mRNA_D-mesarthrocarpus_Contig1012.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1012.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1012.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1012contigD-mesarthrocarpus_Contig1012:95..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size607
Hectar predicted targeting categoryother localisation
Exons2
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.0133862-CDS-D-mesarthrocarpus_Contig1012:94..2291680789157.0133862-CDS-D-mesarthrocarpus_Contig1012:94..229Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1012 95..229 +
1680789157.0290227-CDS-D-mesarthrocarpus_Contig1012:683..11541680789157.0290227-CDS-D-mesarthrocarpus_Contig1012:683..1154Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1012 684..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1012.1.1prot_D-mesarthrocarpus_Contig1012.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1012 95..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1012.1.1

>prot_D-mesarthrocarpus_Contig1012.1.1 ID=prot_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=202bp
NAIIQQLHRDLVQMLENRAGGIKTAELASTYRQTFSRQMNLHGRKLKELF
ESNSLPGIYIHKTRLDGTFNEIRLEGKTYRSSRVRVHQDPSPTIPSPYPR
PSQASRVVEGGGGPGTTGTCNPYERHTPMSDGGDRGSTSNSMLHPRGDRA
LSAPERPRTPRDRSHPHHQVVTRQGEEAPGHKEAFRSRPVSSSRWPEPAE
RE
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mRNA from alignment at D-mesarthrocarpus_Contig1012:95..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1012.1.1 ID=mRNA_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1060bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:95..1154+ (Discosporangium mesarthrocarpum MT17_79)
AACGCGATCATCCAGCAGCTGCATCGAGACCTTGTTCAGATGCTGGAGAA
CCGGGCGGGCGGCATCAAGACTGCCGAACTCGCCAGCACCTATCGTCAGA
CGTTCAGCCGCCAAATGAATCTTCATGGGAGAAAGGTGGGCTGTTTCAGA
ATGTCATATCGTGGGACAGGGACGGTGCTCCGCTCGCATGGGGGATTTTT
GCGCACGTTTTCCCCGCGGCCACACCATTTGCTTGTAAGGGGTGGGAGAT
CCTGCCTCAGATAGCCTTCTTTCGACTTTCATTTTCCACCAGTCACTGCT
TTCATGGTCTTGGGAAACTACCTAGTACTTTACGCGGAGTACACGCAAAA
GAGTTGACAAAAGAACGTTCCCTGGCGAGGAAATCATGGCCGTTGTTGCC
ATTCTCCTAGCGAGCTGCCATCACAGGAAAGTTCACGACTTTGAAGGAAA
CAGTCTTGCTTTGATGAAAAACTGCCTTGCCAACTGGCGGTCCCACGACC
ATAGCTTCTCCGTCTACATGATACCCCCTATACCCCCCACCCTGATACCC
CATTCCCCCCCCCCCCCCCCTGAACCTTGTCCTGAAAAGCTCAAGGAACT
GTTTGAATCAAACAGCCTCCCTGGGATTTACATACACAAGACCAGGCTGG
ATGGCACCTTCAACGAGATCCGTCTTGAAGGGAAGACCTACCGCTCCAGT
AGGGTGAGGGTACATCAAGACCCCTCCCCCACCATCCCCTCCCCATACCC
CAGACCCAGCCAGGCCAGCAGGGTTGTGGAGGGGGGGGGTGGACCGGGCA
CCACAGGTACGTGCAACCCCTACGAAAGGCACACTCCAATGTCCGATGGT
GGAGACAGAGGCAGCACCAGCAACAGCATGCTGCATCCCAGGGGAGACCG
AGCTCTCAGTGCCCCAGAGCGCCCCAGAACCCCCCGAGATCGTTCCCATC
CACATCACCAGGTGGTCACCAGGCAGGGGGAAGAGGCCCCTGGGCACAAG
GAAGCATTCAGGTCAAGACCTGTGTCTTCTTCTCGCTGGCCTGAGCCCGC
CGAGAGGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1012:95..1154+

>mRNA_D-mesarthrocarpus_Contig1012.1.1 ID=mRNA_D-mesarthrocarpus_Contig1012.1.1|Name=mRNA_D-mesarthrocarpus_Contig1012.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=606bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:95..1154+ (Discosporangium mesarthrocarpum MT17_79)
AACGCGATCATCCAGCAGCTGCATCGAGACCTTGTTCAGATGCTGGAGAA
CCGGGCGGGCGGCATCAAGACTGCCGAACTCGCCAGCACCTATCGTCAGA
CGTTCAGCCGCCAAATGAATCTTCATGGGAGAAAGCTCAAGGAACTGTTT
GAATCAAACAGCCTCCCTGGGATTTACATACACAAGACCAGGCTGGATGG
CACCTTCAACGAGATCCGTCTTGAAGGGAAGACCTACCGCTCCAGTAGGG
TGAGGGTACATCAAGACCCCTCCCCCACCATCCCCTCCCCATACCCCAGA
CCCAGCCAGGCCAGCAGGGTTGTGGAGGGGGGGGGTGGACCGGGCACCAC
AGGTACGTGCAACCCCTACGAAAGGCACACTCCAATGTCCGATGGTGGAG
ACAGAGGCAGCACCAGCAACAGCATGCTGCATCCCAGGGGAGACCGAGCT
CTCAGTGCCCCAGAGCGCCCCAGAACCCCCCGAGATCGTTCCCATCCACA
TCACCAGGTGGTCACCAGGCAGGGGGAAGAGGCCCCTGGGCACAAGGAAG
CATTCAGGTCAAGACCTGTGTCTTCTTCTCGCTGGCCTGAGCCCGCCGAG
AGGGAG
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