mRNA_D-mesarthrocarpus_Contig1012.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig1012.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig1012.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig1012.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig1012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig1012	contig	D-mesarthrocarpus_Contig1012:95..1154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	607
Hectar predicted targeting category	other localisation
Exons	2
Cds size	606

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789157.0133862-CDS-D-mesarthrocarpus_Contig1012:94..229	1680789157.0133862-CDS-D-mesarthrocarpus_Contig1012:94..229	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1012 95..229 +
1680789157.0290227-CDS-D-mesarthrocarpus_Contig1012:683..1154	1680789157.0290227-CDS-D-mesarthrocarpus_Contig1012:683..1154	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1012 684..1154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig1012.1.1	prot_D-mesarthrocarpus_Contig1012.1.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig1012 95..1154 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig1012:95..1154+
coding sequence from alignment at D-mesarthrocarpus_Contig1012:95..1154+

protein sequence of mRNA_D-mesarthrocarpus_Contig1012.1.1

>prot_D-mesarthrocarpus_Contig1012.1.1 ID=prot_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=202bp
NAIIQQLHRDLVQMLENRAGGIKTAELASTYRQTFSRQMNLHGRKLKELF
ESNSLPGIYIHKTRLDGTFNEIRLEGKTYRSSRVRVHQDPSPTIPSPYPR
PSQASRVVEGGGGPGTTGTCNPYERHTPMSDGGDRGSTSNSMLHPRGDRA
LSAPERPRTPRDRSHPHHQVVTRQGEEAPGHKEAFRSRPVSSSRWPEPAE
RE

mRNA from alignment at D-mesarthrocarpus_Contig1012:95..1154+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig1012.1.1 ID=mRNA_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1060bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:95..1154+ (Discosporangium mesarthrocarpum MT17_79)
AACGCGATCATCCAGCAGCTGCATCGAGACCTTGTTCAGATGCTGGAGAA
CCGGGCGGGCGGCATCAAGACTGCCGAACTCGCCAGCACCTATCGTCAGA
CGTTCAGCCGCCAAATGAATCTTCATGGGAGAAAGGTGGGCTGTTTCAGA
ATGTCATATCGTGGGACAGGGACGGTGCTCCGCTCGCATGGGGGATTTTT
GCGCACGTTTTCCCCGCGGCCACACCATTTGCTTGTAAGGGGTGGGAGAT
CCTGCCTCAGATAGCCTTCTTTCGACTTTCATTTTCCACCAGTCACTGCT
TTCATGGTCTTGGGAAACTACCTAGTACTTTACGCGGAGTACACGCAAAA
GAGTTGACAAAAGAACGTTCCCTGGCGAGGAAATCATGGCCGTTGTTGCC
ATTCTCCTAGCGAGCTGCCATCACAGGAAAGTTCACGACTTTGAAGGAAA
CAGTCTTGCTTTGATGAAAAACTGCCTTGCCAACTGGCGGTCCCACGACC
ATAGCTTCTCCGTCTACATGATACCCCCTATACCCCCCACCCTGATACCC
CATTCCCCCCCCCCCCCCCCTGAACCTTGTCCTGAAAAGCTCAAGGAACT
GTTTGAATCAAACAGCCTCCCTGGGATTTACATACACAAGACCAGGCTGG
ATGGCACCTTCAACGAGATCCGTCTTGAAGGGAAGACCTACCGCTCCAGT
AGGGTGAGGGTACATCAAGACCCCTCCCCCACCATCCCCTCCCCATACCC
CAGACCCAGCCAGGCCAGCAGGGTTGTGGAGGGGGGGGGTGGACCGGGCA
CCACAGGTACGTGCAACCCCTACGAAAGGCACACTCCAATGTCCGATGGT
GGAGACAGAGGCAGCACCAGCAACAGCATGCTGCATCCCAGGGGAGACCG
AGCTCTCAGTGCCCCAGAGCGCCCCAGAACCCCCCGAGATCGTTCCCATC
CACATCACCAGGTGGTCACCAGGCAGGGGGAAGAGGCCCCTGGGCACAAG
GAAGCATTCAGGTCAAGACCTGTGTCTTCTTCTCGCTGGCCTGAGCCCGC
CGAGAGGGAG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1012:95..1154+

>mRNA_D-mesarthrocarpus_Contig1012.1.1 ID=mRNA_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=606bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:95..1154+ (Discosporangium mesarthrocarpum MT17_79)
AACGCGATCATCCAGCAGCTGCATCGAGACCTTGTTCAGATGCTGGAGAA
CCGGGCGGGCGGCATCAAGACTGCCGAACTCGCCAGCACCTATCGTCAGA
CGTTCAGCCGCCAAATGAATCTTCATGGGAGAAAGCTCAAGGAACTGTTT
GAATCAAACAGCCTCCCTGGGATTTACATACACAAGACCAGGCTGGATGG
CACCTTCAACGAGATCCGTCTTGAAGGGAAGACCTACCGCTCCAGTAGGG
TGAGGGTACATCAAGACCCCTCCCCCACCATCCCCTCCCCATACCCCAGA
CCCAGCCAGGCCAGCAGGGTTGTGGAGGGGGGGGGTGGACCGGGCACCAC
AGGTACGTGCAACCCCTACGAAAGGCACACTCCAATGTCCGATGGTGGAG
ACAGAGGCAGCACCAGCAACAGCATGCTGCATCCCAGGGGAGACCGAGCT
CTCAGTGCCCCAGAGCGCCCCAGAACCCCCCGAGATCGTTCCCATCCACA
TCACCAGGTGGTCACCAGGCAGGGGGAAGAGGCCCCTGGGCACAAGGAAG
CATTCAGGTCAAGACCTGTGTCTTCTTCTCGCTGGCCTGAGCCCGCCGAG
AGGGAG