..3739+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTTTATAGCCAGACCATCCTGGCGAAGAAGGGGCCGCTGGGGAAGAT
ATGGATCGCGGCGCACTGGGACAAGAAGCTGAACAAGACACAGATTTTCC
AGACCAATGTCAACACGTCCGTA
back to top