mRNA_D-mesarthrocarpus_Contig10098.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10098.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10098.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10098.1.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.640e-6
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  215 NFFANQSLSVNQRRNPRLNEYFAVIGLGDDLQLVHEPL 328
            NF  NQSLS+NQRRN RLNEYFAV+GL D   L+ +PL
Sbjct:    3 NFVVNQSLSINQRRNARLNEYFAVVGLHDGPLLLSDPL 40
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10098.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMA5_9PHAE4.640e-668.42UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10098contigD-mesarthrocarpus_Contig10098:1119..1936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size415
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.6736906-UTR-D-mesarthrocarpus_Contig10098:1118..13291680789154.6736906-UTR-D-mesarthrocarpus_Contig10098:1118..1329Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10098 1119..1329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.6864014-CDS-D-mesarthrocarpus_Contig10098:1329..13731680789154.6864014-CDS-D-mesarthrocarpus_Contig10098:1329..1373Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10098 1330..1373 +
1680789154.7026935-CDS-D-mesarthrocarpus_Contig10098:1776..19361680789154.7026935-CDS-D-mesarthrocarpus_Contig10098:1776..1936Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10098 1777..1936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10098.1.1prot_D-mesarthrocarpus_Contig10098.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10098 1330..1936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10098.1.1

>prot_D-mesarthrocarpus_Contig10098.1.1 ID=prot_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=68bp
MNFFANQSLSVNQRRNPRLNEYFAVIGLGDDLQLVHEPLTPPLQTVPPPP
PAEPLATPAPSPPPSASP
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mRNA from alignment at D-mesarthrocarpus_Contig10098:1119..1936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10098.1.1 ID=mRNA_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=818bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ (Discosporangium mesarthrocarpum MT17_79)
GAAGGAAATCGAGGCTTATGCGAGCCTATGGGAGGGTTGCACCAGACTAT
CGACGCCAATGGCGCCCTTGACGGAGTCTGAATACCTTTCTTCACAAACG
TTGGGCGAGAGAAGGGCCTATTAAGCACTTTGTGTAAGAGAGTTGCAAGA
CAGAACGTTATATAGTAGTCGCCTTGTCTGGCTACAGAAGAGGACCTTGC
ATCCGATTGCGATGAATTTCTTCGCCAATCAGAGTCTTTCGGTGAATCAG
CGAAGGTGTGAGCTCCAAGGCTCTGTTTTCTGGGGGTTCGCCTGAGCATA
CATTCGATTTCCGGGTCGCGATGATGTCACTCGACATCCCCGACATGCGA
CGCATGACAAGTTTATCTCGTGCGCTCTGGGACGCTTTTTCGCCTGCTTC
AACTGGTGTCAGCTCCGTTTGTCGGCCTCGATGAGGAAAAATATAGTTCC
GCACTCGAAATCATCGAGATTCGGCCTCCCCGTTGCCGTCCTCCAAGTCA
CCTCGTCCTCGTTCTATTTAGCATATGGAAGCGGGTGAACCCCAAGGGCT
TGACTGTTCCGGGTTCTCATTTCTTAGTTGTTGCCGACTCGCGCCCGACC
CCTTATCTAACTTGCCACTCCTCGTCCCATTGCACACCAACGCTTTCCCT
CTCTTCAGGAACCCACGATTGAATGAATACTTTGCAGTCATCGGGCTCGG
GGACGACCTCCAGCTTGTTCATGAACCCCTTACTCCCCCTCTGCAGACCG
TTCCACCTCCCCCGCCAGCAGAGCCGTTGGCAACCCCGGCCCCCAGTCCC
CCCCCTTCTGCCTCCCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10098:1119..1936+

>mRNA_D-mesarthrocarpus_Contig10098.1.1 ID=mRNA_D-mesarthrocarpus_Contig10098.1.1|Name=mRNA_D-mesarthrocarpus_Contig10098.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10098:1119..1936+ (Discosporangium mesarthrocarpum MT17_79)
ATGAATTTCTTCGCCAATCAGAGTCTTTCGGTGAATCAGCGAAGGAACCC
ACGATTGAATGAATACTTTGCAGTCATCGGGCTCGGGGACGACCTCCAGC
TTGTTCATGAACCCCTTACTCCCCCTCTGCAGACCGTTCCACCTCCCCCG
CCAGCAGAGCCGTTGGCAACCCCGGCCCCCAGTCCCCCCCCTTCTGCCTC
CCCC
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