mRNA_D-mesarthrocarpus_Contig10111.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10111.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10111.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: UPI001ACCF7DF (Ribosomal RNA large subunit methyltransferase L n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=UPI001ACCF7DF)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            +TP  DPFCGSGT  IEAA+LARGRAPGR+  FA EAW
Sbjct:  202 QTPLVDPFCGSGTLVIEAALLARGRAPGRDRSFAFEAW 239
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A2E3RBZ7_9PLAN (Bifunctional 23S rRNA (Guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (Guanine(2445)-N(2))-methyltransferase RlmL n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3RBZ7_9PLAN)

HSP 1 Score: 58.2 bits (139), Expect = 9.490e-9
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 PFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            PF DPFCGSGT  IEAAM+ R  APGRN +FA E+W
Sbjct:  195 PFVDPFCGSGTIPIEAAMIGRNLAPGRNRKFAAESW 230
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A7Z9LYL7_9PLAN (Bifunctional 23S rRNA (Guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (Guanine(2445)-N(2))-methyltransferase RlmL n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Z9LYL7_9PLAN)

HSP 1 Score: 58.2 bits (139), Expect = 9.500e-9
Identity = 27/38 (71.05%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            K PF DPFCGSGT  IEAAMLAR  APGRN  FA   W
Sbjct:  192 KRPFMDPFCGSGTIPIEAAMLARNMAPGRNREFAASDW 229
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: UPI00195CA242 (class I SAM-dependent RNA methyltransferase n=1 Tax=Oscillibacter sp. CU971 TaxID=2780102 RepID=UPI00195CA242)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            K PF DPFCGSGT  IEAA++AR RAPG + RFA + W
Sbjct:  189 KDPFCDPFCGSGTIPIEAALIARNRAPGLDRRFAAQKW 226
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A3L7PIR2_9BACT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PIR2_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-8
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   10 PFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            PFADPFCGSGT  IEAAM+AR RAPG N  F  E W
Sbjct:  193 PFADPFCGSGTIPIEAAMIARNRAPGANRAFQCEQW 228
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A6I3F2B6_9ACTN (Class I SAM-dependent RNA methyltransferase n=2 Tax=root TaxID=1 RepID=A0A6I3F2B6_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 2.400e-8
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            KTP  DPFCGSGT  IEAA++AR  APGRN  FA + W
Sbjct:  180 KTPLVDPFCGSGTIAIEAALIARRMAPGRNRSFAFQQW 217
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: W0R913_9BACT (RNA methylase n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0R913_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.420e-8
Identity = 27/39 (69.23%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 PKTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            P TP  DP CGSGT  IEAA+LAR  APGR  RFA EAW
Sbjct:  203 PTTPLVDPMCGSGTIPIEAALLARRIAPGRQRRFAFEAW 241
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: UPI001BB47BD3 (class I SAM-dependent RNA methyltransferase n=1 Tax=Dysosmobacter sp. Marseille-Q4140 TaxID=2830675 RepID=UPI001BB47BD3)

HSP 1 Score: 56.2 bits (134), Expect = 4.510e-8
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            K PF DPFCGSGT  IEAA++A+ RAPG + RFA + W
Sbjct:  188 KDPFCDPFCGSGTIPIEAALIAKNRAPGLDRRFAAQKW 225
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A1Q6Q735_9FIRM (RNA methyltransferase n=7 Tax=Firmicutes TaxID=1239 RepID=A0A1Q6Q735_9FIRM)

HSP 1 Score: 56.2 bits (134), Expect = 4.510e-8
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 KTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            + PF DPFCGSGT  IEAA++AR RAPG N  FA + W
Sbjct:  189 RDPFCDPFCGSGTIAIEAALIARNRAPGLNRSFAAQHW 226
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BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Match: A0A0R2CVX6_9LACO (rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Lentilactobacillus senioris DSM 24302 = JCM 17472 TaxID=1423802 RepID=A0A0R2CVX6_9LACO)

HSP 1 Score: 56.2 bits (134), Expect = 4.530e-8
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 PKTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAW 117
            P  PF DPFCGSGT  IEAA++AR  APG N  FA EAW
Sbjct:  189 PDMPFLDPFCGSGTIAIEAALIARNIAPGFNRDFAFEAW 227
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ACCF7DF4.100e-1073.68Ribosomal RNA large subunit methyltransferase L n=... [more]
A0A2E3RBZ7_9PLAN9.490e-969.44Bifunctional 23S rRNA (Guanine(2069)-N(7))-methylt... [more]
A0A7Z9LYL7_9PLAN9.500e-971.05Bifunctional 23S rRNA (Guanine(2069)-N(7))-methylt... [more]
UPI00195CA2421.760e-865.79class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A3L7PIR2_9BACT1.780e-872.22Class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A6I3F2B6_9ACTN2.400e-865.79Class I SAM-dependent RNA methyltransferase n=2 Ta... [more]
W0R913_9BACT2.420e-869.23RNA methylase n=1 Tax=Gemmatirosa kalamazoonesis T... [more]
UPI001BB47BD34.510e-863.16class I SAM-dependent RNA methyltransferase n=1 Ta... [more]
A0A1Q6Q735_9FIRM4.510e-863.16RNA methyltransferase n=7 Tax=Firmicutes TaxID=123... [more]
A0A0R2CVX6_9LACO4.530e-866.67rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Len... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10111contigD-mesarthrocarpus_Contig10111:4376..4498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog861299.J421_0072
PFAMsUPF0020
Model size123
Max annot lvl142182|Gemmatimonadetes
KEGG koko:K07444
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.97e-09
EggNOG OGsCOG0116@1|root,COG0116@2|Bacteria,1ZT80@142182|Gemmatimonadetes
DescriptionPutative RNA methylase family UPF0020
Cds size123
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.7464237-CDS-D-mesarthrocarpus_Contig10111:4375..44981680789156.7464237-CDS-D-mesarthrocarpus_Contig10111:4375..4498Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10111 4376..4498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10111.2.1prot_D-mesarthrocarpus_Contig10111.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10111 4376..4498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10111.2.1

>prot_D-mesarthrocarpus_Contig10111.2.1 ID=prot_D-mesarthrocarpus_Contig10111.2.1|Name=mRNA_D-mesarthrocarpus_Contig10111.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=41bp
PKTPFADPFCGSGTRGIEAAMLARGRAPGRNPRFAVEAWC*
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mRNA from alignment at D-mesarthrocarpus_Contig10111:4376..4498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10111.2.1 ID=mRNA_D-mesarthrocarpus_Contig10111.2.1|Name=mRNA_D-mesarthrocarpus_Contig10111.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10111:4376..4498- (Discosporangium mesarthrocarpum MT17_79)
CCAAAGACCCCGTTCGCGGACCCGTTCTGCGGCTCCGGCACGCGGGGCAT
CGAGGCCGCGATGCTCGCCCGCGGGCGCGCGCCCGGTCGGAACCCCCGCT
TCGCCGTCGAGGCCTGGTGCTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10111:4376..4498-

>mRNA_D-mesarthrocarpus_Contig10111.2.1 ID=mRNA_D-mesarthrocarpus_Contig10111.2.1|Name=mRNA_D-mesarthrocarpus_Contig10111.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10111:4376..4498- (Discosporangium mesarthrocarpum MT17_79)
CCAAAGACCCCGTTCGCGGACCCGTTCTGCGGCTCCGGCACGCGGGGCAT
CGAGGCCGCGATGCTCGCCCGCGGGCGCGCGCCCGGTCGGAACCCCCGCT
TCGCCGTCGAGGCCTGGTGCTGA
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