mRNA_D-mesarthrocarpus_Contig1004.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1004.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig1004.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.220e-17
Identity = 75/240 (31.25%), Postives = 114/240 (47.50%), Query Frame = 2 
Query:   14 EAADGHQEELASMTTCRDDLHGQLKDLKAQLSEQSAISKRLQSEVGILAREKEDQAR--------SLRLDKGTEAWNGHVMSMKSLDNRQTTQTPTGQEHRESYSAGEMGLEASXXXXXXXXXXXXQVQ---------------------------IPLVAMAELQKRHTIGSARDKAEITELRGELDEACTRVQQLSDQERLLKATLRELEEEIKAERELSTGDSSTLNVAYLKTALVR 628
            EA +GH EE++++   RD+L  QLK  KAQ +E S I++RLQ E+  + + + +  R          R D G   W G  +           +     E   +    + G+  S                                          + L+A+AEL++RHT      +AE+TE+R EL EA  RV+QLS QE LLK+T+R LE ++  ER L +G+++ +NVAYLK+A+VR
Sbjct: 1418 EAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGNGSWDARADGG---WAGQQLLXXXXXXXXXARLQATDEPAAALGVSKGGVPLSEGGVPPLPAAGLGGMPSASASPXXXXXXXXXXXFAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVR 1654
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.300e-14
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2 
Query:  386 VAMAELQKRHTIGSARDKAEITELRGELDEACTRVQQLSDQERLLKATLRELEEEIKAERELSTGDSSTLNVAYLKTALVR 628
            +A+AEL++RHT      +AE+TE+R EL EA  RV+QLS QE LLK+T+R LE ++  ER L +G+++ +NVAYLK+A+VR
Sbjct:    1 MAVAELERRHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVR 81
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSR4_9PHAE4.220e-1731.25GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LGD5_ECTSI4.300e-1453.09GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1004contigD-mesarthrocarpus_Contig1004:12581..15861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1222
Hectar predicted targeting categoryother localisation
Exons7
Cds size582
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1004.8.1prot_D-mesarthrocarpus_Contig1004.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1004 13203..15812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.3546636-UTR-D-mesarthrocarpus_Contig1004:12580..128051680789150.3546636-UTR-D-mesarthrocarpus_Contig1004:12580..12805Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1004 12581..12805 -
1680789150.3676643-UTR-D-mesarthrocarpus_Contig1004:12836..132021680789150.3676643-UTR-D-mesarthrocarpus_Contig1004:12836..13202Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1004 12837..13202 -
1680789150.441673-UTR-D-mesarthrocarpus_Contig1004:15812..158611680789150.441673-UTR-D-mesarthrocarpus_Contig1004:15812..15861Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1004 15813..15861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.382348-CDS-D-mesarthrocarpus_Contig1004:13202..132691680789150.382348-CDS-D-mesarthrocarpus_Contig1004:13202..13269Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 13203..13269 -
1680789150.3932471-CDS-D-mesarthrocarpus_Contig1004:13871..140241680789150.3932471-CDS-D-mesarthrocarpus_Contig1004:13871..14024Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 13872..14024 -
1680789150.4023767-CDS-D-mesarthrocarpus_Contig1004:14391..145241680789150.4023767-CDS-D-mesarthrocarpus_Contig1004:14391..14524Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 14392..14524 -
1680789150.4104202-CDS-D-mesarthrocarpus_Contig1004:14907..149641680789150.4104202-CDS-D-mesarthrocarpus_Contig1004:14907..14964Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 14908..14964 -
1680789150.4215848-CDS-D-mesarthrocarpus_Contig1004:15303..153941680789150.4215848-CDS-D-mesarthrocarpus_Contig1004:15303..15394Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 15304..15394 -
1680789150.4298823-CDS-D-mesarthrocarpus_Contig1004:15731..158121680789150.4298823-CDS-D-mesarthrocarpus_Contig1004:15731..15812Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 15732..15812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1004.8.1

>prot_D-mesarthrocarpus_Contig1004.8.1 ID=prot_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=194bp
MTTCRDDLHGQLKDLKAQLSEQSAISKRLQSEVGILAREKEDQARSLRLD
KGTEAWNGHVMSMKSLDNRQTTQTPTGQEHRESYSAGEMGLEASEESEKQ
QPTQPTQVQIPLVAMAELQKRHTIGSARDKAEITELRGELDEACTRVQQL
SDQERLLKATLRELEEEIKAERELSTGDSSTLNVAYLKTALVR*
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mRNA from alignment at D-mesarthrocarpus_Contig1004:12581..15861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1004.8.1 ID=mRNA_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3281bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:12581..15861- (Discosporangium mesarthrocarpum MT17_79)
GTGTCCGGTGTAGGAGGCAGCTGATGGTCATCAGGAGGAATTGGCATCAA
TGACCACATGCAGGGATGACTTGCACGGGCAGCTAAAGGACCTCAAGGCA
CAGCTGAGTGAACAGTCTGCTATTTCCAAGGTGTGGGTCATGGTGTTTGA
TGGTTTGACGGTAGCCTATAGCACTTTCGAGTTTTTCAGGCTATGAAGGG
TTAGCGATTCAAAGTAAGAATAATTAAGTGAATAAAGTTAGAAGTAGTGG
ACCTTGCAGTATAAACACCTATTAAAATGAACGCCTTCACAACAAAGGTC
AAGCTCATAGTTCTATGTAGATAAATAATGAAGAGTACCAAGTTTAAAAT
TTGTACAACTTCTAATCACTGGCACAGTCCTGCACATTTTTTACCTCAAC
TTCCTGCCCTCCCTCACTGTGGCCTTAACCCTGTGCTAACCCTAACCCTA
ACCCTTTCTCAATGCAGCGATTGCAGTCAGAGGTTGGCATTTTGGCCAGG
GAGAAGGAGGACCAGGCACGCAGTCTGAGGCTCGACAAAGGCACTGAAGC
TTGGAATGGTAAGAGCAATAGGGTGGAGGCTGACCTGTCAGTGACTGACT
TAGTAGTTTCTATAAAGTATTCACTCGTTGGGATTTGAGGGGGGACAAGT
TGGCTGTGTGATTCCCAGTGAGGATAGATTGGGCCTTTATTAGTGTTGGT
AGAGCTGTGACACTAGTAGTGCCATTTAAGTCTTGCGCGTTGCCTCTTAA
GTGTGTGGCACAATAAAAGATGTAGATGATCCCTTTGCCCTTGACCCTAT
ACCCTTTATCCTTGGAGACAGTACTGAGTTTTGATGTACTGCACTGTACT
TAGTATTCGAATAATTTCTCACAACTTTGGCTGCTGCCCTTCCCTAGGAC
ATGTCATGAGCATGAAGAGCTTGGACAACAGACAAACCACACAAACCCCT
ACAGGTGGGTGTTGTGCATTTTATGAACGGAAAACATGCAAGTCTTGTCA
ATATTGATCAATCCAACACACCTTGTACAGGAAAATGTGTTTCAAAAAGA
TGCTTCAGAGAATGTGCCGCCTACAGTCATATATAGTAGAAGACGAGGTA
GGTCACAAGCACTATCTTCACATACCGCAGAAAGAGACAGAGTGTTCCTC
TTGGTAGTGCCCTTAAAAAATTATCTCATGGCACTTCAGAGTAACTTGGT
CGTTGATACTGTACGGCGTGTCAGTGAGACCAAGTGTGGTATACCTCAGT
GGAAGCAGACCAGTTCTAATCTAACGAAGTCACTGCACTAAAGAGGCAAA
GACTGCTTGTGTGTTTCCTTTTTGTGCCCTGCTGAAGGTCAAGAGCATCG
GGAGAGTTATAGTGCTGGAGAGATGGGGTTAGAGGCTTCAGAGGAAAGTG
AAAAGCAACAGCCAACACAACCAACACAAGTTCAAATTCCTCTGGTGGCA
ATGGCCGAGCTGCAGAAGAGGTGGGCAATGACTGGGACTTACTGCACAGG
GTAGGAAATAAAGTATCACGTACTCAGCATTTCAAAGAAAAAACAGTCAA
CAGATTTTCGCCTGGAGTTGGCGGTGATTAGAGCTCTCGGGCTGTGGATA
TTGTTGGGTAATGACTCGTGGCAGATGACCCTTTGTTTTGCACTTGCAGA
CTGGTACTATGGTAATGAACAGACTGGCTCCAACAGTAGAGCTCTAGAAG
TTCACACTTGGCACTTTGAAGAACTAACCCTAAACCTAACGGTAGTATCT
ACTTCAAAGGGCGTGAAAGGTCGTTTTTCTTGTACTCTGAAGCTCTTGGC
GCACAATATTCACGGCTGGATCGATTGTTGTCGCAAGGCACACAATTGGC
AGTGCCAGAGATAAGGCGGAGATCACCGAGCTCCGCGGTGAGCTGGATGA
GGCCTGCACACGAGTGCAACAGCTATCAGATCAGGAGAGACTCCTCAAGG
CCACCCTGCGTGAACTTGAAGAGGAGATCAAGGCCGAAAGGTTGGTGATT
GGTCATGACATTGTGGTTGTGGTAATGGTATGTTCGCAGCCATGGTAGTA
GGGATTCACACAGTATGAAGCTATGCAGCATACCTTACAACACCTTGGGA
AGCGATGTGAAGTAGCTCTACTCTACTACTTGGAACTACTAGGCAAGCTT
TACCTTGGGAATCCCATACAGCTTTCGAAACCTGTGCCAAAAACGAGTCC
AAGACTGCATGAAAAAGACTGGGAGGGGTAGTCTTCAAAGTCCTGGTCAT
CCAATATTTGTGTGTAGGTTTGAAGTTCCCTGTCTTCCACTCGCTCAATG
ATTTTGCTACGGTCAACTTGGCTCTCCAATAGCTCAGCACTCATCGTTTG
TTGGTCGTTGAAGCTCTGGATTTGATTGGTCGATAAGCACTTCGAACACA
TTCAATTGGATAATGTCTATGTACTTGCAGGTATGAAAGTACGTACGTGT
GCGTGTATGGACTTACGTGTAACTGCGTACAAATTACTTTGTTGTAGAAT
GTAACACATAAGGTATAGCTCACACTGGCAGCCTAGGGAATCACAAACAC
GTCTTCTTGAGTCCACCAACCAAGCCTGCCAAAAAATTCCAGGGAGCTGA
GCACTGGAGATTCATCAACACTGAATGTGGCCTACCTCAAGACAGCACTT
GTCCGGTAGGATATGATGAGATTGTGTTGTGATCCACAAGTGGTGGATAC
ACAACACAATTCATGGTAGAAGAGTTGTGTGCAAAAAGAAAAATCAAGGA
TTAAGAGTTCCTTGTAAACTCAGTGCCTTCCTCAGTGTTAAGCATTCGGG
GTTACAGTTAGGGTTAGGGTTAGCTCTACAGTACTTCCCAGTCGGAACCA
TTTTATAAAGAATGAATTGATGCACAGCTATGCGCCCACACAGCTATGCA
CCCGCAGCCATGTGTCTATGTAACAGCAACAGGGACTTTGCCCCATGAAA
GAGAGGTGCTGTCAGGCCCACCTCTCTCACCCGGCCCTTTCCCACAGATG
GGAAATTTAGCGCATTCTCCTTACAGTGTATTTCATACAGTTCACTGTGT
GCTGGCTACCACTTCAAAATGCGTAACTGTAACTCACTGCTACTTAGAGT
GACAGTCAAGAACAAGATGCTACTGTGGTTTTGCTGTGCAACAAGGACTG
GGTGTGCGTTGTGCTGTTTGGCGCTGTGTTCTACTGTACTGCCCACAGAT
ATATGGCCACAAGAGATACACGAGAACAGCGCAGCCTCCTGCGCGTAATA
TCAACCATGCTCCACCTCTCTGCAGAAGAAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:12581..15861-

>mRNA_D-mesarthrocarpus_Contig1004.8.1 ID=mRNA_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=582bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:12581..15861- (Discosporangium mesarthrocarpum MT17_79)
ATGACCACATGCAGGGATGACTTGCACGGGCAGCTAAAGGACCTCAAGGC
ACAGCTGAGTGAACAGTCTGCTATTTCCAAGCGATTGCAGTCAGAGGTTG
GCATTTTGGCCAGGGAGAAGGAGGACCAGGCACGCAGTCTGAGGCTCGAC
AAAGGCACTGAAGCTTGGAATGGACATGTCATGAGCATGAAGAGCTTGGA
CAACAGACAAACCACACAAACCCCTACAGGTCAAGAGCATCGGGAGAGTT
ATAGTGCTGGAGAGATGGGGTTAGAGGCTTCAGAGGAAAGTGAAAAGCAA
CAGCCAACACAACCAACACAAGTTCAAATTCCTCTGGTGGCAATGGCCGA
GCTGCAGAAGAGGCACACAATTGGCAGTGCCAGAGATAAGGCGGAGATCA
CCGAGCTCCGCGGTGAGCTGGATGAGGCCTGCACACGAGTGCAACAGCTA
TCAGATCAGGAGAGACTCCTCAAGGCCACCCTGCGTGAACTTGAAGAGGA
GATCAAGGCCGAAAGGGAGCTGAGCACTGGAGATTCATCAACACTGAATG
TGGCCTACCTCAAGACAGCACTTGTCCGGTAG
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