mRNA_D-mesarthrocarpus_Contig10143.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10143.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig10143.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: D7G5G8_ECTSI (SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVRGLNR+A+AFLVGTKYD+Y S+P EEQRDIDKQA
Sbjct:  112 QVRGLNRSAYAFLVGTKYDLYTSMPAEEQRDIDKQA 147
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A835YI98_9STRA (SPG1, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI98_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVRGLNRNAHAFLVGTKYDI+ +LP EEQ+DIDK A
Sbjct:  112 QVRGLNRNAHAFLVGTKYDIFATLPTEEQQDIDKMA 147
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A7S2UXX0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.420e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVR LNRNAH  LVGTKYDI+ +LP EEQ+DIDKQA
Sbjct:  111 QVRALNRNAHTLLVGTKYDIFTTLPPEEQQDIDKQA 146
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A6V1K250_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K250_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 8.320e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            Q RGLNRNAHAFLVGTKYDI+ +L  EEQ +IDKQA
Sbjct:  110 QARGLNRNAHAFLVGTKYDIFTTLSPEEQAEIDKQA 145
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A6U4CJH1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CJH1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-8
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIY-RSLPEEEQRDIDKQA 108
            QVRGLNR+AHAFLVGTKYD+Y + L E  QRD+DKQA
Sbjct:  123 QVRGLNRSAHAFLVGTKYDLYTQQLDEAAQRDVDKQA 159
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A2R5G3V5_9STRA (Septum-promoting GTP-binding protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3V5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.570e-8
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVRGLN+ A AFL+GTKYD++ +LP EEQ++I KQA
Sbjct:  158 QVRGLNKQAFAFLIGTKYDVFATLPHEEQKEITKQA 193
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A7R9U3U1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3U1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.830e-7
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIY-RSLPEEEQRDIDKQA 108
            QVRGLNR+AHAFLVGTKYD+Y + L E  +R++DKQA
Sbjct:  181 QVRGLNRSAHAFLVGTKYDLYTQQLDEGARREVDKQA 217
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: F0YJU8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJU8_AURAN)

HSP 1 Score: 52.4 bits (124), Expect = 4.650e-7
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVRGLNR+A A LVGTKYD++ +LP EEQ +ID+ A
Sbjct:  108 QVRGLNRSAFALLVGTKYDVFVTLPPEEQAEIDRNA 143
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A7S4EE64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE64_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.370e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            Q RGLNR AHA LVGTKYDI+ +LP EE+  ID+ A
Sbjct:  117 QCRGLNRTAHAILVGTKYDIFITLPPEEREAIDRDA 152
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BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Match: A0A7S2WAQ5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WAQ5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.450e-6
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA 108
            QVRGLN+ A AFL+GTKYDI+ +LP +EQ++I K A
Sbjct:  193 QVRGLNKQAFAFLIGTKYDIFATLPYDEQKEITKTA 228
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10143.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G5G8_ECTSI1.210e-1183.33SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
A0A835YI98_9STRA1.680e-1183.33SPG1, ras superfamily GTPase n=1 Tax=Tribonema min... [more]
A0A7S2UXX0_9STRA4.420e-1077.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1K250_HETAK8.320e-1077.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4CJH1_9STRA1.010e-875.68Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G3V5_9STRA5.570e-866.67Septum-promoting GTP-binding protein 1 n=1 Tax=Hon... [more]
A0A7R9U3U1_9STRA2.830e-770.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YJU8_AURAN4.650e-766.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4EE64_9STRA1.370e-666.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WAQ5_9STRA1.450e-663.89Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10143contigD-mesarthrocarpus_Contig10143:4133..4241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5G8
Preferred namespg1
PFAMsRas
Model size109
Max annot lvl2759|Eukaryota
KEGG koko:K06682,ko:K07976
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000910,GO:0001100,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005816,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010458,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0010973,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0023052,GO:0030071,GO:0031028,GO:0031577,GO:0031578,GO:0031991,GO:0032465,GO:0032467,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0040001,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044732,GO:0044770,GO:0044772,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051293,GO:0051301,GO:0051302,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070727,GO:0071174,GO:0071840,GO:0090068,GO:0097159,GO:0097367,GO:0110020,GO:0140014,GO:1901265,GO:1901363,GO:1901891,GO:1901893,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902412,GO:1902542,GO:1902850,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
Evalue1.99e-12
EggNOG OGsCOG1100@1|root,KOG1673@2759|Eukaryota
Descriptionseptation initiation signaling
Cds size108
COG categoryS
BRITEko00000,ko00001,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.3266475-CDS-D-mesarthrocarpus_Contig10143:4133..42411680789158.3266475-CDS-D-mesarthrocarpus_Contig10143:4133..4241Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10143 4134..4241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10143.5.1prot_D-mesarthrocarpus_Contig10143.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10143 4134..4241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10143.5.1

>prot_D-mesarthrocarpus_Contig10143.5.1 ID=prot_D-mesarthrocarpus_Contig10143.5.1|Name=mRNA_D-mesarthrocarpus_Contig10143.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=36bp
QVRGLNRNAHAFLVGTKYDIYRSLPEEEQRDIDKQA
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mRNA from alignment at D-mesarthrocarpus_Contig10143:4133..4241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10143.5.1 ID=mRNA_D-mesarthrocarpus_Contig10143.5.1|Name=mRNA_D-mesarthrocarpus_Contig10143.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=109bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10143:4133..4241- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGAGGGGTCTCAACCGCAATGCGCACGCCTTCTTGGTGGGGACGAA
GTACGATATCTACAGATCCCTTCCTGAGGAAGAGCAGCGCGACATCGACA
AGCAGGCAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10143:4133..4241-

>mRNA_D-mesarthrocarpus_Contig10143.5.1 ID=mRNA_D-mesarthrocarpus_Contig10143.5.1|Name=mRNA_D-mesarthrocarpus_Contig10143.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10143:4133..4241- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGAGGGGTCTCAACCGCAATGCGCACGCCTTCTTGGTGGGGACGAA
GTACGATATCTACAGATCCCTTCCTGAGGAAGAGCAGCGCGACATCGACA
AGCAGGCA
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