mRNA_D-mesarthrocarpus_Contig10067.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10067.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10067.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A6H5JLQ4_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ4_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.420e-31
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query:  151 MDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKAS 339
            MDGGLLEAAIGLGGQLSRWLKPTDFLPG+VVTFEMPSSGSKLFTLE++GHDEYTRKLLEDK S
Sbjct:    1 MDGGLLEAAIGLGGQLSRWLKPTDFLPGTVVTFEMPSSGSKLFTLEILGHDEYTRKLLEDKGS 63          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A7S1UHB1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.910e-26
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPA---IGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFY 345
            LADD +SV+EPP+RNSG+VGGLFL RGKYKK+I A   IG  +        + + GG      G GG LSRWL PTDF PG+++TFE   +G  L   ++VG+DEYTRK++E   + +
Sbjct:  446 LADDVISVYEPPIRNSGIVGGLFLMRGKYKKHILAKDMIGNIE--------LPVGGG----KGGRGGCLSRWLVPTDFYPGAIITFEHGQTGQVLSAFKIVGYDEYTRKIVEGDRTLF 551          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A4D9D193_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D193_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.080e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    7 DDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFL-PGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLED 330
            D T+S+FEP + NSGV GGLFLARGKYKKYI            S K T + G  ++  GLGG  SR+L+P DFL     VTFE+P++G++LFTL+ VG+DEYTRK+LED
Sbjct:  346 DSTVSIFEPSIPNSGVDGGLFLARGKYKKYI------------SNKATGNTG--KSWEGLGGSHSRFLRPEDFLLTAPPVTFEVPATGARLFTLKTVGYDEYTRKILED 440          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: F0YC17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC17_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 5.520e-22
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDK 333
            L DDT+ V+EPPVRNSG+ GG+FL+RG+YKK+IP      +   + +K            G G  LSRWL+P DF  G++V+FE P++G  L T  VV  D+YT+++ E+K
Sbjct:  927 LGDDTIMVYEPPVRNSGLEGGVFLSRGRYKKHIP------DQRSIGKK------------GAGSVLSRWLRPADFFDGNIVSFEAPATGRLLQTFRVVRADDYTKRVEEEK 1019          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A8J2SX88_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX88_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.470e-21
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFYGG 351
            L DDT+ VFEPP+RNSG+  G+FL R +YKKY+P     +EG  L                 G  LSRWL+P DF  G++V FE PS+G  L T  V+G D +TR++  +K    GG
Sbjct:  418 LGDDTIMVFEPPIRNSGLEAGVFLGRQRYKKYVP---DQREGKGLKNH--------------GSVLSRWLRPADFYDGAIVPFEHPSTGRLLQTFRVIGADGFTRRIEAEKKQNAGG 517          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A7S2CTV8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTV8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.190e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLED 330
            LADDTLSVFEP VRNSG+ GG FL R +YKK+I                   GG   A+    G LSRW +P+DF+ G+ VTFEMPS+G  +   +++  D  T +++E+
Sbjct:  255 LADDTLSVFEPVVRNSGMKGGTFLNRMRYKKHITP---------------KQGGGRNASSRRSGLLSRWFRPSDFVKGADVTFEMPSTGCAVHRFKIIDIDPLTMQIIEE 349          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: UPI0014256511 (EF-hand domain-containing family member C2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256511)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT 150
            L+DDT++VFEPPVRNSG++GG FL R + KK     GQ   GT+LSE  T
Sbjct:  456 LSDDTIAVFEPPVRNSGIIGGKFLERNRIKKP----GQPLFGTQLSEYYT 501          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A7M7RHU7_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7RHU7_STRPU)

HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT 150
            L+DDT++VFEPP RNSG++GG FL RG+ KK      Q + GT LS+  T
Sbjct:  455 LSDDTVAVFEPPERNSGIIGGKFLERGRIKKP----NQARFGTELSDYFT 500          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: UPI0014551481 (EF-hand domain-containing family member C2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551481)

HSP 1 Score: 54.7 bits (130), Expect = 3.220e-6
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSE 141
            L+DDT+SVFEPPVRNSG++GG FL R + KK      Q + GT LSE
Sbjct:  457 LSDDTISVFEPPVRNSGIIGGKFLERNRIKKP----NQERFGTELSE 499          
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Match: A0A5D6Y2J2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2J2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.360e-6
Identity = 39/115 (33.91%), Postives = 53/115 (46.09%), Query Frame = 1
Query:    1 LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKITMDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGHDEYTRKLLEDKASFY 345
            L DDTL+VFEP ++NSGV GG FL RG+++K   A      G   S ++  D     AA              DF  G++V FE     S    LE++  DE T    E  +  +
Sbjct: 1002 LEDDTLAVFEPRMKNSGVAGGRFLDRGRFRKCQDAA----HGGTSSRELQKDRSAYRAA--------------DFYVGAIVRFEFSPQQS----LELLAADEQTLSYCESHSESF 1094          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10067.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLQ4_9PHAE4.420e-3193.65EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1UHB1_9STRA1.910e-2650.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D193_9STRA1.080e-2455.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
F0YC17_AURAN5.520e-2245.05Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SX88_9STRA3.470e-2143.59Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CTV8_9STRA3.190e-1843.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI00142565111.270e-658.00EF-hand domain-containing family member C2-like n=... [more]
A0A7M7RHU7_STRPU3.220e-654.00Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
UPI00145514813.220e-659.57EF-hand domain-containing family member C2-like n=... [more]
A0A5D6Y2J2_9STRA3.360e-633.91Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10067contigD-mesarthrocarpus_Contig10067:1180..2248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009038083.1
Preferred nameUSP39
PFAMsDUF1126,UCH,zf-UBP
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue9.04e-23
EggNOG OGsKOG0043@1|root,KOG2026@1|root,KOG0043@2759|Eukaryota,KOG2026@2759|Eukaryota
Descriptionspliceosomal complex assembly
Cds size354
COG categoryS
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.7685666-CDS-D-mesarthrocarpus_Contig10067:1179..12581680789152.7685666-CDS-D-mesarthrocarpus_Contig10067:1179..1258Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10067 1180..1258 +
1680789152.779607-CDS-D-mesarthrocarpus_Contig10067:1973..22481680789152.779607-CDS-D-mesarthrocarpus_Contig10067:1973..2248Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10067 1974..2248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10067.2.1prot_D-mesarthrocarpus_Contig10067.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10067 1180..2248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10067.2.1

>prot_D-mesarthrocarpus_Contig10067.2.1 ID=prot_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
LADDTLSVFEPPVRNSGVVGGLFLARGKYKKYIPAIGQCKEGTRLSEKIT
MDGGLLEAAIGLGGQLSRWLKPTDFLPGSVVTFEMPSSGSKLFTLEVVGH
DEYTRKLLEDKASFYGG*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10067:1180..2248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10067.2.1 ID=mRNA_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1069bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10067:1180..2248+ (Discosporangium mesarthrocarpum MT17_79)
CTTGCGGATGATACTCTGAGCGTTTTTGAGCCGCCTGTACGGAACAGTGG TGTTGTGGGAGGCCTCTTCCTAGCCCGAGGTGAAAAGATCCCCCCCCTCC CCCCCCTCCCCTTTTGTGGCACGCATCATGCGGACAGGCAGGCAGGTGGT TTGTCTTTTGCTTGCTGCCGTTTTTACAACCCCTTGGAGTCAGGGCTGGG GTTAGGGTCAGGGCTGGGGCTAGGGTTGGGGTTGGGGTCGGGGTTAGGGG TGGGGTTAGGGGTGGGGTTAGGGGTGGTGCTGGGGTTAGGGTTGGGGCAC AACCACACCGCGAGCATGTGATGCAAACCCACAGGAAACCTGAAGTCCAC ACACTGACACACTGGTAGGTAGGAAATCCATTCCAGAGGCGCAAGCTCAC TCTCACTAGAGTGCAGTCAGTGCCTTGGAGTATTTGTTAACAAGCACCCA GCCACTCGATTGTTTCACCCCATACCCCCCCTGCCACAACCGGATGACCA GTAAGCACCCATCCGCCTATCTCTACTTACGGTGCAGTACATACAGCCTG TCTCTATATGCAGCATTGTACATCCAGTTTGCCTCTACGCACAATAAAGT ACATGCAGTCTATCTCAACCTACAGTAAAGTACATACACTACTCTAATGA AGACTGGCACGCTTGCTGCACCTTTCTTCATCCGCACACGCTGAAGGGCA TCCTAACCTAAACCTCCCCCTGTGTGCTGCTCGGCCTCCATCTATACTCC CCTATCTCTCTACTGTATATCCCCTGCCACACCCCCTCCCGAAGGGAAGT ACAAGAAGTACATCCCAGCTATTGGGCAGTGCAAGGAGGGCACACGCCTG TCGGAGAAGATCACAATGGATGGTGGCCTCCTGGAGGCGGCCATCGGCCT GGGTGGGCAGCTCAGTCGCTGGCTCAAACCCACCGATTTTCTCCCCGGGT CGGTTGTCACGTTCGAGATGCCCTCCAGCGGGAGCAAGCTCTTCACGCTG GAGGTGGTTGGGCATGACGAGTATACTAGGAAGCTCCTTGAGGACAAGGC GAGCTTTTACGGGGGATAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10067:1180..2248+

>mRNA_D-mesarthrocarpus_Contig10067.2.1 ID=mRNA_D-mesarthrocarpus_Contig10067.2.1|Name=mRNA_D-mesarthrocarpus_Contig10067.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10067:1180..2248+ (Discosporangium mesarthrocarpum MT17_79)
CTTGCGGATGATACTCTGAGCGTTTTTGAGCCGCCTGTACGGAACAGTGG
TGTTGTGGGAGGCCTCTTCCTAGCCCGAGGGAAGTACAAGAAGTACATCC
CAGCTATTGGGCAGTGCAAGGAGGGCACACGCCTGTCGGAGAAGATCACA
ATGGATGGTGGCCTCCTGGAGGCGGCCATCGGCCTGGGTGGGCAGCTCAG
TCGCTGGCTCAAACCCACCGATTTTCTCCCCGGGTCGGTTGTCACGTTCG
AGATGCCCTCCAGCGGGAGCAAGCTCTTCACGCTGGAGGTGGTTGGGCAT
GACGAGTATACTAGGAAGCTCCTTGAGGACAAGGCGAGCTTTTACGGGGG
ATAG
back to top