mRNA_D-mesarthrocarpus_Contig10075.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10075.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10075.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.1.1 vs. uniprot
Match: D7FS63_ECTSI (TGc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS63_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.470e-9
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:  166 INAVDLQPRQHFVSLM-GVLDGVLLPSSPPHLMHSYMRMHTTD-----------------GFASMD--VTDRKLFNAAQAQLLREEPSEGLGMHSKGIVDWDGRSEYFSHMANE 447
            + A  +  RQ FV+L  GVL GVL P  P  L+HSY+ +                     G+  +D  + D  LF+AA+A+L++E  +EG G+H  G+ +WDG S+ F  MA E
Sbjct:  290 LQAQGIPARQRFVNLSNGVLRGVLSPP-PARLLHSYVEVQLDGRVDGGPPDCSELGQDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGVNEWDGASDSFCQMAEE 402
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.1.1 vs. uniprot
Match: A0A6H5LB97_9PHAE (TGc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB97_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.660e-8
Identity = 40/115 (34.78%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:  166 INAVDLQPRQHFVSLM-GVLDGVLLPSSPPHLMHSYMRMHTTD------------------GFASMD--VTDRKLFNAAQAQLLREEPSEGLGMHSKGIVDWDGRSEYFSHMANE 447
            + A  +  RQ FV+L  GVL GVL P  P  L+HSY+ +                      G+  +D  + D  LF+AA+A+L++E  +EG G+H  G  +WDG  + F  MA E
Sbjct:   80 LQAQGIPARQRFVNLSNGVLRGVLSPP-PARLLHSYVEVKLDGQVGDGDPPGSSELGQDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTLDSFCQMAEE 193
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS63_ECTSI3.470e-935.96TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LB97_9PHAE8.660e-834.78TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10075contigD-mesarthrocarpus_Contig10075:398..956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FS63
PFAMsTransglut_core
Model size485
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.69e-10
EggNOG OGs2DPTS@1|root,2S6A9@2759|Eukaryota
DescriptionTransglutaminase-like superfamily
Cds size483
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.1173122-CDS-D-mesarthrocarpus_Contig10075:397..6671680789153.1173122-CDS-D-mesarthrocarpus_Contig10075:397..667Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10075 398..667 +
1680789153.1300573-CDS-D-mesarthrocarpus_Contig10075:743..9561680789153.1300573-CDS-D-mesarthrocarpus_Contig10075:743..956Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10075 744..956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10075.1.1prot_D-mesarthrocarpus_Contig10075.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10075 398..956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10075.1.1

>prot_D-mesarthrocarpus_Contig10075.1.1 ID=prot_D-mesarthrocarpus_Contig10075.1.1|Name=mRNA_D-mesarthrocarpus_Contig10075.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=161bp
SQREGSHNLQLLSRLGEVRIHRVFRRGHSRPENGSRSRAPAILSRHSLKP
WINPWINAVDLQPRQHFVSLMGVLDGVLLPSSPPHLMHSYMRMHTTDGFA
SMDVTDRKLFNAAQAQLLREEPSEGLGMHSKGIVDWDGRSEYFSHMANEA
GGQVFKDTGVI
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mRNA from alignment at D-mesarthrocarpus_Contig10075:398..956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10075.1.1 ID=mRNA_D-mesarthrocarpus_Contig10075.1.1|Name=mRNA_D-mesarthrocarpus_Contig10075.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=559bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:398..956+ (Discosporangium mesarthrocarpum MT17_79)
TCCCAAAGAGAAGGCTCTCACAATCTTCAACTATTGTCACGGCTCGGTGA
GGTTCGGATTCACCGGGTATTTCGACGAGGACACTCCAGACCAGAAAATG
GCAGCAGGTCGAGAGCGCCTGCAATCCTCAGCAGGCACTCTTTGAAACCG
TGGATAAACCCATGGATAAACGCCGTCGATTTGCAACCGCGGCAGCACTT
CGTTAGCCTAATGGGGGTGCTGGACGGAGTGTTGTTGCCCAGCTCCCCAC
CGCACTTAATGCACTCATACGTGGAGATTCGCCTCCCGAAAGAAGGTACT
GATGCCGGCAACACAGGTGATAGTAAGGGCCGCGGTGGGGGGGGAGATGA
GGATGCACACTACCGATGGGTTCGCATCGATGGACGTTACTGACCGCAAA
CTCTTCAACGCAGCGCAGGCGCAGTTGCTCCGAGAAGAGCCCTCGGAGGG
CCTAGGGATGCACTCCAAGGGGATAGTGGACTGGGATGGGCGGTCAGAAT
ACTTCAGCCACATGGCGAACGAGGCTGGGGGGCAGGTCTTTAAGGATACA
GGCGTCATA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10075:398..956+

>mRNA_D-mesarthrocarpus_Contig10075.1.1 ID=mRNA_D-mesarthrocarpus_Contig10075.1.1|Name=mRNA_D-mesarthrocarpus_Contig10075.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=483bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:398..956+ (Discosporangium mesarthrocarpum MT17_79)
TCCCAAAGAGAAGGCTCTCACAATCTTCAACTATTGTCACGGCTCGGTGA
GGTTCGGATTCACCGGGTATTTCGACGAGGACACTCCAGACCAGAAAATG
GCAGCAGGTCGAGAGCGCCTGCAATCCTCAGCAGGCACTCTTTGAAACCG
TGGATAAACCCATGGATAAACGCCGTCGATTTGCAACCGCGGCAGCACTT
CGTTAGCCTAATGGGGGTGCTGGACGGAGTGTTGTTGCCCAGCTCCCCAC
CGCACTTAATGCACTCATACATGAGGATGCACACTACCGATGGGTTCGCA
TCGATGGACGTTACTGACCGCAAACTCTTCAACGCAGCGCAGGCGCAGTT
GCTCCGAGAAGAGCCCTCGGAGGGCCTAGGGATGCACTCCAAGGGGATAG
TGGACTGGGATGGGCGGTCAGAATACTTCAGCCACATGGCGAACGAGGCT
GGGGGGCAGGTCTTTAAGGATACAGGCGTCATA
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