mRNA_D-mesarthrocarpus_Contig10031.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10031.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10031.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.790e-14
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVARFVLMLLQYNFPFVSHVRGDMTACLQQLSTQGMEEDSSGHSRGSKGRGSPAKAVDLLDSVLIGTEAER 354
            G +    SRALSR            G G    A +D EEE+G EED  V R VLMLLQYNFPF+SHVRGDM A L++LS Q + E    H+             + L   LIG +++R
Sbjct:  534 GGFFGGFSRALSR------------GYGHAAAASKDGEEEIGREEDVQVTRLVLMLLQYNFPFISHVRGDMAAILEELSAQALAEKEGQHADN-------GDFHETLHGALIGADSDR 632
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI7_ECTSI8.790e-1442.37Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10031contigD-mesarthrocarpus_Contig10031:2660..4488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKI7
Preferred nameTBC1D23
PFAMsRabGAP-TBC,Rhodanese
Model size998
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons2
Evalue1.64e-16
EggNOG OGsKOG3636@1|root,KOG3636@2759|Eukaryota
Descriptionembryonic brain development
Cds size390
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..32661680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..3266Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10031 2660..3266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..34131680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..3413Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10031 3267..3413 -
1680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..44881680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..4488Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10031 4246..4488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10031.2.1prot_D-mesarthrocarpus_Contig10031.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10031 3267..4488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10031.2.1

>prot_D-mesarthrocarpus_Contig10031.2.1 ID=prot_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVA
RFVLMLLQYNFPFVSHVRGDMTACLQQLSTQGMEEDSSGHSRGSKGRGSP
AKAVDLLDSVLIGTEAERYWLFIPISTLA*
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mRNA from alignment at D-mesarthrocarpus_Contig10031:2660..4488-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1829bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79)
GGCAACTGGACAGAGGCGTTGTCGAGGGCGTTATCTCGCCAGGGATCGCC
GGAGAGGCCAGACCGAGGCAGTGGGGGGGGCGGCTGGGGAGGTGTGGCGT
TCAGGGATTCGGAGGAGGAGGTGGGGAGTGAGGAGGATGCAAGCGTGGCA
CGTTTTGTCCTGATGCTGCTCCAGTACAACTTCCCCTTCGTCAGCCACGT
GAGGGGCGACATGACAGCCTGCCTGCAGCAGTTGAGCACGCAGGTAGGTA
GGTGTGTGTGTGTACCTGTTGAGGAATTTTCATCCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCTGCAGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCAACTGCGGTCTCTGCCGGAGTTGCGAGAATAGTTGCGCAACGGCAG
TTACAACGGCGGTTACAGCGGCAGTTTCAGCGGTACTGTTGCTGCTTTTG
CAGAGATTGGACACCGAAGGGTTAATCTGGTGCAGAACCGGTTAGCGTGG
GCGTTGACAGTGCTGGGCTTATGTCGATCCAAGGTTTTACGTGCCCCCTC
GCAAGTGCGAGAGCACCTGTGCAGAGAGAGAGGGGAAAAAACACCCTGCG
AACCTTAGGGTCGATCCCTGTCCGCGAACGCGGCTGCGGTACTTAGACTG
GAGTCCTAGCGTACCCCTGCTGACAGGGGGGTTGGAGCCGAAAGGAAAGA
CCACACCAGCGGGGATAAGAAAAAGAGCCACAGGTTGGAGGCCGTACGTA
GATTTACTGCGGCATAGGGAGATAACAAACAAGGTCAATCTGATCGTTGT
AATTGGTGAAAAGTAAGGGTTGGGGTTGATTGAGAGGCCGGTTTTGAAGT
CCAATACGTGCTTGTCCAACAAGAGTGACTTTCTGTTTTCTGCCTCTCCA
ACAAGAGTGACTTTCCATTTCTGCCTCTCCAACAAGAGTGACCTTCCCAT
CTCTGCCTCTCTAACACAACAATAGTATTTATTTATAATGATATAACAAC
AATGATGATCACCTCTACTGCACATATTGGTCTGGAGTGACATTCCCGTT
TCCCTCTGCGTGTGCCTCTACCTAGGGCATGGAGGAGGACTCGTCTGGGC
ATAGCAGAGGAAGCAAGGGAAGGGGCAGTCCGGCCAAGGCTGTTGACCTG
CTCGACAGCGTTCTGATTGGCACTGAAGCGGAGAGGTACTGGCTCTTTAT
TCCAATAAGTACGTTAGCGTAAGGGTAATGATAAGATAGAAACACCGCGC
GCTTCTAAGAGCCTGTGCAACATGCACACACAAGACGTGTGGTACATTTT
CAAGAATGCCATGCCTGACCCCGCCTCTGTGTGCTGCAGTGGTGGTAAGG
TGTGAATGGACCTCACTGCATCTTTCCTTCACACGACGACTTGATTCTGT
TAATGTCAAGGGGAGAGAGAGAGAAAGAGAAAGAGAAAAAGAAAAAGAGA
GAAAGAGAAAGAGAGAAAGAGAGATAATCCAGAAGAGAGAGGTAGAGAGA
GAGAGAGACTACTACCAAGCAGAGCTAAAAATAAGGGGGGGAAACAAGCA
GTGAGAAACAAGCAGTGAGAAACAAGCAGTGAGAAAGTGCTTCGACAGGC
AGCATGTTTTCAAGGCACGCTGACTGTAGTCCAACAATCGTAGGACCACT
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACAAACTTTCAAGC
GCGAGTGTGTTTTCGAGGAAAGCTATCCCCCCTCCCCTGACAAGAACAAG
AACGCTTTGGAAATCCAAGCGATTTTTTCCAAGAAAAGTGCCCCTACGCC
AAAGGCTATCAAATAGGAACAACTCCCGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10031:2660..4488-

>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79)
GGCAACTGGACAGAGGCGTTGTCGAGGGCGTTATCTCGCCAGGGATCGCC
GGAGAGGCCAGACCGAGGCAGTGGGGGGGGCGGCTGGGGAGGTGTGGCGT
TCAGGGATTCGGAGGAGGAGGTGGGGAGTGAGGAGGATGCAAGCGTGGCA
CGTTTTGTCCTGATGCTGCTCCAGTACAACTTCCCCTTCGTCAGCCACGT
GAGGGGCGACATGACAGCCTGCCTGCAGCAGTTGAGCACGCAGGGCATGG
AGGAGGACTCGTCTGGGCATAGCAGAGGAAGCAAGGGAAGGGGCAGTCCG
GCCAAGGCTGTTGACCTGCTCGACAGCGTTCTGATTGGCACTGAAGCGGA
GAGGTACTGGCTCTTTATTCCAATAAGTACGTTAGCGTAA
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