mRNA_D-mesarthrocarpus_Contig10044.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10044.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10044.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Match: A0A6H5JIJ8_9PHAE (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.150e-9
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    4 ADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVDASVVQQLP 174
            AD +V   R LSRLDSSP  LA +LR  +WGV LWLAS+L  +AGVT  +S    LP
Sbjct:  662 ADEIVSGLRPLSRLDSSPGPLAEELRFGLWGVVLWLASALGIVAGVTGGSSSCDSLP 718
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BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Match: D8LRL8_ECTSI (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.880e-9
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    4 ADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVDASVVQQLP 174
            AD +V   R LSRLDSSP  LA +LR  +WGV LWLAS+   +AGVT  AS    LP
Sbjct:  569 ADEIVSGLRPLSRLDSSPGPLAEELRFGLWGVVLWLASAFGIVAGVTGGASSCDSLP 625
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIJ8_9PHAE7.150e-956.14Vacuolar protein sorting-associated protein 51 hom... [more]
D8LRL8_ECTSI9.880e-956.14Vacuolar protein sorting-associated protein 51 hom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10044contigD-mesarthrocarpus_Contig10044:43..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRL8
PFAMsFox-1_C,RRM_1,Vps51
Model size392
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00928,ko:K14946,ko:K20296
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.62e-09
EggNOG OGsKOG2346@1|root,KOG2346@2759|Eukaryota
Ec32 ortholog descriptionCullin repeat-like-containing domain
Ec32 orthologEc-12_000300.3
EC2.7.2.4
Descriptionendocytic recycling
Cds size390
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.8427787-CDS-D-mesarthrocarpus_Contig10044:42..1781680789150.8427787-CDS-D-mesarthrocarpus_Contig10044:42..178Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10044 43..178 +
1680789150.8548613-CDS-D-mesarthrocarpus_Contig10044:1058..13121680789150.8548613-CDS-D-mesarthrocarpus_Contig10044:1058..1312Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10044 1059..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10044.1.1prot_D-mesarthrocarpus_Contig10044.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10044 43..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10044.1.1

>prot_D-mesarthrocarpus_Contig10044.1.1 ID=prot_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
EADSVVGHARLLSRLDSSPRVLANQLRLAVWGVTLWLASSLSSMAGVTVD
ASVVQQLPCPDEEHNSSGRGVGGMGGSGYDSPPPGHWSPDNGSSVAFDFS
ADPSLSIKHIMALAGRGGIEVEEGKGGSWG
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mRNA from alignment at D-mesarthrocarpus_Contig10044:43..1312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10044.1.1 ID=mRNA_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10044:43..1312+ (Discosporangium mesarthrocarpum MT17_79)
GAAGCCGACAGTGTGGTGGGCCACGCGAGGCTCCTGTCACGCCTGGACTC
ATCACCAAGGGTCTTGGCCAATCAGCTGCGGCTAGCGGTGTGGGGGGTCA
CCCTGTGGCTGGCCTCCTCGCTCTCCTCCATGGCAGGTGAGGGGAAAAAA
AACAAGAATAAAATAAAAACGAGGGAGGAAAGGAGGAAAGGGAGAGGAAG
CGGTAAAGCATGGAGAACAGCAAGTCTGAGATAGTAGGTGTGAGTAGCTT
TTGGTCCACATTTTTCCCTTTGGTGGCTCTTGGAGGGGAGGGGGGGTAGG
CAGAGGGTTGGGGTGAAAGTTGATACATTGAACCTCAGGGATAAGAGTGT
CACTGGTCACTCATGGGTGTGTGTAGAACAAGGAAACAGCATGGTAGTGT
GACTGTCGGCAGTATTGGTGCCTCCAGTATCATTATTGAAGCGCAGTGCA
GGTAGATCTGAGGTTAGGGTTAGTGCCGGGTGACCCATGTTCCAGATGGA
GTAGGGTGTAAAAACAGGATGCCTTTAGTGCAGGTCAGTGTAGAGTATTT
CATGGTGTATATGGTTGGGGTTAGGGTTAGGGTCAGGGGTTTGGCTCTAC
AGTACGGATGTGGTCTATGTAACCTGTTACAGATGTAGTGAAGCTGTGCT
GAACACGCAACGACATACAAGCTGTGGAAAACCATGAAACAGATTCTGCC
TCTGCATGATACCGCTTCTGCCCTTGTTGGGTAGGTGTGTGTGAGAGTAT
GGCACCACTGGGCACACACCAAGAAGGTGGTAGGTTAGGGGTTAGGGGTA
GTTTTTGCTCGATTTGTCCTTTTTTTTGTCCTTTCAAGCTTCCCGGTCCT
TAAGCCTACACTACCATAACGTGGTATATTCCCGCTGTAGAGCACAGTGC
GGTGGTCATATGGAGCCAGCCAGATAACCCATCCATCCGCTGTTTGGTTT
CTCCCTCACTCTGCGCCTACCCCTTGTTTTTCTACTTTTTTTTTGTCATT
GCCTCCCTTCGTACAGGGGTGACCGTGGACGCCTCTGTGGTGCAACAACT
CCCTTGCCCTGACGAGGAACACAACAGCAGTGGCCGTGGCGTCGGGGGCA
TGGGGGGCAGCGGCTACGATTCACCACCCCCAGGGCACTGGAGCCCAGAC
AACGGCAGCTCCGTCGCCTTCGACTTTTCAGCAGACCCATCGCTGTCCAT
CAAGCACATCATGGCCCTGGCGGGGAGGGGGGGCATTGAGGTGGAGGAGG
GCAAGGGTGGGTCTTGGGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10044:43..1312+

>mRNA_D-mesarthrocarpus_Contig10044.1.1 ID=mRNA_D-mesarthrocarpus_Contig10044.1.1|Name=mRNA_D-mesarthrocarpus_Contig10044.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10044:43..1312+ (Discosporangium mesarthrocarpum MT17_79)
GAAGCCGACAGTGTGGTGGGCCACGCGAGGCTCCTGTCACGCCTGGACTC
ATCACCAAGGGTCTTGGCCAATCAGCTGCGGCTAGCGGTGTGGGGGGTCA
CCCTGTGGCTGGCCTCCTCGCTCTCCTCCATGGCAGGGGTGACCGTGGAC
GCCTCTGTGGTGCAACAACTCCCTTGCCCTGACGAGGAACACAACAGCAG
TGGCCGTGGCGTCGGGGGCATGGGGGGCAGCGGCTACGATTCACCACCCC
CAGGGCACTGGAGCCCAGACAACGGCAGCTCCGTCGCCTTCGACTTTTCA
GCAGACCCATCGCTGTCCATCAAGCACATCATGGCCCTGGCGGGGAGGGG
GGGCATTGAGGTGGAGGAGGGCAAGGGTGGGTCTTGGGGC
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