Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Match:
A0A6H5JIJ8_9PHAE (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ8_9PHAE)
HSP 1 Score: 62.8 bits (151), Expect = 7.150e-9
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 4 ADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVDASVVQQLP 174
AD +V R LSRLDSSP LA +LR +WGV LWLAS+L +AGVT +S LP
Sbjct: 662 ADEIVSGLRPLSRLDSSPGPLAEELRFGLWGVVLWLASALGIVAGVTGGSSSCDSLP 718
BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Match:
D8LRL8_ECTSI (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL8_ECTSI)
HSP 1 Score: 62.4 bits (150), Expect = 9.880e-9
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 4 ADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVDASVVQQLP 174
AD +V R LSRLDSSP LA +LR +WGV LWLAS+ +AGVT AS LP
Sbjct: 569 ADEIVSGLRPLSRLDSSPGPLAEELRFGLWGVVLWLASAFGIVAGVTGGASSCDSLP 625
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.15e-9 / Id = 56.14 Expect = 9.88e-9 / Id = 56.14 Sequence A0A6H5JIJ8_9PHAE D8LRL8_ECTSI
Match Name E-value Identity Description
A0A6H5JIJ8_9PHAE 7.150e-9 56.14 Vacuolar protein sorting-associated protein 51 hom... [more] D8LRL8_ECTSI 9.880e-9 56.14 Vacuolar protein sorting-associated protein 51 hom... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 2880.D8LRL8 PFAMs Fox-1_C,RRM_1,Vps51 Model size 392 Max annot lvl 2759|Eukaryota KEGG rclass RC00002,RC00043 KEGG ko ko:K00928,ko:K14946,ko:K20296 KEGG Reaction R00480 KEGG Pathway ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 KEGG Module M00016,M00017,M00018,M00033,M00525,M00526,M00527 Hectar predicted targeting category other localisation Exons 2 Evalue 1.62e-09 EggNOG OGs KOG2346@1|root,KOG2346@2759|Eukaryota Ec32 ortholog description Cullin repeat-like-containing domain Ec32 ortholog Ec-12_000300.3 EC 2.7.2.4 Description endocytic recycling Cds size 390 COG category G BRITE ko00000,ko00001,ko00002,ko01000,ko03041,ko04131
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789150.8427787-CDS-D-mesarthrocarpus_Contig10044:42..178 1680789150.8427787-CDS-D-mesarthrocarpus_Contig10044:42..178 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10044 43..178 + 1680789150.8548613-CDS-D-mesarthrocarpus_Contig10044:1058..1312 1680789150.8548613-CDS-D-mesarthrocarpus_Contig10044:1058..1312 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10044 1059..1312 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10044.1.1
>prot_D-mesarthrocarpus_Contig10044.1.1 ID=prot_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
EADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVD back to top mRNA from alignment at D-mesarthrocarpus_Contig10044:43..1312+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10044.1.1 ID=mRNA_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10044:43..1312+ (Discosporangium mesarthrocarpum MT17_79)GAAGCCGACAGTGTGGTGGGCCACGCGAGGCTCCTGTCACGCCTGGACTC
ATCACCAAGGGTCTTGGCCAATCAGCTGCGGCTAGCGGTGTGGGGGGTCA
CCCTGTGGCTGGCCTCCTCGCTCTCCTCCATGGCAG GTGAGGGGAAAAAA
AACAAGAATAAAATAAAAACGAGGGAGGAAAGGAGGAAAGGGAGAGGAAG
CGGTAAAGCATGGAGAACAGCAAGTCTGAGATAGTAGGTGTGAGTAGCTT
TTGGTCCACATTTTTCCCTTTGGTGGCTCTTGGAGGGGAGGGGGGGTAGG
CAGAGGGTTGGGGTGAAAGTTGATACATTGAACCTCAGGGATAAGAGTGT
CACTGGTCACTCATGGGTGTGTGTAGAACAAGGAAACAGCATGGTAGTGT
GACTGTCGGCAGTATTGGTGCCTCCAGTATCATTATTGAAGCGCAGTGCA
GGTAGATCTGAGGTTAGGGTTAGTGCCGGGTGACCCATGTTCCAGATGGA
GTAGGGTGTAAAAACAGGATGCCTTTAGTGCAGGTCAGTGTAGAGTATTT
CATGGTGTATATGGTTGGGGTTAGGGTTAGGGTCAGGGGTTTGGCTCTAC
AGTACGGATGTGGTCTATGTAACCTGTTACAGATGTAGTGAAGCTGTGCT
GAACACGCAACGACATACAAGCTGTGGAAAACCATGAAACAGATTCTGCC
TCTGCATGATACCGCTTCTGCCCTTGTTGGGTAGGTGTGTGTGAGAGTAT
GGCACCACTGGGCACACACCAAGAAGGTGGTAGGTTAGGGGTTAGGGGTA
GTTTTTGCTCGATTTGTCCTTTTTTTTGTCCTTTCAAGCTTCCCGGTCCT
TAAGCCTACACTACCATAACGTGGTATATTCCCGCTGTAGAGCACAGTGC
GGTGGTCATATGGAGCCAGCCAGATAACCCATCCATCCGCTGTTTGGTTT
CTCCCTCACTCTGCGCCTACCCCTTGTTTTTCTACTTTTTTTTTGTCATT
GCCTCCCTTCGTACAGGGGTGACCGTGGACGCCTCTGTGGTGCAACAACT
CCCTTGCCCTGACGAGGAACACAACAGCAGTGGCCGTGGCGTCGGGGGCA
TGGGGGGCAGCGGCTACGATTCACCACCCCCAGGGCACTGGAGCCCAGAC
AACGGCAGCTCCGTCGCCTTCGACTTTTCAGCAGACCCATCGCTGTCCAT
CAAGCACATCATGGCCCTGGCGGGGAGGGGGGGCATTGAGGTGGAGGAGG
GCAAGGGTGGGTCTTGGGGC back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10044:43..1312+
>mRNA_D-mesarthrocarpus_Contig10044.1.1 ID=mRNA_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10044:43..1312+ (Discosporangium mesarthrocarpum MT17_79) back to top