mRNA_D-mesarthrocarpus_Contig10133.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10133.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10133.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10133.2.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    4 KFHEALVLRHLRASSLPMRLWGWEQVQEIIHSSHQDRWQPKAYLVSVRGLQ 156
            +FH  LVLRHLRASSLPMRLWGWEQ +++I+ SH+ RW  KAYLV   G +
Sbjct:  277 RFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLVEGAGTK 327
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BLAST of mRNA_D-mesarthrocarpus_Contig10133.2.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 6.290e-14
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 KFHEALVLRHLRASSLPMRLWGWEQVQEIIHSSHQDRWQPKAYL 135
            +FH  LVLRHLRASSLPMRLWGWEQ +++I+ SH+ RW  K YL
Sbjct:  315 RFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYL 358
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BLAST of mRNA_D-mesarthrocarpus_Contig10133.2.1 vs. uniprot
Match: A0A1Z5K2Z6_FISSO (Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2Z6_FISSO)

HSP 1 Score: 50.4 bits (119), Expect = 9.010e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 FKFHEALVLRHLRASSLPMRLWGWEQVQEIIHSSHQDRWQPKAYLVSVRG 150
            + F   LVLR +R+ SLP++L+GWEQV ++I +    R  P+ YLVS  G
Sbjct:  275 YAFWRDLVLRLIRSQSLPLKLFGWEQVADLIRACESHRPPPREYLVSNAG 324
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10133.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE1.500e-1564.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G2G5_ECTSI6.290e-1468.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5K2Z6_FISSO9.010e-646.00Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10133contigD-mesarthrocarpus_Contig10133:1637..1798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr46079
Model size162
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.26e-05
EggNOG OGs2CYUK@1|root,2S6IK@2759|Eukaryota,2XFZ7@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005890.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.9872932-CDS-D-mesarthrocarpus_Contig10133:1636..17981680789157.9872932-CDS-D-mesarthrocarpus_Contig10133:1636..1798Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10133 1637..1798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10133.2.1prot_D-mesarthrocarpus_Contig10133.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10133 1637..1798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10133.2.1

>prot_D-mesarthrocarpus_Contig10133.2.1 ID=prot_D-mesarthrocarpus_Contig10133.2.1|Name=mRNA_D-mesarthrocarpus_Contig10133.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=54bp
FKFHEALVLRHLRASSLPMRLWGWEQVQEIIHSSHQDRWQPKAYLVSVRG
LQG*
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mRNA from alignment at D-mesarthrocarpus_Contig10133:1637..1798-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10133.2.1 ID=mRNA_D-mesarthrocarpus_Contig10133.2.1|Name=mRNA_D-mesarthrocarpus_Contig10133.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10133:1637..1798- (Discosporangium mesarthrocarpum MT17_79)
TTTAAGTTTCACGAGGCATTGGTTTTGCGCCACCTCCGAGCGTCCTCGCT
GCCGATGCGGCTCTGGGGCTGGGAGCAGGTGCAGGAGATCATCCACAGCA
GTCACCAGGACCGTTGGCAACCCAAGGCGTACCTGGTGAGTGTCAGAGGG
CTGCAGGGTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10133:1637..1798-

>mRNA_D-mesarthrocarpus_Contig10133.2.1 ID=mRNA_D-mesarthrocarpus_Contig10133.2.1|Name=mRNA_D-mesarthrocarpus_Contig10133.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10133:1637..1798- (Discosporangium mesarthrocarpum MT17_79)
TTTAAGTTTCACGAGGCATTGGTTTTGCGCCACCTCCGAGCGTCCTCGCT
GCCGATGCGGCTCTGGGGCTGGGAGCAGGTGCAGGAGATCATCCACAGCA
GTCACCAGGACCGTTGGCAACCCAAGGCGTACCTGGTGAGTGTCAGAGGG
CTGCAGGGTTAG
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