mRNA_D-mesarthrocarpus_Contig10144.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10144.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10144.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10144.1.1 vs. uniprot
Match: A0A5K3FYK6_MESCO (DNA-directed DNA polymerase n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FYK6_MESCO)

HSP 1 Score: 51.6 bits (122), Expect = 7.030e-5
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   58 PTPSSSGT--YTGATVFEPVTGLFDE-IKAYDFASFYPSIILCANV 186
            PT  S+G   YTGATVFEPV G +DE I   DF+SFYPSII+  N+
Sbjct:  376 PTVKSNGRDEYTGATVFEPVCGFYDEPIITLDFSSFYPSIIIAHNL 421
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BLAST of mRNA_D-mesarthrocarpus_Contig10144.1.1 vs. uniprot
Match: A0A5K3FTS7_MESCO (DNA-directed DNA polymerase n=4 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FTS7_MESCO)

HSP 1 Score: 51.6 bits (122), Expect = 7.260e-5
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   58 PTPSSSGT--YTGATVFEPVTGLFDE-IKAYDFASFYPSIILCANV 186
            PT  S+G   YTGATVFEPV G +DE I   DF+SFYPSII+  N+
Sbjct:  539 PTVKSNGRDEYTGATVFEPVCGFYDEPIITLDFSSFYPSIIIAHNL 584
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BLAST of mRNA_D-mesarthrocarpus_Contig10144.1.1 vs. uniprot
Match: A0A6C0JKJ5_9ZZZZ (DNA-directed DNA polymerase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JKJ5_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 7.430e-5
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   64 PSSSGTYTGATVFEPVTGLFDEIKAYDFASFYPSIILCANV 186
            P     Y GATVFEPV G++D++  +DFAS YPS I+  N+
Sbjct:  485 PKDDDHYVGATVFEPVAGVYDKVLPFDFASLYPSTIIAYNI 525
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BLAST of mRNA_D-mesarthrocarpus_Contig10144.1.1 vs. uniprot
Match: A0A0R3U9G7_MESCO (DNA-directed DNA polymerase n=3 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U9G7_MESCO)

HSP 1 Score: 51.6 bits (122), Expect = 7.440e-5
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   58 PTPSSSGT--YTGATVFEPVTGLFDE-IKAYDFASFYPSIILCANV 186
            PT  S+G   YTGATVFEPV G +DE I   DF+SFYPSII+  N+
Sbjct:  539 PTVKSNGRDEYTGATVFEPVCGFYDEPIITLDFSSFYPSIIIAHNL 584
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5K3FYK6_MESCO7.030e-560.87DNA-directed DNA polymerase n=1 Tax=Mesocestoides ... [more]
A0A5K3FTS7_MESCO7.260e-560.87DNA-directed DNA polymerase n=4 Tax=Mesocestoides ... [more]
A0A6C0JKJ5_9ZZZZ7.430e-551.22DNA-directed DNA polymerase n=1 Tax=viral metageno... [more]
A0A0R3U9G7_MESCO7.440e-560.87DNA-directed DNA polymerase n=3 Tax=Mesocestoides ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10144contigD-mesarthrocarpus_Contig10144:250..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog188763.Q8QS34_9BETA
Model size417
Max annot lvl548681|Herpesvirales
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004527,GO:0004540,GO:0005575,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016032,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0018130,GO:0018995,GO:0019058,GO:0019079,GO:0019438,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0039686,GO:0039693,GO:0042025,GO:0042221,GO:0043170,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0046483,GO:0050896,GO:0051704,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902074
Exons1
Evalue0.000188
EggNOG OGs4QB40@10239|Viruses,4QV3M@35237|dsDNA viruses no RNA stage,4R1DR@548681|Herpesvirales
Description3'-5' exonuclease activity
Cds size411
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.3576434-UTR-D-mesarthrocarpus_Contig10144:249..2551680789158.3576434-UTR-D-mesarthrocarpus_Contig10144:249..255Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10144 250..255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.3721294-CDS-D-mesarthrocarpus_Contig10144:255..6661680789158.3721294-CDS-D-mesarthrocarpus_Contig10144:255..666Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10144 256..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10144.1.1prot_D-mesarthrocarpus_Contig10144.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10144 256..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10144.1.1

>prot_D-mesarthrocarpus_Contig10144.1.1 ID=prot_D-mesarthrocarpus_Contig10144.1.1|Name=mRNA_D-mesarthrocarpus_Contig10144.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
MSLMSFQYSRGKVIDWTPTPSSSGTYTGATVFEPVTGLFDEIKAYDFASF
YPSIILCANVSKEIPISSTSVLSSTRDGIVDWSTNNVSVGIEEHVDVYDL
SVDNVTKNTMQELINIRMKVGKKTPQGWALHSNPSR*
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mRNA from alignment at D-mesarthrocarpus_Contig10144:250..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10144.1.1 ID=mRNA_D-mesarthrocarpus_Contig10144.1.1|Name=mRNA_D-mesarthrocarpus_Contig10144.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=417bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10144:250..666+ (Discosporangium mesarthrocarpum MT17_79)
GTAACTATGTCTCTCATGTCATTCCAGTACTCAAGGGGCAAGGTCATAGA
CTGGACACCTACTCCTTCATCCAGTGGTACCTACACAGGTGCAACGGTGT
TCGAGCCTGTCACGGGCTTGTTTGATGAAATCAAGGCCTATGACTTCGCA
TCCTTTTACCCCTCCATCATACTGTGCGCCAACGTGTCAAAGGAGATACC
AATCTCTAGCACCTCTGTCCTATCATCCACTCGTGATGGAATCGTTGATT
GGTCGACTAACAACGTATCGGTCGGCATCGAAGAACACGTGGACGTCTAC
GATCTATCCGTTGACAATGTAACCAAGAACACGATGCAAGAGCTCATCAA
CATCAGAATGAAGGTGGGCAAGAAGACACCCCAAGGATGGGCACTGCATT
CTAATCCTTCAAGATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10144:250..666+

>mRNA_D-mesarthrocarpus_Contig10144.1.1 ID=mRNA_D-mesarthrocarpus_Contig10144.1.1|Name=mRNA_D-mesarthrocarpus_Contig10144.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10144:250..666+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCTCTCATGTCATTCCAGTACTCAAGGGGCAAGGTCATAGACTGGAC
ACCTACTCCTTCATCCAGTGGTACCTACACAGGTGCAACGGTGTTCGAGC
CTGTCACGGGCTTGTTTGATGAAATCAAGGCCTATGACTTCGCATCCTTT
TACCCCTCCATCATACTGTGCGCCAACGTGTCAAAGGAGATACCAATCTC
TAGCACCTCTGTCCTATCATCCACTCGTGATGGAATCGTTGATTGGTCGA
CTAACAACGTATCGGTCGGCATCGAAGAACACGTGGACGTCTACGATCTA
TCCGTTGACAATGTAACCAAGAACACGATGCAAGAGCTCATCAACATCAG
AATGAAGGTGGGCAAGAAGACACCCCAAGGATGGGCACTGCATTCTAATC
CTTCAAGATAG
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