mRNA_D-mesarthrocarpus_Contig10040.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10040.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10040.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: D7FHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.930e-48
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QHEQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKS-SVSGKSRG 315
            Q E D RVLGSK+K DDWTFE+DMVFEHAMAEFEETD+LRWLKVASLLPGK+ EDVRHRYQRL YDVH+IEN VP D+KY  PK GKSLLAKVAAKS S S + RG
Sbjct:   83 QMEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGRG 188
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A6H5K4R8_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.750e-45
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    7 EQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKSSVSGKSRG 315
            E D RVLGSK+K DDWTFE+DMVFEHAMAEFEETD+LRWLKVASLLPGK+ EDVRHRYQRL YDVH+IEN VP D+KY  PK GKSLLAKVAAKS  S  SRG
Sbjct:   50 EPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSG-SASSRG 151
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A836CHK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.560e-15
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:   37 VKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKY-VKPKAGKSL 267
            + + +WTFEE+ VFE+ ++ F+E D  RW K+ASLLP K+ EDVR RYQ+L YDV RIE  +   ++Y VK + G+SL
Sbjct:   74 IDDGNWTFEEETVFENGLSTFDEDDLERWNKIASLLPEKSPEDVRRRYQKLMYDVTRIEAGMQVSLEYKVKARLGQSL 151
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A7S4D6G4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6G4_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 5.430e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   52 WTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIE 213
            WT EED++FEH +A F E D  RW K+  LLP K ++ +R RYQ+L +DV RIE
Sbjct:   65 WTKEEDVMFEHGVATFNEGDEERWAKIQKLLPSKTEDQIRKRYQKLLFDVSRIE 118
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A5D6XTB4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.570e-7
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   52 WTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSD 231
            WTFEED +FE+A+A++       W K+A+ LPGK  +D R+RY++L  DV  IE +   D
Sbjct:  225 WTFEEDKIFENALAKWSSDKPYSWPKIATALPGKTAKDARNRYEKLVGDVAIIETSGGDD 284
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A834GHP1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834GHP1_RHOSS)

HSP 1 Score: 56.6 bits (135), Expect = 6.080e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   31 SKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            S  ++  WT  ED  FEHA+  F +  + RW ++A LLPGK+QE+VR  Y+ L  DV  I++
Sbjct:   25 SATQSSTWTRPEDKAFEHALVVFPDGTSDRWRRIAELLPGKSQEEVRAHYEALVDDVFEIDS 86
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A835Q9A4_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q9A4_VANPL)

HSP 1 Score: 57.0 bits (136), Expect = 6.650e-7
Identity = 25/64 (39.06%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   22 VLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIE 213
            ++G+   +++W+ +E+ +FE+A+A F+E    RW KVA+++PGK  +DV++ Y+ L  DV  IE
Sbjct:   23 IIGNNKSSENWSQQENKLFENALAHFDEHTPNRWEKVAAMIPGKTVDDVKNHYEVLKEDVSCIE 86
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A5J5BI44_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BI44_9ASTE)

HSP 1 Score: 56.6 bits (135), Expect = 9.720e-7
Identity = 24/56 (42.86%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   49 DWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            +W+ E+D  FE+A+A + E  + RW K+AS++PGK+ E+++H Y+ L  DV++IE+
Sbjct:   10 EWSREQDKAFENALATYPEDSSDRWEKIASVVPGKSFEEIKHHYELLVDDVNQIES 65
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A1S2YTX2_CICAR (transcription factor SRM1-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YTX2_CICAR)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-6
Identity = 23/56 (41.07%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   49 DWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            +W+ EED+ FE+A+A + E D  RW K+A+ +PGK  +++++ Y+ L YD++ IE+
Sbjct:   13 EWSREEDIAFENALAIYPENDVNRWEKIAADVPGKTLQEIKYHYEVLVYDINLIES 68
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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A314XZK2_PRUYE (Transcription factor DIVARICATA n=7 Tax=Prunus TaxID=3754 RepID=A0A314XZK2_PRUYE)

HSP 1 Score: 55.5 bits (132), Expect = 2.270e-6
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   40 KNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            ++ +WT EE+  FE A+A F+E    RWLKVAS++PGK   DV  +YQ L  DV  IE+
Sbjct:   21 QSSEWTKEENKKFESALAMFDEKTPDRWLKVASMIPGKTVIDVIKQYQELEEDVSEIES 79
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ0_ECTSI1.930e-4879.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4R8_9PHAE3.750e-4580.58Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CHK7_9STRA6.560e-1551.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6G4_HETAK5.430e-1053.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6XTB4_9STRA4.570e-745.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A834GHP1_RHOSS6.080e-743.55Uncharacterized protein n=2 Tax=Rhododendron TaxID... [more]
A0A835Q9A4_VANPL6.650e-739.06Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A5J5BI44_9ASTE9.720e-742.86Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A1S2YTX2_CICAR1.680e-641.07transcription factor SRM1-like n=1 Tax=Cicer ariet... [more]
A0A314XZK2_PRUYE2.270e-649.15Transcription factor DIVARICATA n=7 Tax=Prunus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10040contigD-mesarthrocarpus_Contig10040:97..1331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHQ0
PFAMsMyb_DNA-binding
Model size408
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.17e-49
EggNOG OGs2E09X@1|root,2S7QZ@2759|Eukaryota
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006270.1
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Cds size408
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.4780698-CDS-D-mesarthrocarpus_Contig10040:96..2791680789150.4780698-CDS-D-mesarthrocarpus_Contig10040:96..279Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10040 97..279 -
1680789150.4907918-CDS-D-mesarthrocarpus_Contig10040:605..7221680789150.4907918-CDS-D-mesarthrocarpus_Contig10040:605..722Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10040 606..722 -
1680789150.5041516-CDS-D-mesarthrocarpus_Contig10040:1223..13311680789150.5041516-CDS-D-mesarthrocarpus_Contig10040:1223..1331Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10040 1224..1331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10040.1.1prot_D-mesarthrocarpus_Contig10040.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10040 97..1331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10040.1.1

>prot_D-mesarthrocarpus_Contig10040.1.1 ID=prot_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=136bp
QHEQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPG
KNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKSSVS
GKSRGGGGMGINGGGGGGGGGGATKAPRAKGQAKAK
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mRNA from alignment at D-mesarthrocarpus_Contig10040:97..1331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10040.1.1 ID=mRNA_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10040:97..1331- (Discosporangium mesarthrocarpum MT17_79)
CAGCATGAGCAGGATGGGAGGGTCCTTGGCAGCAAGGTCAAGAATGACGA
CTGGACCTTCGAGGAGGACATGGTCTTTGAGCATGCCATGGCAGAGTTTG
AGGAGACGGTGGGTCCTTCACTGTTCAAGCCTCTGACCCTCACCCTAACC
CTAAGCCTCGGGGCAGCATAAAAGGCATTTGCAGTTGAGGTCTACCCATG
GGGGTTGATGGATTTCTAATCGCACCCTCGGCAATTCGGTTGTCTGTGGC
TGAGCAATACCCCAGAGCATGCCTGCCTGAGCTCTGAGGGCTAACAAGGG
GTGCTCTAGAACCGATAGGAAAATGGTACAGAGCTGATATGAATGCTGTA
GAGCTTGTGAGAAAAACTCTGTGCACGTTCATGTGTGTGTATGCCCGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTGTCATTTTTATCCTGCAGATTGC
ACCGGTACCTAGGGGAGCAAAAACACTCCCTCTCCCTCCTGCACCTGTGC
TTGTTACTTGCCCTCAAGAATCGACCGTTGTCAAGATTGCTCGCAGTCAG
ATCGATAAGAGTCACCGATGCCCTCGATGCCCTGTGTGCCATGTACACCC
TGAGCGCAGGACGCCCTGCGGTGGCTGAAGGTGGCCTCCCTCCTCCCAGG
AAAGAACCAGGAGGATGTGCGGCATCGATACCAGAGGTTATACTACGATG
TCCATCGAATAGAGAACAATGTCCCGGTGAGGCCCTGGGGCAATTGCCAA
CAGCTTGGTGCTTGCCCATGGGCCGACCATAGAGGGTATACATCATTGCT
TTGTCGGAGGAGTGCATATGCATGGGAGCAAGCCCAGCCCAGCACTCAGT
AGCCGTCAACCCGTAATCCTGATTCCAAGCTTTACCCTATCCGTACACAC
CCCGGTGCCCTGAACACCATCCCTACACTGTGTACTGGCGCAATATGCAC
TGGCATTTCATTGTCATCATCATCATCATCATCATCATCACGTTAATCAT
TCTCATCATCATCATCACCATCAAATACCGTTGCCCCCCCTCCCCACAAA
AGAGTGACATGAAGTATGTCAAGCCCAAAGCAGGGAAGTCCCTGCTAGCC
AAAGTCGCAGCGAAAAGCTCGGTATCAGGGAAGTCCAGGGGTGGAGGGGG
GATGGGAATAAATGGGGGCGGGGGGGGCGGGGGGGGCGGGGGGGCAACCA
AGGCACCGCGGGCAAAGGGGCAGGCTAAGGCTAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10040:97..1331-

>mRNA_D-mesarthrocarpus_Contig10040.1.1 ID=mRNA_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10040:97..1331- (Discosporangium mesarthrocarpum MT17_79)
CAGCATGAGCAGGATGGGAGGGTCCTTGGCAGCAAGGTCAAGAATGACGA
CTGGACCTTCGAGGAGGACATGGTCTTTGAGCATGCCATGGCAGAGTTTG
AGGAGACGGACGCCCTGCGGTGGCTGAAGGTGGCCTCCCTCCTCCCAGGA
AAGAACCAGGAGGATGTGCGGCATCGATACCAGAGGTTATACTACGATGT
CCATCGAATAGAGAACAATGTCCCGAGTGACATGAAGTATGTCAAGCCCA
AAGCAGGGAAGTCCCTGCTAGCCAAAGTCGCAGCGAAAAGCTCGGTATCA
GGGAAGTCCAGGGGTGGAGGGGGGATGGGAATAAATGGGGGCGGGGGGGG
CGGGGGGGGCGGGGGGGCAACCAAGGCACCGCGGGCAAAGGGGCAGGCTA
AGGCTAAG
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