mRNA_D-mesarthrocarpus_Contig10086.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10086.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10086.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.220e-27
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQGR 231
            MYNKNGRIGIYT++EREAIIARF+RK+ RRVW+KKIRYNCRKNLADKRLR+KGRFVKMS +Q+AALKLKQ+A++  R
Sbjct:  384 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSAR 460
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.240e-26
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQGRGHVAEVGVLAEALE 273
            MYNKNGRIGIYT++EREAIIARF+RK+ RRVW+KKIRYNCRKNLADKRLR+KGRFVKMS +Q+ ALKLKQ+ ++  R   A  G  +  +E
Sbjct:  514 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGATSMDME 604
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.390e-22
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQG 228
            +YN+NGRIGIYT +EREAIIARF+ K+ RRVWRKKIRYNCRKNLADKRLRIKGRFVKM+  Q+AAL+L QRA   G
Sbjct:  294 VYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQL-QRAAEDG 368
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.370e-21
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKL 204
            +YN++GRIGIYT +EREAIIAR+R K+ RRVWRKKIRYNCRKNLADKRLR+KGRFVKM+  Q+AAL+L
Sbjct:  284 VYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-19
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YNKNGRIGIYT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q A LK
Sbjct:  225 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.540e-19
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQ 225
            +YN+NGRIGIYT  ER AIIARF +K+ RRVW KKIRY CRKNLAD+RLR+KGRFVK S  +  A +L+ R  ++
Sbjct:   49 VYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQARVEKE 123
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-18
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQR 213
            +YNKNGRIG+YT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q AAL  +Q+
Sbjct:  291 IYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.410e-18
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YNKNGRIGIYT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q A LK
Sbjct:  319 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 385
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.330e-18
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YN+NGRIG+YT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q AA+K
Sbjct:  287 IYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVK 353
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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S4AF00_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF00_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVK 171
            +YNKNGRIGIYT  ER AIIARF+ K+ RRVW KKIRYNCRKNLAD+RLR+KGRFVK
Sbjct:  159 VYNKNGRIGIYTPAERAAIIARFQSKRTRRVWNKKIRYNCRKNLADRRLRVKGRFVK 215
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD77_ECTSI4.220e-2780.52CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K330_9PHAE2.240e-2669.23CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZBX8_9STRA5.390e-2277.63CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z588_9STRA5.370e-2177.94CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1Z2T2_TRICV3.910e-1973.13Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2YJJ2_9STRA7.540e-1964.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A6S9FZK2_9STRA1.340e-1869.01Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U6FD34_9STRA3.410e-1873.13Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2MN31_9STRA5.330e-1870.15Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4AF00_9STRA1.700e-1780.70Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10086contigD-mesarthrocarpus_Contig10086:754..3676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD77
PFAMsCCT
Model size1699
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.26e-31
EggNOG OGs2E1UC@1|root,2S94C@2759|Eukaryota
DescriptionCCT motif
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.887508-CDS-D-mesarthrocarpus_Contig10086:753..8631680789153.887508-CDS-D-mesarthrocarpus_Contig10086:753..863Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10086 754..863 +
1680789153.899606-CDS-D-mesarthrocarpus_Contig10086:1912..20381680789153.899606-CDS-D-mesarthrocarpus_Contig10086:1912..2038Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10086 1913..2038 +
1680789153.9139886-CDS-D-mesarthrocarpus_Contig10086:2213..24481680789153.9139886-CDS-D-mesarthrocarpus_Contig10086:2213..2448Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10086 2214..2448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.9327588-UTR-D-mesarthrocarpus_Contig10086:2448..36761680789153.9327588-UTR-D-mesarthrocarpus_Contig10086:2448..3676Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10086 2449..3676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10086.1.1prot_D-mesarthrocarpus_Contig10086.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10086 754..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10086.1.1

>prot_D-mesarthrocarpus_Contig10086.1.1 ID=prot_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=157bp
MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLR
IKGRFVKMSSDQKAALKLKQRAMRQGRGHVAEVGVLAEALETNDFEDAES
DDYSRSSTSVAAAAAEEEEEEEEEEEEEEEEEEEEEEVEAFPEETYKRTR
RHSIAY*
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mRNA from alignment at D-mesarthrocarpus_Contig10086:754..3676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10086.1.1 ID=mRNA_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2923bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10086:754..3676+ (Discosporangium mesarthrocarpum MT17_79)
ATGTACAACAAGAACGGTCGCATTGGCATCTACACAAAGGAAGAGAGGGA
GGCCATAATTGCTCGCTTCCGTCGAAAGAAGTGTCGGAGGGTCTGGAGGA
AGAAAATTAGGTACTTGATGACTGTTGTCTGGAGGAAGAAAATTAGGTAC
TTGATGACTGGTACTTGATGACCGGTACTTGATGACTGTTGTCTGGAGGA
ACAAGATTAGGTACTGTACTGTACGGTACTGTGGGCTAGCTTAATGACTA
TTGTTCCCACAGGACCCATTTTGATATTGCTTTGGTGAATACTTCGCATG
GTGCCCATTGATCATAACATCATTTCCAGAGGCAGGTGCTGTATGGGCTC
GTTAATGGCCACTTGGAGTAGGTTAATCAAGAGGCAGCCATGGATAAGAT
TCTATTCGGGTTCTTAGAATAGGGTTTGAGGAAAAACCACGTGCTGGTGT
TTGCTTCTGTGTTGGATAACATTGTAACTATTGATTAAGGTTGGGGCTAA
GGCTAGAGGTAGGGTTGAGGTTGGGGTTAGATGTACATATGTTGAATATT
GATGTCACGTGAGTAGTCACACCAGCAGGAACACCTGTAACATGAGTGAC
ATATCATGAATCACTTGAGTGGTATTTCTCACATAACTCACTCGCTCATA
TTTCTTGCCTGATTTGTTTGTGCTTAACTTATGTGTACTTGATTTTTGAA
TTTGTCCTAAAGTATTGTATTGTCCTCAAGTAATGCATACAAAGTTTACT
TCTTGATCAACAGTTATGAAATAGTTTATACTTCGTTTTAATATTATTAT
TACTACTAACATTGATTAATGTTTATACTATTATTGCGATTATTTATGGC
TTTTATGTTACAGAGCTAAGTATTATGAAGTGTATTTCTGTGTAATCAAT
CAAGAATTTGATAATTGCTGTATTTGATAATTGAATGTTGATCGATGGGT
ACCAGAATTATGTTATCGATTCAATATTGTGTCTGATATCATTATCATCA
ATTTATACCACTATTATAGTATTGATTGGTTACTGTGTCTGATATCAGTA
GTGGTTATTTATGTCATCATGTTGCACCTCAAGCCATTGGTTATTTTGTT
TATTGATTGACTGATTGTTGGGTGATCAATGTTATTGATTGTTGGGTAAC
CGATACCAGGTACAACTGCCGGAAGAATCTGGCGGACAAGAGGCTGAGGA
TCAAGGGTCGTTTTGTGAAGATGTCCTCAGACCAGAAGGCGGCCCTCAAG
CTCAAGCAGAGAGCCATGAGGCAGGGACGGGGGCAGTCCATCGGAAGGTG
AGGCAATTTTGTCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTT
TCTTTCTGCCCTGCCCTCACCATCACCATCAGCACCGCCAACCTCCTGAT
TCTACCTCAACATGATCATGTTCAACTCCGACCTCATGTGCTTTTTTGTG
TGTGTCCCAGTGTGGCTGAAGTGGGGGTGCTTGCTGAAGCCCTGGAGACA
AACGACTTTGAGGACGCTGAGAGCGATGACTACAGTAGGTCCAGCACCAG
TGTGGCTGCCGCTGCAGCAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGAGGCCTTCCCA
GAGGAGACATACAAGCGGACAAGGAGGCACAGCATCGCATATTAGCCCTA
CCATCTCTCCTGTGGGCAGGGGGACGGGGTGGGAAGAGGGACAGAGAGAG
GGAAAGGGAGTGGAGGTCTGGGGGTGGGGCCTCTTGGGTGGTCTTATTAA
ACAAGTGCTTCCTGTGATTGAGTGGTGAGATGGTAGGGGTGTGAATGGAC
ACAACTGAGCGGCTGTACCTAGGGCTTTCTTCTTGCTGCTTTTGTCCCTG
TACCCCTACTGCTGTCTGCCCTGGTCCCCATTCTCCACTCCCCGTTCACC
CTTTCTATCCCCCCCCCTCGCTTTCGTTTGCAGTATTGTTCCGTGTAATG
AGCCTAGGGACTCTTCTGTGTGAATTTCTGCGGTTGGCATGTGTTTGCCT
TTCCCTCTGGTTCCCACCCCCCTTGAGGGGTTGGTTGCCAGGAAAAGTAC
GTTGGTTTGGTATTGTGTGATGTGGTTTGGGTGAGCCGGCTTGGGTCGGT
GTTGCCCCTTGTAGGATCCTTGGGGATAGGTGGGTGGCAGAAGAGCTATT
TCTGCAGGGGGGCAGAACGGTGTCTGCATGCGAGAATGAATATAAGAAGA
ATATGAATATGGGAAGAATATGAAAATGGAAAAGAAGTAATAATAGGAGG
AGGAGGCGGGAGAGATTCCTGTTTGGGAGCTCTGTGGGTGTTTTGTGCCC
TCCATGGTGTAGATCGTGTGATATTTTTTCTTTTTTCTTTTGGTCTTGGG
ACGGTAGGGTTATGGAGGGCGCTTTTCTCCATCGTCTTTGTAGTCGTTGT
TGGTGGCGTTGTTGATGGTGTTGTGATTGCTCCTTGTGTTGTTTCGAAAG
TTTAGCGCTTGGATTCAACCTCGGGAGTGTGAGGGTTAAGGCATGCAACC
CAGTCCCAAAACCTGCACCAATGGTAGTGCAGACAACAGGATAGGTTTTT
GGGTGGGGGGTCCTGGCCACCCCCCTCCCACAGCACAGGGTAAGGGGGGG
TCGGGTATAACTCTGTCTCTGCCTGCTCCTGCAGGGGTGTTGGTTTTCTT
CTGTTTTGTCGCACACCCCCAAAAACAAAAATGGCCACCAAACTCACTTA
CATCCCCACACAGTGTATGCTCGCTGATGTGGCCTGTATCCAACCCCCTT
GAGGGGCACGGTTGGGCTATGGAGAAATGAGTTTTACAGGGGGCAGGGTG
CGGAGGGAGGTGGCTGGAGTGTAATGGCATGTGACATCAGTTCGATATTT
CAAGTATAACTGATGTCGTTATA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10086:754..3676+

>mRNA_D-mesarthrocarpus_Contig10086.1.1 ID=mRNA_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=471bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10086:754..3676+ (Discosporangium mesarthrocarpum MT17_79)
ATGTACAACAAGAACGGTCGCATTGGCATCTACACAAAGGAAGAGAGGGA
GGCCATAATTGCTCGCTTCCGTCGAAAGAAGTGTCGGAGGGTCTGGAGGA
AGAAAATTAGGTACAACTGCCGGAAGAATCTGGCGGACAAGAGGCTGAGG
ATCAAGGGTCGTTTTGTGAAGATGTCCTCAGACCAGAAGGCGGCCCTCAA
GCTCAAGCAGAGAGCCATGAGGCAGGGACGGGGGCATGTGGCTGAAGTGG
GGGTGCTTGCTGAAGCCCTGGAGACAAACGACTTTGAGGACGCTGAGAGC
GATGACTACAGTAGGTCCAGCACCAGTGTGGCTGCCGCTGCAGCAGAGGA
GGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGTTGAGGCCTTCCCAGAGGAGACATACAAGCGGACAAGG
AGGCACAGCATCGCATATTAG
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