mRNA_D-mesarthrocarpus_Contig1010.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1010.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig1010.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.7.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.290e-45
Identity = 120/255 (47.06%), Postives = 157/255 (61.57%), Query Frame = 2 
Query:    8 SISGMQGHLDAHMSASAYSSHADRKAQEEEKEAMRTRHSXXXXXXXXXXXXXMQQLLLEKDGEYHKMAEGFKKQLNDVQLELLNNRQHIINTESQWRKRVEEVETREKVELARMKGKYKDHYGEQLARAKSEAAAANAALEGMSSGLTIAPEGMDRRSSGPSVSPSLQGYNGTRAEGADGMGIGVGEDPKLRSLALMLEESKKESRSLRDRNQELERVVEALRKTIMRQAELSSQRQEHQXXXXQAHRPPHGPRG 772
            S++G++G LDAH++ SA SS ADR   ++E+ A+  +H              +QQ+L+EKD E  K  E FKKQLN+VQLELLNNRQH+INTE+QWRKR+EE E RE  E+ RM+  ++D    +LA  KS+ + A+AA+ G+ S + +A     RR                              D K+RSL+L++EE+KKESR LR+RNQELERVVEALRKTIMRQAELSSQRQ+ Q        P H  RG
Sbjct:  194 SVAGLRGALDAHVAVSAESSAADRHMHQQERAALIDQHEKFVRDLREQHDQTIQQILMEKDVENSKCTESFKKQLNEVQLELLNNRQHMINTEAQWRKRLEEQEQRESGEMMRMREAFQD----ELASVKSDLSTAHAAMGGLGS-MGMAD---GRRGGAXXXXXXXXXXXXXXXXXLXXXXXXXXADHKVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQGTGPGQRPPSHAFRG 440
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.7.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.180e-44
Identity = 117/255 (45.88%), Postives = 153/255 (60.00%), Query Frame = 2 
Query:    8 SISGMQGHLDAHMSASAYSSHADRKAQEEEKEAMRTRHSXXXXXXXXXXXXXMQQLLLEKDGEYHKMAEGFKKQLNDVQLELLNNRQHIINTESQWRKRVEEVETREKVELARMKGKYKDHYGEQLARAKSEAAAANAALEGMSSGLTIAPEGMDRRSSGPSVSPSLQGYNGTRAEGADGMGIGVGEDPKLRSLALMLEESKKESRSLRDRNQELERVVEALRKTIMRQAELSSQRQEHQXXXXQAHRPPHGPRG 772
            S++G++G LDAH++ SA SS ADR   ++E+ A+  +               +QQ+L+EKD E  K  E FKKQLN+VQLELLNNRQH+INTE+QWRKR+EE E RE  E+ RM+  ++D    +LA  KS+ + A+AA+ G+  G     +G                                  D K+RSL+L++EE+KKESR LR+RNQELERVVEALRKTIMRQAELSSQRQ+ Q        P H  RG
Sbjct:  243 SVAGLRGALDAHVAVSAESSAADRHMHQQERAALVDQQEKFVRDLREQHDQTIQQILMEKDVENSKCTESFKKQLNEVQLELLNNRQHMINTEAQWRKRLEEQEQRESGEMMRMREAFQD----ELASVKSDLSTAHAAMGGL--GAXXMADGXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXDHKVRSLSLLVEEAKKESRWLRERNQELERVVEALRKTIMRQAELSSQRQDQQGTGPGQRPPSHAFRG 489
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.7.1 vs. uniprot
Match: A0A835YKF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.640e-42
Identity = 101/184 (54.89%), Postives = 129/184 (70.11%), Query Frame = 2 
Query:  164 MQQLLLEKDGEYHKMAEGFKKQLNDVQLELLNNRQHIINTESQWRKRVEEVETREKVELARMKGKYKDHYGEQLARAKSEAAAANAALEGMSSGLTIAPEGMDRRSSGPSVSPSLQGYNGTRAEGADGMGIGVGEDPKLRSLALMLEESKKESRSLRDRNQELERVVEALRKTIMRQAELSSQR 715
            +QQ++ EKD E+HK AE FKK LND QLELLNNRQH+INTE+QWR+R+EEVE RE+ E+AR+K    DHY   LARAKSE AAA   LEG+ S +              + + +L G +   A G +G  +   +  K+RSLA++LEES+KE++ LRDR  E ER++EALRKTIMRQAELSSQR
Sbjct:  120 LQQVIQEKDAEHHKAAEMFKKSLNDSQLELLNNRQHMINTEAQWRRRLEEVEQRERAEVARIK----DHYEGLLARAKSETAAA---LEGLGSAVAAG-----------AAAGNLDGVHSGGA-GGEGTQVSAADSEKIRSLAVLLEESRKEAKWLRDRTSESERIIEALRKTIMRQAELSSQR 284
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.7.1 vs. uniprot
Match: A0A836CGJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.080e-30
Identity = 111/286 (38.81%), Postives = 136/286 (47.55%), Query Frame = 2 
Query:  164 MQQLLLEKDGEYHKMAEGFKKQLNDVQLELLNNRQHIINTESQWRKRVEEVETREKVELARMKGKYKDHYGEQLARAKSEAAAANAALEGMSSGL----------TIAPEGMDRRSS-----------------------------------------------------------------GPSVSPSLQ------------------GY---NGTRAEGADGMGI------GVGEDPKLRSLALMLEESKKESRSLRDRNQELERVVEALRKTIMRQAELSSQR 715
            +QQ++ EKD EYHK  E  KK LNDVQLELLNNRQH+INTE+QWR+R+E+VE RE+ ELAR K    +H+   LARAK E AAA   LEG+   L            A EG    S+                                                                 GP V+P +                   GY   +G   E  +G G+        G+  KLRSLA++LEES+KE+R LRDRN E ERV+EALRKTIMRQAEL+SQR
Sbjct:   76 LQQVIQEKDAEYHKATENHKKALNDVQLELLNNRQHMINTEAQWRRRLEDVEQRERAELARTK----EHFEALLARAKGETAAA---LEGLGRALWKFGGDGQAIAAAREGQLLYSASWSHVGGAQYEAVTLSKPLPPRMLHLPLGGIASAAGLAASIALARDVPLTARTDAPHPSRACALTGPLVAPPVTLRGGSAVAAGAAAGALDGGYPSGSGLSREAGEGGGLQGGXXXXAGDVDKLRSLAMLLEESRKEARWLRDRNGESERVIEALRKTIMRQAELNSQR 354
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1010.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMF9_9PHAE2.290e-4547.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA0_ECTSI4.180e-4445.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKF1_9STRA2.640e-4254.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGJ9_9STRA5.080e-3038.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1010contigD-mesarthrocarpus_Contig1010:19659..23517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTA0
Model size811
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.88e-43
EggNOG OGs2BZB3@1|root,2SGA8@2759|Eukaryota
Cds size792
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1010.7.1prot_D-mesarthrocarpus_Contig1010.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1010 19659..23498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.6460402-CDS-D-mesarthrocarpus_Contig1010:19658..197261680789155.6460402-CDS-D-mesarthrocarpus_Contig1010:19658..19726Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 19659..19726 -
1680789155.6642609-CDS-D-mesarthrocarpus_Contig1010:20455..205821680789155.6642609-CDS-D-mesarthrocarpus_Contig1010:20455..20582Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 20456..20582 -
1680789155.682073-CDS-D-mesarthrocarpus_Contig1010:20922..211481680789155.682073-CDS-D-mesarthrocarpus_Contig1010:20922..21148Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 20923..21148 -
1680789155.6953118-CDS-D-mesarthrocarpus_Contig1010:21595..217981680789155.6953118-CDS-D-mesarthrocarpus_Contig1010:21595..21798Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 21596..21798 -
1680789155.718724-CDS-D-mesarthrocarpus_Contig1010:22471..225311680789155.718724-CDS-D-mesarthrocarpus_Contig1010:22471..22531Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 22472..22531 -
1680789155.7297492-CDS-D-mesarthrocarpus_Contig1010:23390..234981680789155.7297492-CDS-D-mesarthrocarpus_Contig1010:23390..23498Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 23391..23498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.7430167-UTR-D-mesarthrocarpus_Contig1010:23498..235171680789155.7430167-UTR-D-mesarthrocarpus_Contig1010:23498..23517Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1010 23499..23517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1010.7.1

>prot_D-mesarthrocarpus_Contig1010.7.1 ID=prot_D-mesarthrocarpus_Contig1010.7.1|Name=mRNA_D-mesarthrocarpus_Contig1010.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=264bp
MQGHLDAHMSASAYSSHADRKAQEEEKEAMRTRHSKELETLREQHDQAMQ
QLLLEKDGEYHKMAEGFKKQLNDVQLELLNNRQHIINTESQWRKRVEEVE
TREKVELARMKGKYKDHYGEQLARAKSEAAAANAALEGMSSGLTIAPEGM
DRRSSGPSVSPSLQGYNGTRAEGADGMGIGVGEDPKLRSLALMLEESKKE
SRSLRDRNQELERVVEALRKTIMRQAELSSQRQEHQHQHQQAHRPPHGPR
GRGMHAAHAHHVQL
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mRNA from alignment at D-mesarthrocarpus_Contig1010:19659..23517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1010.7.1 ID=mRNA_D-mesarthrocarpus_Contig1010.7.1|Name=mRNA_D-mesarthrocarpus_Contig1010.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3859bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:19659..23517- (Discosporangium mesarthrocarpum MT17_79)
AGTGAAGTCCATCTCGGGTATGCAGGGGCACTTGGATGCCCACATGAGTG
CCTCGGCATACAGCAGCCATGCTGACCGGAAAGCGCAAGAAGAAGAGAAG
GAGGCCATGAGGACTAGGCACAGCAAGGTGAGGCATAGATATAGCAAGAT
ATCAAGGTGAGGGTCAGGCATAGCAAGGTGAGGAAATGCCATCAGGGCCA
GACATAGTCAAGGTGATTTTACTAAAATTAGAGCCACGGTTGTCTAGGTT
TGGCTCGGTTTTCTCTTGCTTTGGCTTGGTTTGGTTTGGTTTGGTTACAG
GTATGCTAGTGTAAGGACTGCAATCAATGAGATGAAACAAACCAAGGCAC
GGTTAGTATAGTACAGCATTGAACAGCATAGAAGTTCAATCTACCACAAT
AAGACTGCAGTACTCCTGTACTTTTACAGACTGTAGGGTTAGGGTTAGGG
TTGCAACTCCTTCTAAGCACTTCATAGTGCAGTGTACACTGCAGCAGCAG
ATTGATTTGTTAATAGTTTATTTACTTACACCGATTTACTTACACCTGTT
GTGTTCCTTTGAAGTGTTTTTATTGCAGTGGGTCTGGAGCCCAAACTCAA
CTACACGGTTAATTCACCGTCACAGCCTGTACTTCAGTGCGGTTGCCCAC
TGTGCTTCTTTGCTGACCATTTTCGAAGCTCATCTTATCCCCATCCCGAC
CCCCAGCAAAACCCTAACCCTGTCTCCACATTGTCCCACATTCTTAGTTA
GCCCCAACCTTAATGGCACTGTATAACTCTTGTGATTATGACAGTAAGTG
ATCTCTAGCCCTAACCCTAGCCCTAACCCTAGCCCTAACCCTAACCCTAA
CCCTAATGACCCTGACCTTAACCCCAACCCTAACCCTAATGACCCTAACC
CTAATGACCCTGACCTTAACCCCAACCCTAGTCCTAACCCTAACCCTAAC
CCTAACCCTAACCCTAATGACCCTAACCCTATACAGGAGCTGGAGACCCT
TCGTGAGCAGCATGACCAGGCCATGCAGCAGTTGCTTCTGGAGAAGGTGA
GTTTTGGACTGGTGAAGGCAGGCGTGTTCTTCTGGGGGATGGTGGCCAAG
GGGCAATTAGTGTTAGGGCTAGGGTTAGGATCATGCTGTCAGTGTTTTTT
GGGGGGAAATCTTTCATTCACATCGAAGGGCTAGGGTGAGGCTTGGCACC
CTGCGACTTGAGATTTCTAGATCAATCTACAACCTACAAACTATATGCTC
GAGGTCATTTTACAATCCACAATACAGTCTTACAATCTTACATCTGCAAC
CTGCAGTCTTATAATTTACTCAACCTCAGAGACATATCATGCATGACCAC
TACACTTGTGTTGTACGTGATAAAAGTCAGTAGCAATCACTTCTTTTCTA
TCGATACTTTACTGTTACTGTCAGTTAGTTTTGGCAAGAAATAAGCAAGA
ACACTTGACCAAGATTTGCGACAAAGGTGTTTTAAGTTAAACTAATTTGG
TATGACAAGGTTCTTGGCTTGATGAAGAGTGGCAAAGTTTTTTTTTGTTT
TGGCTCGTGCAGCTGGAAGTATCGGGTTGGTAGGGATTCAGTGATAACTT
CAATTTCGGATATTTTTTTGAATGATGCAAAATGATCAAAATTATTGATG
ATACATCTCAAACGAAAAATAATAATAATAATAATAATAATAATGATGAT
GATCATGGCACTACTGAAGGATGGGGAGTACCACAAGATGGCAGAGGGCT
TCAAGAAGCAGCTCAATGACGTACAGCTGGAGCTGCTGAACAACCGGCAG
CATATCATCAACACGGAGTCGCAGTGGCGGAAGAGGGTGGAAGAGGTGGA
GACCAGGGAAAAGGTGGAGCTGGCCCGCATGAAGGGCAAATACAAAGACC
ACTACGGGGAGCAGCTGGCCAGGTGGGTGTGTCATACCCATACTTACACT
TGAATCTTCTACTTGTGGTTTCAATTTTATTTTAGCATTAATGCTTGTAC
TTACACTTACACTCACACTTGCTTGAATTTAGGGTTAAGCGGCTCAATTG
TGACAAGGGTTAAGTGGAAGTTTGCTCTTTGTTCATGTCACATGCCTTTC
TAGTCCTGCTTATACTTTGTACTTTACTGTTTTTGTAGTAATTATATAGT
TACACTTACGATACATACTGTAGTAATATTGTGTGGTATAATACCTAGGG
TTAGGGTCATGGTCTCTATGCTGATTCGATTGGAAGGGACTATTTGTAGT
ACACCAACACATGCACATACAACACATGCACAACAAACCCCGATCCTTAC
CCCTAAATCCAACCCTAACCCCAACCACAATGTTGCCCCCTGTCACACCC
CGCCCTGCCTGTGCCCCAGGGCCAAGAGCGAGGCTGCCGCTGCCAACGCC
GCCCTGGAGGGTATGAGCTCTGGGCTGACCATAGCCCCTGAGGGCATGGA
CCGTCGGTCCAGTGGCCCCAGCGTGTCCCCCAGCCTCCAAGGCTACAATG
GGACAAGGGCAGAGGGGGCAGATGGCATGGGCATAGGCGTGGGGGAAGAC
CCCAAGCTGCGGTCCCTTGCCCTCATGCTGGAGGAGTCGAAAAAGGTGAG
GTCCAGGCTGTTCTGTTGGGGGCCCCAGGCATTGGGATAGGCCCTATGGC
ACCAAGGGAAGGTTGCTTCACGCAGGGTGTCGAGAGAGAGGGGGAGGTGG
CCGTTCCTCCCCCCAATTTTTCATGAAATCAATCTGAAGTAGGGATGAAA
CTGCCGTGACTGTATTTATACTAGATGTAGTATGTATGGTACAGTAGTAT
GTAAATACCTTCAAGGTGTTGGACACTTCAAGAGCAATAGTTCCATTCAT
ATACTGAAGTTAATCACGCTTCCTGACTATGTTTTGTTTTATTGACTGTA
CTGTATGTATTATCCATATGGGTGTGGTCGTGCAGGAGTCCCGCTCACTC
CGTGATCGTAACCAGGAGTTGGAGAGAGTTGTGGAGGCATTGAGGAAGAC
TATCATGAGGCAGGCGGAGCTCTCCAGCCAGCGCCAAGAGCACCAGCACC
AGCACCAGCAAGGTACAAGACGGTTGTGGTTAGGGTTTAGGTTTGGGTAC
TGCACCTTAATTGGAGTACCTTACTAAGTGAAGAACCCTAACCCTAAGGA
TAAAGCTATGCTGCACGTGCTATATACTCCGCTCTTATGTCTGCACTAGT
ATCCGATGTTCACGGAGGTGTCTAGTGTCTGGTGTCTAATGTCTGGTGTT
TTGCTCTAGCCTTACCTAACCTTTCCTTATAATAGGCTTGGGAGTCCTTC
TGATTTATGGTTATGGTTTACCACCCTGGATCTTGAATGTACTAGTCTTG
GGAGTGCTTCTGGATTGTGTAGTAATAACCCTAACCCTAACCCTAACCCC
GAAGTACTGGTTCCTTAAAGTCGTAATCTAGAGGCACCTAAGTACTTCCA
AGTGCTTGTTTCTTCAAGTAAAGATCCTCCAGGGCTACTGAGGTACTTTT
TTTTGTTCCGGTGGAGATATTATATATTGGAGTAGGTCAAGCAATAAGAT
CTAGTACTGCACCCGGTGTACTGCAAGAATATCCTTAACCCTATTCTTTA
CCTTCACAGTGATCTTAACCTGCTCTGTGTGATCCTAATCCCAGCCTGGG
TTAGTATCAATGCAAAGCCCAAGACCTTAACAAAATCCATAACCATAACC
ATAACCCGACCCTGATTCAAGCAGCACCCTGTCCATTGCCCATGTATTAA
TTTGTAAGTGTACTTATCTACCTGCCCCTTGGTGGGATCAGCCCACCGCC
CCCCTCATGGTCCAAGGGGCAGGGGCATGCATGCTGCTCATGCCCATCAT
GTCCAGCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1010:19659..23517-

>mRNA_D-mesarthrocarpus_Contig1010.7.1 ID=mRNA_D-mesarthrocarpus_Contig1010.7.1|Name=mRNA_D-mesarthrocarpus_Contig1010.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=792bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:19659..23517- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGGGCACTTGGATGCCCACATGAGTGCCTCGGCATACAGCAGCCA
TGCTGACCGGAAAGCGCAAGAAGAAGAGAAGGAGGCCATGAGGACTAGGC
ACAGCAAGGAGCTGGAGACCCTTCGTGAGCAGCATGACCAGGCCATGCAG
CAGTTGCTTCTGGAGAAGGATGGGGAGTACCACAAGATGGCAGAGGGCTT
CAAGAAGCAGCTCAATGACGTACAGCTGGAGCTGCTGAACAACCGGCAGC
ATATCATCAACACGGAGTCGCAGTGGCGGAAGAGGGTGGAAGAGGTGGAG
ACCAGGGAAAAGGTGGAGCTGGCCCGCATGAAGGGCAAATACAAAGACCA
CTACGGGGAGCAGCTGGCCAGGGCCAAGAGCGAGGCTGCCGCTGCCAACG
CCGCCCTGGAGGGTATGAGCTCTGGGCTGACCATAGCCCCTGAGGGCATG
GACCGTCGGTCCAGTGGCCCCAGCGTGTCCCCCAGCCTCCAAGGCTACAA
TGGGACAAGGGCAGAGGGGGCAGATGGCATGGGCATAGGCGTGGGGGAAG
ACCCCAAGCTGCGGTCCCTTGCCCTCATGCTGGAGGAGTCGAAAAAGGAG
TCCCGCTCACTCCGTGATCGTAACCAGGAGTTGGAGAGAGTTGTGGAGGC
ATTGAGGAAGACTATCATGAGGCAGGCGGAGCTCTCCAGCCAGCGCCAAG
AGCACCAGCACCAGCACCAGCAAGCCCACCGCCCCCCTCATGGTCCAAGG
GGCAGGGGCATGCATGCTGCTCATGCCCATCATGTCCAGCTC
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