mRNA_D-mesarthrocarpus_Contig1008.7.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI) HSP 1 Score: 241 bits (614), Expect = 1.760e-71 Identity = 147/229 (64.19%), Postives = 159/229 (69.43%), Query Frame = 2 Query: 233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQ-------------PMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARKA 880
S+ SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPF+EK M+IQFAK+ESDV+TKK GTYV R+KRKLP P P + P A XXXXXXXX P+ P VPHNILYAT LPP ITQ+ML KLFEQY GF EARMAPGGQAFIEF D MQAG+ALNAL GF L++T LQL FARKA
Sbjct: 28 SLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGD----VPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN) HSP 1 Score: 183 bits (465), Expect = 2.480e-50 Identity = 107/217 (49.31%), Postives = 130/217 (59.91%), Query Frame = 2 Query: 233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPF++K M+I FAK +SDV++K +G++VAREKRK P P APPAT AP+ A P N+L+A DLP +ML LF+QY GFKE RM PG G AF+EF D QA +AL L F LT T L L FA++
Sbjct: 27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPK--------------APPATEALE---------------APKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK) HSP 1 Score: 174 bits (441), Expect = 1.220e-46 Identity = 104/217 (47.93%), Postives = 132/217 (60.83%), Query Frame = 2 Query: 233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
S+ S+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPFYEK M+I FAK +SD + K+ G Y +KR+ + + +A + T + + PV PA+ VPH IL+A +LP ++ML LF+QY+G+KE RM PG G AFIEF D MQAG AL L GF LT LQL +ARK
Sbjct: 29 SLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFTAVQQVEQPV------PAN-----VPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.470e-46 Identity = 103/224 (45.98%), Postives = 132/224 (58.93%), Query Frame = 2 Query: 212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
K + ++ SVFSQFGKIV+IVACRGLKL+GQAW+ F AT+A+ +MQGFPFY+K MKI F+KT+SD + K++GT+VAREKRK + P +E P A T P+ + AD P +IL+A +LP +ML LF+ Y+GFKE RM PG G AFIEF D + AG AL L GF LT TQ L L FA++
Sbjct: 35 KKQPLRKALYSVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASKISTPT--------------------PQILQAADLNAT--PSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAKR 236
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.720e-45 Identity = 97/217 (44.70%), Postives = 127/217 (58.53%), Query Frame = 2 Query: 233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
S+ S+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPFYEK M+I F+KT+SDV+ K++GTY R+++ P P P + P+ A A + P P+ IL+A LP +++L LF+QY GF E RM PG G AF+EF+D MQAG A+ L GF LT L L +A +
Sbjct: 22 SLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKRKAPPAPAPDAPAQPSAPFAQTTAA-----------------------AGKNNP---------PNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA) HSP 1 Score: 169 bits (427), Expect = 7.410e-45 Identity = 98/214 (45.79%), Postives = 131/214 (61.21%), Query Frame = 2 Query: 242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
S+FSQFGKI+D+V CRG++L+GQAW+ FA+ AT+A+++MQGFPFY+K M+I FAK++SD+I K +GT+V+REKRK E PPA A AP P P + P P N+L+A +LP Q ML LF+QY+G+KE RM PG G AFIEF D +QA +AL L GF+L+ T L L FA++
Sbjct: 35 SLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKR-------ESPPAANTDAAHQAPQKKQL---------------PTPPTNLTP--------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI) HSP 1 Score: 167 bits (422), Expect = 3.910e-44 Identity = 93/214 (43.46%), Postives = 133/214 (62.15%), Query Frame = 2 Query: 242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
++FSQ+GK+++IVAC+G++L+GQAW+V+ + S ATNA+R++QGF FY+K ++I FAKT+SD++ KK+GT+ R+KR + + + A APP PPVA P + VPH IL+A +LP ML LF+QY GF+E RMAPG G AFIEFQD +QAG+AL L GF L++ LQL + ++
Sbjct: 29 ALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQS-------SAMEDGARAAPPPAQYKE------------PPVAKTPKPIVNN----VPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA) HSP 1 Score: 166 bits (420), Expect = 6.860e-44 Identity = 100/217 (46.08%), Postives = 127/217 (58.53%), Query Frame = 2 Query: 233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+ ATNALRQMQGFPFY+K M+I FAK++SD+I K++GT+ REKRK P P + PA + + +PG PP ++LP + +ML LF+QY+GFKE RM PG G AF+EF D QA +A L GF LT T L L FA++
Sbjct: 27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAA---PAAAKALP-----------------APGDAPPPKVXXXX-------XXXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A0S3S4Y7_PHAAN (Uncharacterized protein n=2 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3S4Y7_PHAAN) HSP 1 Score: 167 bits (422), Expect = 1.400e-43 Identity = 111/245 (45.31%), Postives = 146/245 (59.59%), Query Frame = 2 Query: 149 PSLRYYWRIPSLAASMLVPRRKTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
P LR+ W I SL ML K S+ +VF+QFGKI++++A + LK KGQAWVVF E S A+NALRQMQGFPFY+K M+IQ+AKT+SDVI K +GT+V REKRK G + Q A +A + +P P A VP A P P+NIL+ +LP T +MLQ LF QY GFKE RM A G AF+E+ D MQ+ VA+ +L+GF +T + + +A+K
Sbjct: 32 PQLRFRWIIRSLNCRMLDVELKK-----SLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDK-GKK---RKDQHDANLAGMGLNPAYSGAYGATPTIPYPGGAKSMVPEAPAP----PNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 263
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO) HSP 1 Score: 165 bits (417), Expect = 3.580e-43 Identity = 110/230 (47.83%), Postives = 143/230 (62.17%), Query Frame = 2 Query: 212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVA------PPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
K S+ +VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPFY+K M+IQ+AK++SD ++K +GT+V+REKRK A R+R A PPA++ XXXXXXX P P+NIL+A +LP +M++ LF+Q+ GFKE RM A G AFIEF D MQA VAL AL F +T T +Q+ +A+K
Sbjct: 21 KKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEK-------AERKRREHQAEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXP----PNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1008.7.2 >prot_D-mesarthrocarpus_Contig1008.7.2 ID=prot_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=279bp MGVMGSRSARPSRIYRFSAENCVLFGVGRGHRGTPSLRYYWRIPSLAASMback to top mRNA from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1008.7.2 ID=mRNA_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=6934bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ >mRNA_D-mesarthrocarpus_Contig1008.7.2 ID=mRNA_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=837bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ (Discosporangium mesarthrocarpum MT17_79)back to top |