mRNA_D-mesarthrocarpus_Contig10153.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10153.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10153.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10153.2.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.780e-10
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  757 IGTKSSPQGTLLPPPSLPPPASMSSYRAPGKSRGGAGEGGDVVVYQLLMQRWEMRPWVAVPRTLVVTKEQIVLMDEDHGNL 999
            +G   S  GT  P   L P  S S+      S GG  EG  VVV+QLL+QRWE+RPWV VPRTLV TKE++ LMDEDH  +
Sbjct: 1686 VGAPPSLSGTATP--LLSPTVSSSNVVETPPSVGGGHEG-TVVVFQLLVQRWELRPWVVVPRTLVATKEKLALMDEDHSRV 1763
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BLAST of mRNA_D-mesarthrocarpus_Contig10153.2.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.030e-8
Identity = 51/141 (36.17%), Postives = 68/141 (48.23%), Query Frame = 1 
Query:  580 DHHSRGGGSA-SKIFRGLTLKLPGSDMGSAPLEKTGAEAPKAAHSGDLADLHRSPDSGAGIGTKSSPQGTLLPPPS--------LPPPASMSSYRAPGKSRGGAGEGGDVVVYQLLMQRWEMRPWVAVPRTLVVTKEQIVL 975
            D   RGGG A   +  G  +   G+  G    +   +E   A    D A+ H +      +G   S  GT+ P PS        +  P S+          GG G  G VVV+QLL+QRWE+RPWV VPRTLV TKE++V+
Sbjct: 1675 DEDCRGGGVALGSVHGGGAVMDDGNGQGGREGDGDSSEVAGAGEGADAAETHDTASWDL-VGAPPSLSGTVTPLPSPTVRGRNVVETPPSVLVRSGVDVGDGGGGHEGTVVVFQLLVQRWELRPWVVVPRTLVATKEKVVV 1814
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10153.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K372_9PHAE4.780e-1053.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMA8_ECTSI3.030e-836.17Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10153contigD-mesarthrocarpus_Contig10153:1302..3579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMA8
PFAMsLRR_4,LRR_6,LRR_8
Model size1544
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.41e-09
EggNOG OGsKOG1859@1|root,KOG1259@2759|Eukaryota
Descriptionnorepinephrine secretion
Cds size1011
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.1394086-UTR-D-mesarthrocarpus_Contig10153:1301..18321680789159.1394086-UTR-D-mesarthrocarpus_Contig10153:1301..1832Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10153 1302..1832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.1523764-CDS-D-mesarthrocarpus_Contig10153:1832..22671680789159.1523764-CDS-D-mesarthrocarpus_Contig10153:1832..2267Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10153 1833..2267 +
1680789159.1623757-CDS-D-mesarthrocarpus_Contig10153:3003..35791680789159.1623757-CDS-D-mesarthrocarpus_Contig10153:3003..3579Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10153 3004..3579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10153.2.1prot_D-mesarthrocarpus_Contig10153.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10153 1833..3579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10153.2.1

>prot_D-mesarthrocarpus_Contig10153.2.1 ID=prot_D-mesarthrocarpus_Contig10153.2.1|Name=mRNA_D-mesarthrocarpus_Contig10153.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=337bp
MTLPPPPTLGERLVEMDHHSRGGGSASKIFRGLTLKLPGSDMGSAPLEKT
GAEAPKAAHSGDLADLHRSPDSGAGIGTKSSPQGTLLPPPSLPPPASMSS
YRAPGKSRGGAGEGGDVVVYQLLMQRWEMRPWVAVPRTLVVTKEQIVLMD
EDHGNLWRMPGRVSELLRRNTQKKTAKTPEDAPRDPHTIPSVKISTETPS
TSCGSPIPTPTLTPMPALQNPCTSSIPCPPGGSEEGTAGPGIAQPAQSTH
PPLPGSAPASTVGLIRCMPNRGENRSCGSDEGPAPKGKTGTQVLWQQSFP
PSPGDAEGGGGRDSSMSPGENGRVPRLLADVTSQADP
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mRNA from alignment at D-mesarthrocarpus_Contig10153:1302..3579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10153.2.1 ID=mRNA_D-mesarthrocarpus_Contig10153.2.1|Name=mRNA_D-mesarthrocarpus_Contig10153.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10153:1302..3579+ (Discosporangium mesarthrocarpum MT17_79)
CCAGACCAGCTTTCGGGAGCGTGCATGCAGCGAGGGGTGATGGGGAACAT
GGGTCCGCGACAGGTGTGTATTGGTTCCAAATTCATACCAATACTGATAC
CACGTCGTTACCGTGGTGTCATGTTGTATCAGTGCATTATCGTCTCAATA
TGCATCTCTGGTCCACACCTCCAAGAAGTGAGGGGTGGGACTCTCTCAAA
CAGAGGGTGGAGGAGCCGACCACCCCACAACGGAGGAGGAAGAAGTAGCG
TGAGAGTTGGAAGGTCAGGGCCTCAAGCCTCACGGGGTCTAGGTTGGAGT
TGTGGTTTCCTCAACCAGCAGCCTTACTAATCAGGGTGCTCACTCCTTCC
CAAAGACTCGATGCCCTGCGTCTCTTTCCACCTGGTCCTGCAGTCTTTTC
CTTTCAAGAAGATGAAAACAATGCTTGCCCATCCACCCCCCCTGCCCCAT
AGCTGACTCACAGACATCCACCCTTTCCTTTTCTGCCCCTCTCCCCCTGC
ATGTCAGAGCATCACCCAGACTCTACCCCTGATGACCTTGCCCCCGCCGC
CCACACTGGGGGAACGCCTGGTGGAGATGGACCACCATAGCAGGGGTGGT
GGCAGTGCGAGCAAGATTTTCCGGGGCCTTACCCTCAAGCTGCCTGGGTC
GGACATGGGCTCAGCGCCCCTGGAGAAGACAGGGGCAGAAGCGCCCAAGG
CTGCCCACAGCGGAGATCTGGCAGACCTCCACAGGTCCCCTGACTCTGGA
GCAGGCATCGGGACGAAATCTTCGCCCCAGGGCACTCTGCTTCCGCCGCC
ATCACTGCCACCTCCTGCCTCTATGAGCAGCTACAGGGCTCCCGGGAAGA
GCAGGGGGGGAGCAGGGGAAGGGGGTGATGTTGTTGTGTACCAACTCCTG
ATGCAGCGTTGGGAGATGAGGCCATGGGTCGCAGTCCCAAGGACCCTTGT
GGTGACCAAGGAGCAGGTAGGGTATAGGGGGAGGGGGAAGGGGAGGGGGA
AGGGGAGGGTGGAAGGCCAGGCCGTGGGTGGCAGTTCCGCAGACCCTGTT
GTGGAAGGTCTAAGAGCAGATAAAATCCAGACGGCAATATTGGGGTTTCG
CTGTGCGTGTGGGGTTGTAAGTAGGGGTTGGGTTGAGGTTTAGTCAGTGT
TAGAGGAATGAAGGCAGCTGGGCTGGGGCTTGTACAGGTGAGTGGATAGG
GTCAGGGCTACTACTGTGGATGGGCTGACTTGAGGGTCACGGGGGAGAGT
GGCAGGACCTAAGGATGTGGGTGGTGGGTGCTGGCACTGGGAGTTGGGTG
GGTACCGGCACTGGGGGTTCAGTGGGTGCCAGCATTGGGGGCTTGGGTGG
GGGTGCCTTCAACTGCTGTCATTGGAGCTGCACATAGGAAGTTCTTTTTC
CCTCTGATGTGCATGTTCAGACGTATTTCAGAAGAACGTCGGAAGAATTT
CGGAAGTATGCGCATTGTCGATGGCGAAATACTGCATGTGTTAGGCCTAC
CATTCCAGCCCAGCTGACCAACTCAGACGCCTCATTCGCCCTGTCCCTAA
CCCTAACCCCTAACCCTAACCCTAACCCCTAACCCTAACCCCTAATCCCT
AACCCCTAACCCCTAACCCCTGACCCCTGACCCCTGACCCCTGACCCCTG
TAACCCCTGTGTAACCTGGCCGTGCGTCCAATCACTGCGATTGCCATGGC
AGATCGTTCTGATGGATGAGGACCACGGCAACCTGTGGAGGATGCCTGGT
AGGGTCTCGGAGCTCCTCCGGCGAAACACCCAGAAGAAGACGGCAAAGAC
CCCAGAGGATGCCCCCCGGGACCCTCACACAATCCCCTCTGTAAAAATCA
GCACAGAGACCCCAAGCACTTCTTGTGGGTCGCCGATACCGACGCCGACA
CTAACACCAATGCCAGCCCTACAAAACCCCTGCACCAGCAGCATCCCCTG
CCCGCCAGGAGGGTCAGAGGAGGGAACGGCAGGACCTGGCATTGCCCAGC
CTGCCCAATCAACCCACCCACCCCTGCCCGGTTCCGCTCCCGCTTCCACC
GTTGGGCTCATCAGGTGCATGCCCAATAGAGGGGAAAACCGATCCTGCGG
GAGCGATGAAGGACCCGCCCCCAAGGGCAAGACTGGCACACAAGTGTTAT
GGCAACAGTCTTTCCCCCCATCACCTGGTGACGCTGAAGGTGGGGGGGGT
AGGGACAGCAGCATGAGCCCCGGGGAGAACGGCAGGGTGCCAAGACTCTT
GGCAGACGTGACATCACAAGCAGATCCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10153:1302..3579+

>mRNA_D-mesarthrocarpus_Contig10153.2.1 ID=mRNA_D-mesarthrocarpus_Contig10153.2.1|Name=mRNA_D-mesarthrocarpus_Contig10153.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1011bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10153:1302..3579+ (Discosporangium mesarthrocarpum MT17_79)
ATGACCTTGCCCCCGCCGCCCACACTGGGGGAACGCCTGGTGGAGATGGA
CCACCATAGCAGGGGTGGTGGCAGTGCGAGCAAGATTTTCCGGGGCCTTA
CCCTCAAGCTGCCTGGGTCGGACATGGGCTCAGCGCCCCTGGAGAAGACA
GGGGCAGAAGCGCCCAAGGCTGCCCACAGCGGAGATCTGGCAGACCTCCA
CAGGTCCCCTGACTCTGGAGCAGGCATCGGGACGAAATCTTCGCCCCAGG
GCACTCTGCTTCCGCCGCCATCACTGCCACCTCCTGCCTCTATGAGCAGC
TACAGGGCTCCCGGGAAGAGCAGGGGGGGAGCAGGGGAAGGGGGTGATGT
TGTTGTGTACCAACTCCTGATGCAGCGTTGGGAGATGAGGCCATGGGTCG
CAGTCCCAAGGACCCTTGTGGTGACCAAGGAGCAGATCGTTCTGATGGAT
GAGGACCACGGCAACCTGTGGAGGATGCCTGGTAGGGTCTCGGAGCTCCT
CCGGCGAAACACCCAGAAGAAGACGGCAAAGACCCCAGAGGATGCCCCCC
GGGACCCTCACACAATCCCCTCTGTAAAAATCAGCACAGAGACCCCAAGC
ACTTCTTGTGGGTCGCCGATACCGACGCCGACACTAACACCAATGCCAGC
CCTACAAAACCCCTGCACCAGCAGCATCCCCTGCCCGCCAGGAGGGTCAG
AGGAGGGAACGGCAGGACCTGGCATTGCCCAGCCTGCCCAATCAACCCAC
CCACCCCTGCCCGGTTCCGCTCCCGCTTCCACCGTTGGGCTCATCAGGTG
CATGCCCAATAGAGGGGAAAACCGATCCTGCGGGAGCGATGAAGGACCCG
CCCCCAAGGGCAAGACTGGCACACAAGTGTTATGGCAACAGTCTTTCCCC
CCATCACCTGGTGACGCTGAAGGTGGGGGGGGTAGGGACAGCAGCATGAG
CCCCGGGGAGAACGGCAGGGTGCCAAGACTCTTGGCAGACGTGACATCAC
AAGCAGATCCG
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