Homology
BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Match:
A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)
HSP 1 Score: 91.3 bits (225), Expect = 6.460e-16
Identity = 102/267 (38.20%), Postives = 129/267 (48.31%), Query Frame = 3
Query: 597 WPESPGEDVPFECASLHETATFPCSIQLVPRAEGASMMYVNGTIASVSRREERRRAEAARITALAACQDLAN-----------------------VSQGKEYGLESRLGEQ-RGEGQRHVQDRRXXXXXXXXXXXXXXXXXXXQVDEAGKPGEG-MNACGSMCIRLVGEMAVPRPAYLQVHQGGVGQGDTLCISQFGLARGGSVACVEL-VPGQTP-----VVATPGGSTRFPW----------RTGKPRLKEVWAGPLLWPNEVNQ 1274
W E PGEDVPFE A LH+ + PC+IQL PR + S+++V+G +E R + TA A + + G+ G+ +R XXXXXXXXXXXXXXXXXXX G ++ IRLVGEM + +PAYLQV +G G+ DTL +SQFG RGG+V+ V+L P Q P + GGS R +PRL WAGPLLWPNEVNQ
Sbjct: 227 WLEDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSIVFVDG--------KESRSYRGKKYTATAGVGRMDDEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDGTGKVERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWVSQRRGDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRMFARLEGAVGGSXXXXXXXXXXXXVLSRRTQPRLTGTWAGPLLWPNEVNQ 485
BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Match:
D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)
HSP 1 Score: 82.0 bits (201), Expect = 5.070e-13
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 3
Query: 1011 IRLVGEMAVPRPAYLQVHQGGVGQGDTLCISQFGLARGGSVACVEL-VPGQTPVVAT--PGGSTRFPW------------RTGKPRLKEVWAGPLLWPNEVNQ 1274
IRLVGEM + +PAYLQV +G G+ DTL +SQFG RGG+V+ V+L P Q P + G +R R +PRL WAGPLLWPNEVNQ
Sbjct: 97 IRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVSRSAAXXXXXXXGGVLSRRMQPRLTGTWAGPLLWPNEVNQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.46e-16 / Id = 38.20 Expect = 5.07e-13 / Id = 48.54 Sequence A0A6H5KJ55_9PHAE D7FTN5_ECTSI
Match Name E-value Identity Description
A0A6H5KJ55_9PHAE 6.460e-16 38.20 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FTN5_ECTSI 5.070e-13 48.54 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 1276 Hectar predicted targeting category signal peptide Exons 3 Cds size 1161
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789154.7792563-CDS-D-mesarthrocarpus_Contig101:323..539 1680789154.7792563-CDS-D-mesarthrocarpus_Contig101:323..539 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig101 324..539 - 1680789154.791038-CDS-D-mesarthrocarpus_Contig101:1525..1933 1680789154.791038-CDS-D-mesarthrocarpus_Contig101:1525..1933 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig101 1526..1933 - 1680789154.7999642-CDS-D-mesarthrocarpus_Contig101:2168..2705 1680789154.7999642-CDS-D-mesarthrocarpus_Contig101:2168..2705 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig101 2169..2705 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789154.8091402-UTR-D-mesarthrocarpus_Contig101:2705..2818 1680789154.8091402-UTR-D-mesarthrocarpus_Contig101:2705..2818 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig101 2706..2818 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig101.1.1
>prot_D-mesarthrocarpus_Contig101.1.1 ID=prot_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=387bp
MPCLRHETRRLIAVVTVFLFLSTRAGYRTGGAEAFFLSSLHPWGSVFPPF back to top mRNA from alignment at D-mesarthrocarpus_Contig101:324..2818-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig101.1.1 ID=mRNA_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2495bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:324..2818- (Discosporangium mesarthrocarpum MT17_79)CAACACGCTGCATGAGTACTCTGAGGCTTTCCACACAAAGACCGCTATCT
CCACCTCGAATCGTGAGGTCCGCCTGGAGTAGCTGGCAGTAGGTTGACTC
AGCCAGCCCACCG ATGCCTTGCCTGCGGCATGAGACACGGAGACTTATCG
CCGTGGTGACAGTCTTCCTGTTCCTGTCGACAAGGGCAGGATACCGTACT
GGAGGAGCTGAGGCCTTTTTTCTCTCAAGTCTGCACCCATGGGGCTCGGT
TTTTCCACCATTCTGTGGCCAGTTCTCGAGGAATGCCAAGCCTGTGTGGG
ATGAGATCTCGAGTCGTCCTTGCCAGTTTTCATGTTGCTACAGACGGCGC
AACTCGTTCGGATTGGCGTGCCAGCGAGGTTACAGGACTGTGACTGGGCC
CGACGGCGAGATGAGGCAGGCTCGGAACCCCATGCGCTCCTCTCTACAGT
CTGAGGCTGACTCACTTTGTGACGTGGACACGTTAGAGAGAGAGCTGGGC
AGATCCCTCTTTCACGATAAGTTCGCAGAGCTTGAAGGAGAGCGGACTGG
TTTTGAGGACATGAAGGACAGGCAGGACTCACCGCGGACTGGGAAGTGGC
CGGAGAGTCCGGGTGAAGATGTGCCATTCGAATGTGCCAGCCTGCACGAG
GTTCGTCATTATAACCACCTGGATGTCCCTCGATTCAACTAATTGCAACA
CAGTTGACATTCACCCCTTGCACATCAAGTCTTCTTATGTTCCTCTCATC
AGCATACTTTCCAACACAAGTTTCCCGTGATCGACCGAACTTTTTTTGTG
CAGACTTGTCCCTTGTCACTCTCTGATGCAACTTTTGGTGATGGAATTCT
TACTCGTGCACATCTTCCTTCTTTCTTGGTGTCAGACGGCCACGTTTCCG
TGTTCGATCCAGCTAGTACCAAGGGCAGAGGGAGCATCCATGATGTATGT
GAACGGAACCATTGCTTCTGTGTCAAGGAGGGAGGAAAGGAGGAGGGCCG
AGGCTGCACGAATCACGGCGCTGGCGGCATGCCAAGATCTTGCCAATGTA
TCCCAGGGCAAAGAATATGGCTTGGAGTCTCGTTTAGGGGAACAGCGTGG
GGAGGGTCAAAGGCATGTGCAGGACCGGAGGAGGGGACAAGGGCAAGTGC
AAGTGCAGGACCTGGGACAGGGACAGGGGCATGGTCAGCAAGTTGATGAG
GCTGGAAAACCCGGGGAGGGCATGAATGCCTGTGGGTCAATGTGCATTCG
ACTCGTGGGCGAGATGGCTGTTCCAAGACCAGCCTACTTGCAG GTGTTGT
GGCATGTATTTCGTGTATATTGGTGTTTGCAAGTTGGAGAGAGTGTGTAA
GTTGGAGGACCTGTTTGTCTATGTCCACACCCTTGATATTGGCGTTTGAA
TAGAAGTCACCTGTACATTATTTTTCAGATGTTATACTGCTCTAGAGCAG
AGCTATGTTTTGCGGACTACTGTACTACTGTGTTTGACTGCTCTAGAGCT
CCAGAGCTTTGATGTGCCTACTGCTGTACTTCTGTGATTGACTGCTCTAG
AGCTCCAGTACTACTGTAATTTTTTCTGTGGTTGTTACTGTAGTGGTGAA
TGTGGTGAACATTGTTTAATTTTGAGTAAGGGCTGGTGAGAGGCTGTGTC
CCCACTCCCATCAAGAATGTTACACCTGCCTGCTGACCAGTTTGGTGCGG
CAGTGCAACATTGTACTAGGTGTTGTGTGGAGTACATGAAAGTGAACTGG
ATGAAGTGGTGGAGGGAGTTGTGAAGATTTAACCCGGTGTACTATGCTGT
TTCCTTAGGGTTATGGGCTTTGCTGGGCATGTATGTATACTCGATTGTGA
TTTTTTGTTCAGGGTACCGCCTTGTTTGCACCAAAAACTCAATGCAGCCA
GCACTCCTGAATGACACAGCAAAATCTTGCGATGAGGCACCTTTGTCTGG
AGCAAGGTACAGCACAGTACCAGGTGCAGCAGAAGTGCAGCAGAGGTGTT
GCATTAAGGGTGGGCGGAACACAGCCATGCTTCTGCTATGCATTTATTTT
CCATGGAGGGCAAAGGCAATAACAAGGCCAGCACAGGAAGTGGTTCCCCT
TCGAAGGCTGGGTCCGTTGGCGGAATCCCCTCAGGGCATGTTATTTTCTC
CCCGCGAAATGTTCCCCTTGTTCCAGTGTTGCTGACCCCGTGCTTGAGCT
ACCCCGCCACCTCAACTCTGACACCAATTCTAACCTTGCTGACACCGTCA
CTGGTCCTAATGCCGGTGTTTACTACCAGGTGCATCAGGGTGGTGTAGGA
CAGGGGGACACTCTGTGTATATCTCAGTTCGGCCTGGCCAGGGGAGGCTC
TGTGGCCTGTGTTGAACTTGTGCCTGGGCAGACCCCTGTTGTTGCCACTC
CTGGTGGTTCTACACGCTTCCCATGGCGGACAGGGAAGCCCAGGCTAAAG
GAAGTGTGGGCGGGGCCCCTCCTGTGGCCCAATGAGGTCAACCAG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig101:324..2818-
>mRNA_D-mesarthrocarpus_Contig101.1.1 ID=mRNA_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1161bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:324..2818- (Discosporangium mesarthrocarpum MT17_79) back to top