Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A6H5JLQ4_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ4_9PHAE)
HSP 1 Score: 125 bits (314), Expect = 4.420e-31
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 151 MDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKAS 339
MDGGLLEAAIGLGGQLSRWLKPTDFLPG+VVTFEMPSSGSKLFTLE++GHDEYTRKLLEDK S
Sbjct: 1 MDGGLLEAAIGLGGQLSRWLKPTDFLPGTVVTFEMPSSGSKLFTLEILGHDEYTRKLLEDKGS 63
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A7S1UHB1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB1_9STRA)
HSP 1 Score: 112 bits (280), Expect = 1.910e-26
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPA---IGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFY 345
LADD +SV+EPP+RNSG+VGGLFL RGKYKK+I A IG + + + GG G GG LSRWL PTDF PG+++TFE +G L ++VG+DEYTRK++E + +
Sbjct: 446 LADDVISVYEPPIRNSGIVGGLFLMRGKYKKHILAKDMIGNIE--------LPVGGG----KGGRGGCLSRWLVPTDFYPGAIITFEHGQTGQVLSAFKIVGYDEYTRKIVEGDRTLF 551
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A4D9D193_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D193_9STRA)
HSP 1 Score: 107 bits (267), Expect = 1.080e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 7 DDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFL-PGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLED 330
D T+S+FEP + NSGV GGLFLARGKYKKYI S K T + G ++ GLGG SR+L+P DFL VTFE+P++G++LFTL+ VG+DEYTRK+LED
Sbjct: 346 DSTVSIFEPSIPNSGVDGGLFLARGKYKKYI------------SNKATGNTG--KSWEGLGGSHSRFLRPEDFLLTAPPVTFEVPATGARLFTLKTVGYDEYTRKILED 440
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
F0YC17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC17_AURAN)
HSP 1 Score: 99.8 bits (247), Expect = 5.520e-22
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDK 333
L DDT+ V+EPPVRNSG+ GG+FL+RG+YKK+IP + + +K G G LSRWL+P DF G++V+FE P++G L T VV D+YT+++ E+K
Sbjct: 927 LGDDTIMVYEPPVRNSGLEGGVFLSRGRYKKHIP------DQRSIGKK------------GAGSVLSRWLRPADFFDGNIVSFEAPATGRLLQTFRVVRADDYTKRVEEEK 1019
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A8J2SX88_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX88_9STRA)
HSP 1 Score: 97.4 bits (241), Expect = 3.470e-21
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFYGG 351
L DDT+ VFEPP+RNSG+ G+FL R +YKKY+P +EG L G LSRWL+P DF G++V FE PS+G L T V+G D +TR++ +K GG
Sbjct: 418 LGDDTIMVFEPPIRNSGLEAGVFLGRQRYKKYVP---DQREGKGLKNH--------------GSVLSRWLRPADFYDGAIVPFEHPSTGRLLQTFRVIGADGFTRRIEAEKKQNAGG 517
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A7S2CTV8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTV8_9STRA)
HSP 1 Score: 89.0 bits (219), Expect = 3.190e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLED 330
LADDTLSVFEP VRNSG+ GG FL R +YKK+I GG A+ G LSRW +P+DF+ G+ VTFEMPS+G + +++ D T +++E+
Sbjct: 255 LADDTLSVFEPVVRNSGMKGGTFLNRMRYKKHITP---------------KQGGGRNASSRRSGLLSRWFRPSDFVKGADVTFEMPSTGCAVHRFKIIDIDPLTMQIIEE 349
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
UPI0014256511 (EF-hand domain-containing family member C2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256511)
HSP 1 Score: 55.8 bits (133), Expect = 1.270e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT 150
L+DDT++VFEPPVRNSG++GG FL R + KK GQ GT+LSE T
Sbjct: 456 LSDDTIAVFEPPVRNSGIIGGKFLERNRIKKP----GQPLFGTQLSEYYT 501
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A7M7RHU7_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RHU7_STRPU)
HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT 150
L+DDT++VFEPP RNSG++GG FL RG+ KK Q + GT LS+ T
Sbjct: 455 LSDDTVAVFEPPERNSGIIGGKFLERGRIKKP----NQARFGTELSDYFT 500
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
UPI0014551481 (EF-hand domain-containing family member C2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551481)
HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSE 141
L+DDT+SVFEPPVRNSG++GG FL R + KK Q + GT LSE
Sbjct: 457 LSDDTISVFEPPVRNSGIIGGKFLERNRIKKP----NQERFGTELSE 499
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match:
A0A5D6Y2J2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2J2_9STRA)
HSP 1 Score: 54.7 bits (130), Expect = 3.360e-6
Identity = 39/115 (33.91%), Postives = 53/115 (46.09%), Query Frame = 1
Query: 1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFY 345
L DDTL+VFEP ++NSGV GG FL RG+++K A G S ++ D AA DF G++V FE S LE++ DE T E + +
Sbjct: 1002 LEDDTLAVFEPRMKNSGVAGGRFLDRGRFRKCQDAA----HGGTSSRELQKDRSAYRAA--------------DFYVGAIVRFEFSPQQS----LELLAADEQTLSYCESHSESF 1094
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 4.42e-31 / Id = 93.65 Expect = 1.91e-26 / Id = 50.00 Expect = 1.08e-24 / Id = 55.05 Expect = 5.52e-22 / Id = 45.05 Expect = 3.47e-21 / Id = 43.59 Expect = 3.19e-18 / Id = 43.64 Expect = 1.27e-6 / Id = 58.00 Expect = 3.22e-6 / Id = 54.00 Expect = 3.22e-6 / Id = 59.57 Expect = 3.36e-6 / Id = 33.91 Sequence A0A6H5JLQ4_9PHAE A0A7S1UHB1_9STRA A0A4D9D193_9STRA F0YC17_AURAN A0A8J2SX88_9STRA A0A7S2CTV8_9STRA UPI0014256511 A0A7M7RHU7_STRPU UPI0014551481 A0A5D6Y2J2_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Seed ortholog 44056.XP_009038083.1 Preferred name USP39 PFAMs DUF1126,UCH,zf-UBP Model size 354 Max annot lvl 2759|Eukaryota KEGG ko ko:K12847 KEGG Pathway ko03040,map03040 KEGG Module M00354 Hectar predicted targeting category other localisation GOs GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575 Exons 2 Evalue 9.04e-23 EggNOG OGs KOG0043@1|root,KOG2026@1|root,KOG0043@2759|Eukaryota,KOG2026@2759|Eukaryota Description spliceosomal complex assembly Cds size 354 COG category S BRITE ko00000,ko00001,ko00002,ko03041
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789152.7685666-CDS-D-mesarthrocarpus_Contig10067:1179..1258 1680789152.7685666-CDS-D-mesarthrocarpus_Contig10067:1179..1258 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10067 1180..1258 + 1680789152.779607-CDS-D-mesarthrocarpus_Contig10067:1973..2248 1680789152.779607-CDS-D-mesarthrocarpus_Contig10067:1973..2248 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10067 1974..2248 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10067.2.1
>prot_D-mesarthrocarpus_Contig10067.2.1 ID=prot_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT back to top mRNA from alignment at D-mesarthrocarpus_Contig10067:1180..2248+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10067.2.1 ID=mRNA_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1069bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10067:1180..2248+ (Discosporangium mesarthrocarpum MT17_79)CTTGCGGATGATACTCTGAGCGTTTTTGAGCCGCCTGTACGGAACAGTGG
TGTTGTGGGAGGCCTCTTCCTAGCCCGAG GTGAAAAGATCCCCCCCCTCC
CCCCCCTCCCCTTTTGTGGCACGCATCATGCGGACAGGCAGGCAGGTGGT
TTGTCTTTTGCTTGCTGCCGTTTTTACAACCCCTTGGAGTCAGGGCTGGG
GTTAGGGTCAGGGCTGGGGCTAGGGTTGGGGTTGGGGTCGGGGTTAGGGG
TGGGGTTAGGGGTGGGGTTAGGGGTGGTGCTGGGGTTAGGGTTGGGGCAC
AACCACACCGCGAGCATGTGATGCAAACCCACAGGAAACCTGAAGTCCAC
ACACTGACACACTGGTAGGTAGGAAATCCATTCCAGAGGCGCAAGCTCAC
TCTCACTAGAGTGCAGTCAGTGCCTTGGAGTATTTGTTAACAAGCACCCA
GCCACTCGATTGTTTCACCCCATACCCCCCCTGCCACAACCGGATGACCA
GTAAGCACCCATCCGCCTATCTCTACTTACGGTGCAGTACATACAGCCTG
TCTCTATATGCAGCATTGTACATCCAGTTTGCCTCTACGCACAATAAAGT
ACATGCAGTCTATCTCAACCTACAGTAAAGTACATACACTACTCTAATGA
AGACTGGCACGCTTGCTGCACCTTTCTTCATCCGCACACGCTGAAGGGCA
TCCTAACCTAAACCTCCCCCTGTGTGCTGCTCGGCCTCCATCTATACTCC
CCTATCTCTCTACTGTATATCCCCTGCCACACCCCCTCCCGAAGGGAAGT
ACAAGAAGTACATCCCAGCTATTGGGCAGTGCAAGGAGGGCACACGCCTG
TCGGAGAAGATCACAATGGATGGTGGCCTCCTGGAGGCGGCCATCGGCCT
GGGTGGGCAGCTCAGTCGCTGGCTCAAACCCACCGATTTTCTCCCCGGGT
CGGTTGTCACGTTCGAGATGCCCTCCAGCGGGAGCAAGCTCTTCACGCTG
GAGGTGGTTGGGCATGACGAGTATACTAGGAAGCTCCTTGAGGACAAGGC
GAGCTTTTACGGGGGATAG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10067:1180..2248+
>mRNA_D-mesarthrocarpus_Contig10067.2.1 ID=mRNA_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10067:1180..2248+ (Discosporangium mesarthrocarpum MT17_79) back to top