mRNA_D-mesarthrocarpus_Contig1008.7.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.760e-71
Identity = 147/229 (64.19%), Postives = 159/229 (69.43%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQ-------------PMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARKA 880
            S+ SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPF+EK M+IQFAK+ESDV+TKK GTYV R+KRKLP              P P +  P A              XXXXXXXX           P+   P       VPHNILYAT LPP ITQ+ML KLFEQY GF EARMAPGGQAFIEF D MQAG+ALNAL GF L++T  LQL FARKA
Sbjct:   28 SLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGD----VPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 183 bits (465), Expect = 2.480e-50
Identity = 107/217 (49.31%), Postives = 130/217 (59.91%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPF++K M+I FAK +SDV++K +G++VAREKRK   P P               APPAT                   AP+    A       P N+L+A DLP     +ML  LF+QY GFKE RM PG  G AF+EF D  QA +AL  L  F LT T  L L FA++
Sbjct:   27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPK--------------APPATEALE---------------APKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 174 bits (441), Expect = 1.220e-46
Identity = 104/217 (47.93%), Postives = 132/217 (60.83%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ S+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPFYEK M+I FAK +SD + K+ G Y   +KR+  +            + +A +    T          +   +  PV      PA+     VPH IL+A +LP    ++ML  LF+QY+G+KE RM PG  G AFIEF D MQAG AL  L GF LT    LQL +ARK
Sbjct:   29 SLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFTAVQQVEQPV------PAN-----VPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.470e-46
Identity = 103/224 (45.98%), Postives = 132/224 (58.93%), Query Frame = 2

Query:  212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            K +    ++ SVFSQFGKIV+IVACRGLKL+GQAW+ F     AT+A+ +MQGFPFY+K MKI F+KT+SD + K++GT+VAREKRK  +  P +E  P      A      T                    P+ +  AD      P +IL+A +LP     +ML  LF+ Y+GFKE RM PG  G AFIEF D + AG AL  L GF LT TQ L L FA++
Sbjct:   35 KKQPLRKALYSVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASKISTPT--------------------PQILQAADLNAT--PSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAKR 236

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.720e-45
Identity = 97/217 (44.70%), Postives = 127/217 (58.53%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ S+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPFYEK M+I F+KT+SDV+ K++GTY  R+++  P P P +   P+        A                       A +  P         P+ IL+A  LP    +++L  LF+QY GF E RM PG  G AF+EF+D MQAG A+  L GF LT    L L +A +
Sbjct:   22 SLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKRKAPPAPAPDAPAQPSAPFAQTTAA-----------------------AGKNNP---------PNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.410e-45
Identity = 98/214 (45.79%), Postives = 131/214 (61.21%), Query Frame = 2

Query:  242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+FSQFGKI+D+V CRG++L+GQAW+ FA+   AT+A+++MQGFPFY+K M+I FAK++SD+I K +GT+V+REKRK        E PPA     A  AP                    P  P  + P        P N+L+A +LP    Q ML  LF+QY+G+KE RM PG  G AFIEF D +QA +AL  L GF+L+ T  L L FA++
Sbjct:   35 SLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKR-------ESPPAANTDAAHQAPQKKQL---------------PTPPTNLTP--------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 167 bits (422), Expect = 3.910e-44
Identity = 93/214 (43.46%), Postives = 133/214 (62.15%), Query Frame = 2

Query:  242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            ++FSQ+GK+++IVAC+G++L+GQAW+V+ + S ATNA+R++QGF FY+K ++I FAKT+SD++ KK+GT+  R+KR   +         +  +  A  APP                  PPVA    P  +     VPH IL+A +LP      ML  LF+QY GF+E RMAPG  G AFIEFQD +QAG+AL  L GF L++   LQL + ++
Sbjct:   29 ALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQS-------SAMEDGARAAPPPAQYKE------------PPVAKTPKPIVNN----VPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.860e-44
Identity = 100/217 (46.08%), Postives = 127/217 (58.53%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPFY+K M+I FAK++SD+I K++GT+  REKRK   P P +   PA  + +                  +PG   PP                       ++LP   + +ML  LF+QY+GFKE RM PG  G AF+EF D  QA +A   L GF LT T  L L FA++
Sbjct:   27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAA---PAAAKALP-----------------APGDAPPPKVXXXX-------XXXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A0S3S4Y7_PHAAN (Uncharacterized protein n=2 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3S4Y7_PHAAN)

HSP 1 Score: 167 bits (422), Expect = 1.400e-43
Identity = 111/245 (45.31%), Postives = 146/245 (59.59%), Query Frame = 2

Query:  149 PSLRYYWRIPSLAASMLVPRRKTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            P LR+ W I SL   ML    K      S+ +VF+QFGKI++++A + LK KGQAWVVF E S A+NALRQMQGFPFY+K M+IQ+AKT+SDVI K +GT+V REKRK      G +      Q  A +A    +         +P    P  A   VP A  P    P+NIL+  +LP   T +MLQ LF QY GFKE RM  A  G AF+E+ D MQ+ VA+ +L+GF +T    + + +A+K
Sbjct:   32 PQLRFRWIIRSLNCRMLDVELKK-----SLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDK-GKK---RKDQHDANLAGMGLNPAYSGAYGATPTIPYPGGAKSMVPEAPAP----PNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 263

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 165 bits (417), Expect = 3.580e-43
Identity = 110/230 (47.83%), Postives = 143/230 (62.17%), Query Frame = 2

Query:  212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVA------PPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            K      S+ +VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPFY+K M+IQ+AK++SD ++K +GT+V+REKRK            A R+R    A      PPA++ XXXXXXX                    P    P+NIL+A +LP     +M++ LF+Q+ GFKE RM  A  G AFIEF D MQA VAL AL  F +T T  +Q+ +A+K
Sbjct:   21 KKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEK-------AERKRREHQAEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXP----PNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FNU9_ECTSI	1.760e-71	64.19	RNA binding / nucleic acid binding n=2 Tax=Ectocar...	[more]
F0YDU7_AURAN	2.480e-50	49.31	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A6V1NUL1_HETAK	1.220e-46	47.93	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2DHN7_9STRA	3.470e-46	45.98	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2UV81_9STRA	3.720e-45	44.70	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S3NJ60_9STRA	7.410e-45	45.79	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A812Y221_SYMMI	3.910e-44	43.46	Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu...	[more]
A0A8J2X4I1_9STRA	6.860e-44	46.08	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A0S3S4Y7_PHAAN	1.400e-43	45.31	Uncharacterized protein n=2 Tax=Phaseoleae TaxID=1...	[more]
A0A176VE80_MARPO	3.580e-43	47.83	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FNU9
Preferred name	SNRPB2
PFAMs	RRM_1
Model size	1959
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11091,ko:K11094
KEGG Pathway	ko03040,map03040
KEGG Module	M00351,M00352
Hectar predicted targeting category	mitochondrion
GOs	GO:0000003,GO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0007538,GO:0007539,GO:0007542,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0017069,GO:0018992,GO:0018993,GO:0019099,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030237,GO:0030532,GO:0030619,GO:0030620,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034401,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0036002,GO:0040029,GO:0042802,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097157,GO:0097158,GO:0097159,GO:0097525,GO:0097549,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons	7
Evalue	8.02e-77
EggNOG OGs	KOG4206@1\|root,KOG4206@2759\|Eukaryota
Ec32 ortholog description	Nucleotide-binding alpha-beta plait domain
Ec32 ortholog	Ec-12_003280.1
Description	snRNA stem-loop binding
Cds size	837
COG category	J
BRITE	ko00000,ko00001,ko00002,ko03041