Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10098.1.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 4.640e-6 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 2 Query: 215 NFFANQSLSVNQRRNPRLNEYFAVIGLGDDLQLVHEPL 328
NF NQSLS+NQRRN RLNEYFAV+GL D L+ +PL
Sbjct: 3 NFVVNQSLSINQRRNARLNEYFAVVGLHDGPLLLSDPL 40
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 415 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 204 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789154.6736906-UTR-D-mesarthrocarpus_Contig10098:1118..1329 | 1680789154.6736906-UTR-D-mesarthrocarpus_Contig10098:1118..1329 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig10098 1119..1329 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789154.6864014-CDS-D-mesarthrocarpus_Contig10098:1329..1373 | 1680789154.6864014-CDS-D-mesarthrocarpus_Contig10098:1329..1373 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig10098 1330..1373 + |
| 1680789154.7026935-CDS-D-mesarthrocarpus_Contig10098:1776..1936 | 1680789154.7026935-CDS-D-mesarthrocarpus_Contig10098:1776..1936 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig10098 1777..1936 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10098.1.1 >prot_D-mesarthrocarpus_Contig10098.1.1 ID=prot_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=68bp
MNFFANQSLSVNQRRNPRLNEYFAVIGLGDDLQLVHEPLTPPLQTVPPPP
PAEPLATPAPSPPPSASP back to topmRNA from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig10098.1.1 ID=mRNA_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=818bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ (Discosporangium mesarthrocarpum MT17_79)
GAAGGAAATCGAGGCTTATGCGAGCCTATGGGAGGGTTGCACCAGACTAT
CGACGCCAATGGCGCCCTTGACGGAGTCTGAATACCTTTCTTCACAAACG
TTGGGCGAGAGAAGGGCCTATTAAGCACTTTGTGTAAGAGAGTTGCAAGA
CAGAACGTTATATAGTAGTCGCCTTGTCTGGCTACAGAAGAGGACCTTGC
ATCCGATTGCGATGAATTTCTTCGCCAATCAGAGTCTTTCGGTGAATCAG
CGAAGGTGTGAGCTCCAAGGCTCTGTTTTCTGGGGGTTCGCCTGAGCATA
CATTCGATTTCCGGGTCGCGATGATGTCACTCGACATCCCCGACATGCGA
CGCATGACAAGTTTATCTCGTGCGCTCTGGGACGCTTTTTCGCCTGCTTC
AACTGGTGTCAGCTCCGTTTGTCGGCCTCGATGAGGAAAAATATAGTTCC
GCACTCGAAATCATCGAGATTCGGCCTCCCCGTTGCCGTCCTCCAAGTCA
CCTCGTCCTCGTTCTATTTAGCATATGGAAGCGGGTGAACCCCAAGGGCT
TGACTGTTCCGGGTTCTCATTTCTTAGTTGTTGCCGACTCGCGCCCGACC
CCTTATCTAACTTGCCACTCCTCGTCCCATTGCACACCAACGCTTTCCCT
CTCTTCAGGAACCCACGATTGAATGAATACTTTGCAGTCATCGGGCTCGG
GGACGACCTCCAGCTTGTTCATGAACCCCTTACTCCCCCTCTGCAGACCG
TTCCACCTCCCCCGCCAGCAGAGCCGTTGGCAACCCCGGCCCCCAGTCCC
CCCCCTTCTGCCTCCCCC back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ >mRNA_D-mesarthrocarpus_Contig10098.1.1 ID=mRNA_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ (Discosporangium mesarthrocarpum MT17_79)
ATGAATTTCTTCGCCAATCAGAGTCTTTCGGTGAATCAGCGAAGGAACCC
ACGATTGAATGAATACTTTGCAGTCATCGGGCTCGGGGACGACCTCCAGC
TTGTTCATGAACCCCTTACTCCCCCTCTGCAGACCGTTCCACCTCCCCCG
CCAGCAGAGCCGTTGGCAACCCCGGCCCCCAGTCCCCCCCCTTCTGCCTC
CCCC back to top
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