Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Match:
A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 4.220e-17
Identity = 75/240 (31.25%), Postives = 114/240 (47.50%), Query Frame = 2
Query: 14 EAADGHQEELASMTTCRDDLHGQLKDLKAQLSEQSAISKRLQSEVGILAREKEDQAR--------SLRLDKGTEAWNGHVMSMKSLDNRQTTQTPTGQEHRESYSAGEMGLEASXXXXXXXXXXXXQVQ---------------------------IPLVAMAELQKRHTIGSARDKAEITELRGELDEACTRVQQLSDQERLLKATLRELEEEIKAERELSTGDSSTLNVAYLKTALVR 628
EA +GH EE++++ RD+L QLK KAQ +E S I++RLQ E+ + + + + R R D G W G + + E + + G+ S + L+A+AEL++RHT +AE+TE+R EL EA RV+QLS QE LLK+T+R LE ++ ER L +G+++ +NVAYLK+A+VR
Sbjct: 1418 EAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGNGSWDARADGG---WAGQQLLXXXXXXXXXARLQATDEPAAALGVSKGGVPLSEGGVPPLPAAGLGGMPSASASPXXXXXXXXXXXFAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVR 1654
BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Match:
D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)
HSP 1 Score: 80.1 bits (196), Expect = 4.300e-14
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 386 VAMAELQKRHTIGSARDKAEITELRGELDEACTRVQQLSDQERLLKATLRELEEEIKAERELSTGDSSTLNVAYLKTALVR 628
+A+AEL++RHT +AE+TE+R EL EA RV+QLS QE LLK+T+R LE ++ ER L +G+++ +NVAYLK+A+VR
Sbjct: 1 MAVAELERRHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVR 81
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.8.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.22e-17 / Id = 31.25 Expect = 4.30e-14 / Id = 53.09 Sequence A0A6H5KSR4_9PHAE D8LGD5_ECTSI
Match Name E-value Identity Description
A0A6H5KSR4_9PHAE 4.220e-17 31.25 GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more] D8LGD5_ECTSI 4.300e-14 53.09 GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1222 Hectar predicted targeting category other localisation Exons 7 Cds size 582
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789150.3546636-UTR-D-mesarthrocarpus_Contig1004:12580..12805 1680789150.3546636-UTR-D-mesarthrocarpus_Contig1004:12580..12805 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1004 12581..12805 - 1680789150.3676643-UTR-D-mesarthrocarpus_Contig1004:12836..13202 1680789150.3676643-UTR-D-mesarthrocarpus_Contig1004:12836..13202 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1004 12837..13202 - 1680789150.441673-UTR-D-mesarthrocarpus_Contig1004:15812..15861 1680789150.441673-UTR-D-mesarthrocarpus_Contig1004:15812..15861 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1004 15813..15861 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789150.382348-CDS-D-mesarthrocarpus_Contig1004:13202..13269 1680789150.382348-CDS-D-mesarthrocarpus_Contig1004:13202..13269 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 13203..13269 - 1680789150.3932471-CDS-D-mesarthrocarpus_Contig1004:13871..14024 1680789150.3932471-CDS-D-mesarthrocarpus_Contig1004:13871..14024 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 13872..14024 - 1680789150.4023767-CDS-D-mesarthrocarpus_Contig1004:14391..14524 1680789150.4023767-CDS-D-mesarthrocarpus_Contig1004:14391..14524 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 14392..14524 - 1680789150.4104202-CDS-D-mesarthrocarpus_Contig1004:14907..14964 1680789150.4104202-CDS-D-mesarthrocarpus_Contig1004:14907..14964 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 14908..14964 - 1680789150.4215848-CDS-D-mesarthrocarpus_Contig1004:15303..15394 1680789150.4215848-CDS-D-mesarthrocarpus_Contig1004:15303..15394 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 15304..15394 - 1680789150.4298823-CDS-D-mesarthrocarpus_Contig1004:15731..15812 1680789150.4298823-CDS-D-mesarthrocarpus_Contig1004:15731..15812 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1004 15732..15812 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1004.8.1
>prot_D-mesarthrocarpus_Contig1004.8.1 ID=prot_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=194bp
MTTCRDDLHGQLKDLKAQLSEQSAISKRLQSEVGILAREKEDQARSLRLD back to top mRNA from alignment at D-mesarthrocarpus_Contig1004:12581..15861-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1004.8.1 ID=mRNA_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3281bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:12581..15861- (Discosporangium mesarthrocarpum MT17_79)GTGTCCGGTGTAGGAGGCAGCTGATGGTCATCAGGAGGAATTGGCATCA A
TGACCACATGCAGGGATGACTTGCACGGGCAGCTAAAGGACCTCAAGGCA
CAGCTGAGTGAACAGTCTGCTATTTCCAAG GTGTGGGTCATGGTGTTTGA
TGGTTTGACGGTAGCCTATAGCACTTTCGAGTTTTTCAGGCTATGAAGGG
TTAGCGATTCAAAGTAAGAATAATTAAGTGAATAAAGTTAGAAGTAGTGG
ACCTTGCAGTATAAACACCTATTAAAATGAACGCCTTCACAACAAAGGTC
AAGCTCATAGTTCTATGTAGATAAATAATGAAGAGTACCAAGTTTAAAAT
TTGTACAACTTCTAATCACTGGCACAGTCCTGCACATTTTTTACCTCAAC
TTCCTGCCCTCCCTCACTGTGGCCTTAACCCTGTGCTAACCCTAACCCTA
ACCCTTTCTCAATGCAGCGATTGCAGTCAGAGGTTGGCATTTTGGCCAGG
GAGAAGGAGGACCAGGCACGCAGTCTGAGGCTCGACAAAGGCACTGAAGC
TTGGAATG GTAAGAGCAATAGGGTGGAGGCTGACCTGTCAGTGACTGACT
TAGTAGTTTCTATAAAGTATTCACTCGTTGGGATTTGAGGGGGGACAAGT
TGGCTGTGTGATTCCCAGTGAGGATAGATTGGGCCTTTATTAGTGTTGGT
AGAGCTGTGACACTAGTAGTGCCATTTAAGTCTTGCGCGTTGCCTCTTAA
GTGTGTGGCACAATAAAAGATGTAGATGATCCCTTTGCCCTTGACCCTAT
ACCCTTTATCCTTGGAGACAGTACTGAGTTTTGATGTACTGCACTGTACT
TAGTATTCGAATAATTTCTCACAACTTTGGCTGCTGCCCTTCCCTAGGAC
ATGTCATGAGCATGAAGAGCTTGGACAACAGACAAACCACACAAACCCCT
ACAG GTGGGTGTTGTGCATTTTATGAACGGAAAACATGCAAGTCTTGTCA
ATATTGATCAATCCAACACACCTTGTACAGGAAAATGTGTTTCAAAAAGA
TGCTTCAGAGAATGTGCCGCCTACAGTCATATATAGTAGAAGACGAGGTA
GGTCACAAGCACTATCTTCACATACCGCAGAAAGAGACAGAGTGTTCCTC
TTGGTAGTGCCCTTAAAAAATTATCTCATGGCACTTCAGAGTAACTTGGT
CGTTGATACTGTACGGCGTGTCAGTGAGACCAAGTGTGGTATACCTCAGT
GGAAGCAGACCAGTTCTAATCTAACGAAGTCACTGCACTAAAGAGGCAAA
GACTGCTTGTGTGTTTCCTTTTTGTGCCCTGCTGAAGGTCAAGAGCATCG
GGAGAGTTATAGTGCTGGAGAGATGGGGTTAGAGGCTTCAGAGGAAAGTG
AAAAGCAACAGCCAACACAACCAACACAAGTTCAAATTCCTCTGGTGGCA
ATGGCCGAGCTGCAGAAGAG GTGGGCAATGACTGGGACTTACTGCACAGG
GTAGGAAATAAAGTATCACGTACTCAGCATTTCAAAGAAAAAACAGTCAA
CAGATTTTCGCCTGGAGTTGGCGGTGATTAGAGCTCTCGGGCTGTGGATA
TTGTTGGGTAATGACTCGTGGCAGATGACCCTTTGTTTTGCACTTGCAGA
CTGGTACTATGGTAATGAACAGACTGGCTCCAACAGTAGAGCTCTAGAAG
TTCACACTTGGCACTTTGAAGAACTAACCCTAAACCTAACGGTAGTATCT
ACTTCAAAGGGCGTGAAAGGTCGTTTTTCTTGTACTCTGAAGCTCTTGGC
GCACAATATTCACGGCTGGATCGATTGTTGTCGCAAGGCACACAATTGGC
AGTGCCAGAGATAAGGCGGAGATCACCGAGCTCCGCGGTGAGCTGGATGA
GGCCTGCACACGAGTGCAACAGCTATCAGATCAGGAGAGACTCCTCAAGG
CCACCCTGCGTGAACTTGAAGAGGAGATCAAGGCCGAAAG GTTGGTGATT
GGTCATGACATTGTGGTTGTGGTAATGGTATGTTCGCAGCCATGGTAGTA
GGGATTCACACAGTATGAAGCTATGCAGCATACCTTACAACACCTTGGGA
AGCGATGTGAAGTAGCTCTACTCTACTACTTGGAACTACTAGGCAAGCTT
TACCTTGGGAATCCCATACAGCTTTCGAAACCTGTGCCAAAAACGAGTCC
AAGACTGCATGAAAAAGACTGGGAGGGGTAGTCTTCAAAGTCCTGGTCAT
CCAATATTTGTGTGTAGGTTTGAAGTTCCCTGTCTTCCACTCGCTCAATG
ATTTTGCTACGGTCAACTTGGCTCTCCAATAGCTCAGCACTCATCGTTTG
TTGGTCGTTGAAGCTCTGGATTTGATTGGTCGATAAGCACTTCGAACACA
TTCAATTGGATAATGTCTATGTACTTGCAGGTATGAAAGTACGTACGTGT
GCGTGTATGGACTTACGTGTAACTGCGTACAAATTACTTTGTTGTAGAAT
GTAACACATAAGGTATAGCTCACACTGGCAGCCTAGGGAATCACAAACAC
GTCTTCTTGAGTCCACCAACCAAGCCTGCCAAAAAATTCCAGGGAGCTGA
GCACTGGAGATTCATCAACACTGAATGTGGCCTACCTCAAGACAGCACTT
GTCCGGTAG GATATGATGAGATTGTGTTGTGATCCACAAGTGGTGGATAC
ACAACACAATTCATGGTAGAAGAGTTGTGTGCAAAAAGAAAAATCAAGGA
TTAAGAGTTCCTTGTAAACTCAGTGCCTTCCTCAGTGTTAAGCATTCGGG
GTTACAGTTAGGGTTAGGGTTAGCTCTACAGTACTTCCCAGTCGGAACCA
TTTTATAAAGAATGAATTGATGCACAGCTATGCGCCCACACAGCTATGCA
CCCGCAGCCATGTGTCTATGTAACAGCAACAGGGACTTTGCCCCATGAAA
GAGAGGTGCTGTCAGGCCCACCTCTCTCACCCGGCCCTTTCCCACAGATG
GGAAATTTAGCGCATTCTCCTTACA GTGTATTTCATACAGTTCACTGTGT
GCTGGCTACCACTTCAAAATGCGTAACTGTAACTCACTGCTACTTAGAGT
GACAGTCAAGAACAAGATGCTACTGTGGTTTTGCTGTGCAACAAGGACTG
GGTGTGCGTTGTGCTGTTTGGCGCTGTGTTCTACTGTACTGCCCACAGAT
ATATGGCCACAAGAGATACACGAGAACAGCGCAGCCTCCTGCGCGTAATA
TCAACCATGCTCCACCTCTCTGCAGAAGAAA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:12581..15861-
>mRNA_D-mesarthrocarpus_Contig1004.8.1 ID=mRNA_D-mesarthrocarpus_Contig1004.8.1|Name=mRNA_D-mesarthrocarpus_Contig1004.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=582bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:12581..15861- (Discosporangium mesarthrocarpum MT17_79) back to top