mRNA_D-mesarthrocarpus_Contig10065.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10065.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10065.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10065.1.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.010e-30
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   76 EVEEDPALFVLPNDNTGKGIDYGILGRKTWDTLRDYCTKWGIKQAHLETIYSRFERTILRTEHLDFTKKPQFHVSLDFLA 315
            E E  P  FVL  D+TG GI+Y IL  ++W  L  YC KWGIKQAHLE+IYSRF RTI+RTEHLDFT KPQ+H SLDFLA
Sbjct:   30 EPEGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLA 109
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10065.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS65_ECTSI3.010e-3067.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10065contigD-mesarthrocarpus_Contig10065:920..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000720.1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.6459165-CDS-D-mesarthrocarpus_Contig10065:919..10451680789152.6459165-CDS-D-mesarthrocarpus_Contig10065:919..1045Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10065 920..1045 -
1680789152.6582434-CDS-D-mesarthrocarpus_Contig10065:1340..15291680789152.6582434-CDS-D-mesarthrocarpus_Contig10065:1340..1529Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10065 1341..1529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10065.1.1prot_D-mesarthrocarpus_Contig10065.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10065 920..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10065.1.1

>prot_D-mesarthrocarpus_Contig10065.1.1 ID=prot_D-mesarthrocarpus_Contig10065.1.1|Name=mRNA_D-mesarthrocarpus_Contig10065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=105bp
GSRQKSRNERGDKVTKDSDKEGRKGEVEEDPALFVLPNDNTGKGIDYGIL
GRKTWDTLRDYCTKWGIKQAHLETIYSRFERTILRTEHLDFTKKPQFHVS
LDFLA
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mRNA from alignment at D-mesarthrocarpus_Contig10065:920..1529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10065.1.1 ID=mRNA_D-mesarthrocarpus_Contig10065.1.1|Name=mRNA_D-mesarthrocarpus_Contig10065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=610bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10065:920..1529- (Discosporangium mesarthrocarpum MT17_79)
GGTAGTCGACAGAAGTCCAGGAACGAAAGAGGAGACAAAGTCACGAAGGA
TTCAGACAAGGAAGGGAGAAAGGGAGAAGTCGAAGAAGACCCAGCCCTTT
TTGTTCTTCCAAACGACAACACTGGCAAGGGTATTGACTACGGGATCCTA
GGCAGGAAGACCTGGGATACGTTACGAGATTATTGCACGGTGAGATTATT
GCAGTTCCCCGCGGTCTTCAACAAGAACTTCAGCCGTTGACCACCCTCGT
TTGTGTCACGTACGGAGCATCCTTAAAGGATTCAGATCTCTCTCTTTTCC
TTGCTTTCGAGTGACATGGAGGCTAGTGCCATAAGTGAGCAATTACGAAT
CGCTCCCTTATGGCACTAGTCTAAGCAGGGCGATGTCAATCCCCGTAATT
TTCTATGTCTGTGCACATACCATGATGGCAAGCGAACCCATTCCCCATTT
CTCGTCCCTGGTTGCTTCACACGAACACCTGCAGAAATGGGGCATCAAGC
AAGCCCACCTGGAGACGATCTACAGCCGCTTCGAGAGAACAATCTTAAGG
ACAGAGCACTTGGACTTCACCAAAAAGCCACAGTTTCATGTTAGCCTGGA
TTTTCTTGCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10065:920..1529-

>mRNA_D-mesarthrocarpus_Contig10065.1.1 ID=mRNA_D-mesarthrocarpus_Contig10065.1.1|Name=mRNA_D-mesarthrocarpus_Contig10065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10065:920..1529- (Discosporangium mesarthrocarpum MT17_79)
GGTAGTCGACAGAAGTCCAGGAACGAAAGAGGAGACAAAGTCACGAAGGA
TTCAGACAAGGAAGGGAGAAAGGGAGAAGTCGAAGAAGACCCAGCCCTTT
TTGTTCTTCCAAACGACAACACTGGCAAGGGTATTGACTACGGGATCCTA
GGCAGGAAGACCTGGGATACGTTACGAGATTATTGCACGAAATGGGGCAT
CAAGCAAGCCCACCTGGAGACGATCTACAGCCGCTTCGAGAGAACAATCT
TAAGGACAGAGCACTTGGACTTCACCAAAAAGCCACAGTTTCATGTTAGC
CTGGATTTTCTTGCG
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