mRNA_D-mesarthrocarpus_Contig10103.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10103.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10103.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10103.1.1 vs. uniprot
Match: UPI001CA98769 (Hsp70 family protein n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA98769)

HSP 1 Score: 50.1 bits (118), Expect = 8.050e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    4 SPDSRLASSCGDDKTVRLWDVDTQSALHTFFDHDSPV 114
            SPD RL ++ GDD+ VR+WD+D+    HT  DHD PV
Sbjct:  349 SPDGRLVAAGGDDRKVRIWDIDSALVRHTLSDHDGPV 385
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CA987698.050e-554.05Hsp70 family protein n=1 Tax=Dactylosporangium vin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10103contigD-mesarthrocarpus_Contig10103:355..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3983.cassava4.1_000638m
PFAMsWD40
Model size309
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009933,GO:0010014,GO:0010016,GO:0010072,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048367,GO:0048507,GO:0048508,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0090421
Exons2
Evalue8.86e-05
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,37YAD@33090|Viridiplantae,3GNWM@35493|Streptophyta,4JS26@91835|fabids
DescriptionTopless-related protein 1-like
Cds size309
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.8370621-CDS-D-mesarthrocarpus_Contig10103:354..5341680789155.8370621-CDS-D-mesarthrocarpus_Contig10103:354..534Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10103 355..534 +
1680789155.8488839-CDS-D-mesarthrocarpus_Contig10103:1854..19831680789155.8488839-CDS-D-mesarthrocarpus_Contig10103:1854..1983Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10103 1855..1983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10103.1.1prot_D-mesarthrocarpus_Contig10103.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10103 355..1983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10103.1.1

>prot_D-mesarthrocarpus_Contig10103.1.1 ID=prot_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=103bp
YSPDSRLASSCGDDKTVRLWDVDTQSALHTFFDHDSPVGEVRFHPDGTCV
ASCSADKTIKVWDTRSHKLLQHYPAHDGEVTSISFHPSGNFLLSSSADTS
LKV
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mRNA from alignment at D-mesarthrocarpus_Contig10103:355..1983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10103.1.1 ID=mRNA_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1629bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10103:355..1983+ (Discosporangium mesarthrocarpum MT17_79)
TACAGCCCGGACTCGCGGTTGGCATCGTCGTGCGGGGATGACAAGACTGT
TCGGCTGTGGGATGTGGACACCCAGTCTGCTCTGCACACCTTCTTTGACC
ATGATAGTCCAGTCGGGGAGGTCCGGTTCCACCCTGATGGGACTTGTGTC
GCCTCGTGCTCCGCAGACAAGACCATCAAGGTACGCTTCGTCTTCCTTTT
TTTTTTTAATCTGACTATTGCACGGTAGTATGCGGCGGCAATGTAGTCTG
TACGTGGTAATTTTGTTGATGCTGATTTTTTATAACAGGGGTGGTGGTGG
TGGCAAGGGTGGGGGGGGCAAGGGCAGTGGTGGCGGTGGTGGTAGGCTAT
TGGGTGGGAATGGGGGGTTGGGATGGAGGGTTGAGGGTGGGGGAGAGTTG
TGGGTTGGTCACAAACTCTTTTTTGAGTATCCAGCCCCTCATCCTTTGCT
TCATGCCACCCTACCATAGCTGAAAGGTCTGTGGCTGCTGGCTACTGCTG
GTGCCGGCTGAAGGTGACTTCTGACGTTAGTCTTGCAACGCTAGTTAGTC
TTGTAATGCTAGTTAAGCTTTCAATGCTAGTTAAGCTTTCAATGCTATTT
AAACCTTCAACGTTAATTAAACTTGCAATGCTAATTAAGCTTTCAATGCT
AGTTAAGCTTTCAATGCTAGTTAAGCTTTCAATACTAGTTAAATCTTCAA
CATCAATTAAGCTTTCAATGCTAGTTAAACTTTCAATGCTAGTTAAACCT
TCAACGTCAATTAAACTTGCACTGCTAATTAAGCTTTCAATGCTAGTTAA
ACTTTCAATTCTAGTTTAGCTTTCAACTCTGGTTAAGCTTTCAATGCTAA
TTAAACTTTCAATTCTAGTTAAGCTTTCAATGCTAGTTAAGCTTTAAATG
CTAATTAAGCTTTCAATGCAATTTTTGTGCCACCATCTAGTGCAAGGTAG
CAGCAGCAGCGCATTGTCCTACCTGAATGGTTGTCCCTCATCTTGTAGCA
TTTGGTAGCGGCTCTGAGCCCACAACTCTCGGCTCTGGTGACCCAGAGCA
CAAAACAAGGCATGCCCAGGCCCGTGCAGGCGAGTCGCCCCCCCTGGCCC
TCGTAACCCTGTATCGTGCTTGAGCTCTGTGTCTCACACAGCCCTGGTCC
TTGCCGAGGGTCAAAGAAGAACCTCAGGCTCCCTGCAGAGATAGCCAGAC
CTAACCCTGTCCATACCCTTAACCCTAACCTCAGAACAACTAAGGGGCTA
TGAACACCACCCTTGCGACGTGGACCAGGGCTTCTAATATCCTTATCCTT
GGCCCCATGCACATACCCCATGCTGGAAAAAGGGTGCCTGTCCTATGCCT
GATGGGTGGTTACACTTTTTTTTTACCCCTCTGCCTTGACCTTCACGTTT
AGCTCTACTCTGCCCTACTTGGTATGTTTTTTTTTGTTTTCTCCCCCCCT
CTTGCTCCTCGGCTGGAAAAAAAAAATGGAACAAACGGAATGGAACACAG
GTCTGGGACACCCGATCACACAAGCTGCTGCAGCACTACCCAGCCCATGA
TGGGGAGGTGACTTCCATAAGTTTCCATCCCTCAGGAAACTTCCTGCTCT
CCTCTTCTGCGGACACCTCCCTCAAGGTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10103:355..1983+

>mRNA_D-mesarthrocarpus_Contig10103.1.1 ID=mRNA_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=309bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10103:355..1983+ (Discosporangium mesarthrocarpum MT17_79)
TACAGCCCGGACTCGCGGTTGGCATCGTCGTGCGGGGATGACAAGACTGT
TCGGCTGTGGGATGTGGACACCCAGTCTGCTCTGCACACCTTCTTTGACC
ATGATAGTCCAGTCGGGGAGGTCCGGTTCCACCCTGATGGGACTTGTGTC
GCCTCGTGCTCCGCAGACAAGACCATCAAGGTCTGGGACACCCGATCACA
CAAGCTGCTGCAGCACTACCCAGCCCATGATGGGGAGGTGACTTCCATAA
GTTTCCATCCCTCAGGAAACTTCCTGCTCTCCTCTTCTGCGGACACCTCC
CTCAAGGTT
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