mRNA_D-mesarthrocarpus_Contig1010.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1010.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1010.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: D7G979_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G979_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 PPRDMTAA--QFFAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            P +D T +   FFAPN N RLG+SRDQDGK NVWAVEPKM+VE
Sbjct:   86 PAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVE 128
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A836C6Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Z0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.230e-10
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   28 FFAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            FF PN N R GASRDQDGK NVWA+EPKM+VE
Sbjct:   79 FFQPNANMRYGASRDQDGKSNVWAIEPKMKVE 110
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A835YKW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.380e-9
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   19 AAQFFAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            A+ FF PN N R GASRDQDGK NVWA+EPKM V+
Sbjct:   83 ASGFFQPNANMRYGASRDQDGKSNVWAIEPKMAVD 117
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A7S2W9V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9V8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.300e-6
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   25 QFFAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            +FF+     RLG S DQDGK NVWAVEPKMQVE
Sbjct:   43 KFFSTPPAQRLGTSVDQDGKSNVWAVEPKMQVE 75
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A7S3NDQ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NDQ4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.380e-6
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   31 FAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
             +P  +T+LG+S DQDGK N+WAVEPKMQVE
Sbjct:   53 LSPPKSTKLGSSIDQDGKSNIWAVEPKMQVE 83
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A7S2IT25_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IT25_9EUKA)

HSP 1 Score: 47.0 bits (110), Expect = 2.380e-5
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   22 AQFFAPNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            AQ   P   T+LGA+ DQDGK NVWAVEP M+VE
Sbjct:   51 AQETPPPPPTKLGATVDQDGKSNVWAVEPSMKVE 84
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BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Match: A0A7S2BRW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRW2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.440e-5
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   34 APNTNTRLGASRDQDGKINVWAVEPKMQVE 123
            A  T  RLG+S DQDGK NVWAVEPKM+VE
Sbjct:   77 AAPTGGRLGSSVDQDGKSNVWAVEPKMEVE 106
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G979_ECTSI1.500e-1169.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C6Z0_9STRA6.230e-1078.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKW3_9STRA1.380e-971.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2W9V8_9STRA1.300e-669.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3NDQ4_9STRA1.380e-667.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2IT25_9EUKA2.380e-564.71Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2BRW2_9STRA2.440e-573.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1010contigD-mesarthrocarpus_Contig1010:90..212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G979
Model size123
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.14e-11
EggNOG OGs2E9T4@1|root,2SG3U@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_002930.1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.6004581-CDS-D-mesarthrocarpus_Contig1010:89..2001680789155.6004581-CDS-D-mesarthrocarpus_Contig1010:89..200Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 90..200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.6100953-UTR-D-mesarthrocarpus_Contig1010:200..2121680789155.6100953-UTR-D-mesarthrocarpus_Contig1010:200..212Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1010 201..212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1010.1.1prot_D-mesarthrocarpus_Contig1010.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1010 90..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1010.1.1

>prot_D-mesarthrocarpus_Contig1010.1.1 ID=prot_D-mesarthrocarpus_Contig1010.1.1|Name=mRNA_D-mesarthrocarpus_Contig1010.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=37bp
MTAAQFFAPNTNTRLGASRDQDGKINVWAVEPKMQVE
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mRNA from alignment at D-mesarthrocarpus_Contig1010:90..212-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1010.1.1 ID=mRNA_D-mesarthrocarpus_Contig1010.1.1|Name=mRNA_D-mesarthrocarpus_Contig1010.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:90..212- (Discosporangium mesarthrocarpum MT17_79)
CCCCCCAGGGACATGACGGCTGCCCAATTCTTTGCACCTAACACAAACAC
TCGCCTGGGAGCGTCCCGGGATCAAGATGGCAAGATCAATGTATGGGCGG
TGGAGCCAAAGATGCAGGTTGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1010:90..212-

>mRNA_D-mesarthrocarpus_Contig1010.1.1 ID=mRNA_D-mesarthrocarpus_Contig1010.1.1|Name=mRNA_D-mesarthrocarpus_Contig1010.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=111bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:90..212- (Discosporangium mesarthrocarpum MT17_79)
ATGACGGCTGCCCAATTCTTTGCACCTAACACAAACACTCGCCTGGGAGC
GTCCCGGGATCAAGATGGCAAGATCAATGTATGGGCGGTGGAGCCAAAGA
TGCAGGTTGAG
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