mRNA_D-mesarthrocarpus_Contig101.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig101.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig101.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.460e-16
Identity = 102/267 (38.20%), Postives = 129/267 (48.31%), Query Frame = 3 
Query:  597 WPESPGEDVPFECASLHETATFPCSIQLVPRAEGASMMYVNGTIASVSRREERRRAEAARITALAACQDLAN-----------------------VSQGKEYGLESRLGEQ-RGEGQRHVQDRRXXXXXXXXXXXXXXXXXXXQVDEAGKPGEG-MNACGSMCIRLVGEMAVPRPAYLQVHQGGVGQGDTLCISQFGLARGGSVACVEL-VPGQTP-----VVATPGGSTRFPW----------RTGKPRLKEVWAGPLLWPNEVNQ 1274
            W E PGEDVPFE A LH+  + PC+IQL PR +  S+++V+G        +E R     + TA A    + +                                    G+   G+ +R      XXXXXXXXXXXXXXXXXXX          G ++      IRLVGEM + +PAYLQV +G  G+ DTL +SQFG  RGG+V+ V+L  P Q P     +    GGS               R  +PRL   WAGPLLWPNEVNQ
Sbjct:  227 WLEDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSIVFVDG--------KESRSYRGKKYTATAGVGRMDDEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDGTGKVERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWVSQRRGDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRMFARLEGAVGGSXXXXXXXXXXXXVLSRRTQPRLTGTWAGPLLWPNEVNQ 485
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BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.070e-13
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 3 
Query: 1011 IRLVGEMAVPRPAYLQVHQGGVGQGDTLCISQFGLARGGSVACVEL-VPGQTPVVAT--PGGSTRFPW------------RTGKPRLKEVWAGPLLWPNEVNQ 1274
            IRLVGEM + +PAYLQV +G  G+ DTL +SQFG  RGG+V+ V+L  P Q P +     G  +R               R  +PRL   WAGPLLWPNEVNQ
Sbjct:   97 IRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVSRSAAXXXXXXXGGVLSRRMQPRLTGTWAGPLLWPNEVNQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE6.460e-1638.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI5.070e-1348.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig101contigD-mesarthrocarpus_Contig101:324..2818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1276
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1161
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.7792563-CDS-D-mesarthrocarpus_Contig101:323..5391680789154.7792563-CDS-D-mesarthrocarpus_Contig101:323..539Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 324..539 -
1680789154.791038-CDS-D-mesarthrocarpus_Contig101:1525..19331680789154.791038-CDS-D-mesarthrocarpus_Contig101:1525..1933Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 1526..1933 -
1680789154.7999642-CDS-D-mesarthrocarpus_Contig101:2168..27051680789154.7999642-CDS-D-mesarthrocarpus_Contig101:2168..2705Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 2169..2705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.8091402-UTR-D-mesarthrocarpus_Contig101:2705..28181680789154.8091402-UTR-D-mesarthrocarpus_Contig101:2705..2818Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig101 2706..2818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig101.1.1prot_D-mesarthrocarpus_Contig101.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig101 324..2705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig101.1.1

>prot_D-mesarthrocarpus_Contig101.1.1 ID=prot_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=387bp
MPCLRHETRRLIAVVTVFLFLSTRAGYRTGGAEAFFLSSLHPWGSVFPPF
CGQFSRNAKPVWDEISSRPCQFSCCYRRRNSFGLACQRGYRTVTGPDGEM
RQARNPMRSSLQSEADSLCDVDTLERELGRSLFHDKFAELEGERTGFEDM
KDRQDSPRTGKWPESPGEDVPFECASLHETATFPCSIQLVPRAEGASMMY
VNGTIASVSRREERRRAEAARITALAACQDLANVSQGKEYGLESRLGEQR
GEGQRHVQDRRRGQGQVQVQDLGQGQGHGQQVDEAGKPGEGMNACGSMCI
RLVGEMAVPRPAYLQVHQGGVGQGDTLCISQFGLARGGSVACVELVPGQT
PVVATPGGSTRFPWRTGKPRLKEVWAGPLLWPNEVNQ
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mRNA from alignment at D-mesarthrocarpus_Contig101:324..2818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig101.1.1 ID=mRNA_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2495bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:324..2818- (Discosporangium mesarthrocarpum MT17_79)
CAACACGCTGCATGAGTACTCTGAGGCTTTCCACACAAAGACCGCTATCT
CCACCTCGAATCGTGAGGTCCGCCTGGAGTAGCTGGCAGTAGGTTGACTC
AGCCAGCCCACCGATGCCTTGCCTGCGGCATGAGACACGGAGACTTATCG
CCGTGGTGACAGTCTTCCTGTTCCTGTCGACAAGGGCAGGATACCGTACT
GGAGGAGCTGAGGCCTTTTTTCTCTCAAGTCTGCACCCATGGGGCTCGGT
TTTTCCACCATTCTGTGGCCAGTTCTCGAGGAATGCCAAGCCTGTGTGGG
ATGAGATCTCGAGTCGTCCTTGCCAGTTTTCATGTTGCTACAGACGGCGC
AACTCGTTCGGATTGGCGTGCCAGCGAGGTTACAGGACTGTGACTGGGCC
CGACGGCGAGATGAGGCAGGCTCGGAACCCCATGCGCTCCTCTCTACAGT
CTGAGGCTGACTCACTTTGTGACGTGGACACGTTAGAGAGAGAGCTGGGC
AGATCCCTCTTTCACGATAAGTTCGCAGAGCTTGAAGGAGAGCGGACTGG
TTTTGAGGACATGAAGGACAGGCAGGACTCACCGCGGACTGGGAAGTGGC
CGGAGAGTCCGGGTGAAGATGTGCCATTCGAATGTGCCAGCCTGCACGAG
GTTCGTCATTATAACCACCTGGATGTCCCTCGATTCAACTAATTGCAACA
CAGTTGACATTCACCCCTTGCACATCAAGTCTTCTTATGTTCCTCTCATC
AGCATACTTTCCAACACAAGTTTCCCGTGATCGACCGAACTTTTTTTGTG
CAGACTTGTCCCTTGTCACTCTCTGATGCAACTTTTGGTGATGGAATTCT
TACTCGTGCACATCTTCCTTCTTTCTTGGTGTCAGACGGCCACGTTTCCG
TGTTCGATCCAGCTAGTACCAAGGGCAGAGGGAGCATCCATGATGTATGT
GAACGGAACCATTGCTTCTGTGTCAAGGAGGGAGGAAAGGAGGAGGGCCG
AGGCTGCACGAATCACGGCGCTGGCGGCATGCCAAGATCTTGCCAATGTA
TCCCAGGGCAAAGAATATGGCTTGGAGTCTCGTTTAGGGGAACAGCGTGG
GGAGGGTCAAAGGCATGTGCAGGACCGGAGGAGGGGACAAGGGCAAGTGC
AAGTGCAGGACCTGGGACAGGGACAGGGGCATGGTCAGCAAGTTGATGAG
GCTGGAAAACCCGGGGAGGGCATGAATGCCTGTGGGTCAATGTGCATTCG
ACTCGTGGGCGAGATGGCTGTTCCAAGACCAGCCTACTTGCAGGTGTTGT
GGCATGTATTTCGTGTATATTGGTGTTTGCAAGTTGGAGAGAGTGTGTAA
GTTGGAGGACCTGTTTGTCTATGTCCACACCCTTGATATTGGCGTTTGAA
TAGAAGTCACCTGTACATTATTTTTCAGATGTTATACTGCTCTAGAGCAG
AGCTATGTTTTGCGGACTACTGTACTACTGTGTTTGACTGCTCTAGAGCT
CCAGAGCTTTGATGTGCCTACTGCTGTACTTCTGTGATTGACTGCTCTAG
AGCTCCAGTACTACTGTAATTTTTTCTGTGGTTGTTACTGTAGTGGTGAA
TGTGGTGAACATTGTTTAATTTTGAGTAAGGGCTGGTGAGAGGCTGTGTC
CCCACTCCCATCAAGAATGTTACACCTGCCTGCTGACCAGTTTGGTGCGG
CAGTGCAACATTGTACTAGGTGTTGTGTGGAGTACATGAAAGTGAACTGG
ATGAAGTGGTGGAGGGAGTTGTGAAGATTTAACCCGGTGTACTATGCTGT
TTCCTTAGGGTTATGGGCTTTGCTGGGCATGTATGTATACTCGATTGTGA
TTTTTTGTTCAGGGTACCGCCTTGTTTGCACCAAAAACTCAATGCAGCCA
GCACTCCTGAATGACACAGCAAAATCTTGCGATGAGGCACCTTTGTCTGG
AGCAAGGTACAGCACAGTACCAGGTGCAGCAGAAGTGCAGCAGAGGTGTT
GCATTAAGGGTGGGCGGAACACAGCCATGCTTCTGCTATGCATTTATTTT
CCATGGAGGGCAAAGGCAATAACAAGGCCAGCACAGGAAGTGGTTCCCCT
TCGAAGGCTGGGTCCGTTGGCGGAATCCCCTCAGGGCATGTTATTTTCTC
CCCGCGAAATGTTCCCCTTGTTCCAGTGTTGCTGACCCCGTGCTTGAGCT
ACCCCGCCACCTCAACTCTGACACCAATTCTAACCTTGCTGACACCGTCA
CTGGTCCTAATGCCGGTGTTTACTACCAGGTGCATCAGGGTGGTGTAGGA
CAGGGGGACACTCTGTGTATATCTCAGTTCGGCCTGGCCAGGGGAGGCTC
TGTGGCCTGTGTTGAACTTGTGCCTGGGCAGACCCCTGTTGTTGCCACTC
CTGGTGGTTCTACACGCTTCCCATGGCGGACAGGGAAGCCCAGGCTAAAG
GAAGTGTGGGCGGGGCCCCTCCTGTGGCCCAATGAGGTCAACCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig101:324..2818-

>mRNA_D-mesarthrocarpus_Contig101.1.1 ID=mRNA_D-mesarthrocarpus_Contig101.1.1|Name=mRNA_D-mesarthrocarpus_Contig101.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1161bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:324..2818- (Discosporangium mesarthrocarpum MT17_79)
ATGCCTTGCCTGCGGCATGAGACACGGAGACTTATCGCCGTGGTGACAGT
CTTCCTGTTCCTGTCGACAAGGGCAGGATACCGTACTGGAGGAGCTGAGG
CCTTTTTTCTCTCAAGTCTGCACCCATGGGGCTCGGTTTTTCCACCATTC
TGTGGCCAGTTCTCGAGGAATGCCAAGCCTGTGTGGGATGAGATCTCGAG
TCGTCCTTGCCAGTTTTCATGTTGCTACAGACGGCGCAACTCGTTCGGAT
TGGCGTGCCAGCGAGGTTACAGGACTGTGACTGGGCCCGACGGCGAGATG
AGGCAGGCTCGGAACCCCATGCGCTCCTCTCTACAGTCTGAGGCTGACTC
ACTTTGTGACGTGGACACGTTAGAGAGAGAGCTGGGCAGATCCCTCTTTC
ACGATAAGTTCGCAGAGCTTGAAGGAGAGCGGACTGGTTTTGAGGACATG
AAGGACAGGCAGGACTCACCGCGGACTGGGAAGTGGCCGGAGAGTCCGGG
TGAAGATGTGCCATTCGAATGTGCCAGCCTGCACGAGACGGCCACGTTTC
CGTGTTCGATCCAGCTAGTACCAAGGGCAGAGGGAGCATCCATGATGTAT
GTGAACGGAACCATTGCTTCTGTGTCAAGGAGGGAGGAAAGGAGGAGGGC
CGAGGCTGCACGAATCACGGCGCTGGCGGCATGCCAAGATCTTGCCAATG
TATCCCAGGGCAAAGAATATGGCTTGGAGTCTCGTTTAGGGGAACAGCGT
GGGGAGGGTCAAAGGCATGTGCAGGACCGGAGGAGGGGACAAGGGCAAGT
GCAAGTGCAGGACCTGGGACAGGGACAGGGGCATGGTCAGCAAGTTGATG
AGGCTGGAAAACCCGGGGAGGGCATGAATGCCTGTGGGTCAATGTGCATT
CGACTCGTGGGCGAGATGGCTGTTCCAAGACCAGCCTACTTGCAGGTGCA
TCAGGGTGGTGTAGGACAGGGGGACACTCTGTGTATATCTCAGTTCGGCC
TGGCCAGGGGAGGCTCTGTGGCCTGTGTTGAACTTGTGCCTGGGCAGACC
CCTGTTGTTGCCACTCCTGGTGGTTCTACACGCTTCCCATGGCGGACAGG
GAAGCCCAGGCTAAAGGAAGTGTGGGCGGGGCCCCTCCTGTGGCCCAATG
AGGTCAACCAG
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