mRNA_D-mesarthrocarpus_Contig10031.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10031.2.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10031.2.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.790e-14
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 1

Query:    1 GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVARFVLMLLQYNFPFVSHVRGDMTACLQQLSTQGMEEDSSGHSRGSKGRGSPAKAVDLLDSVLIGTEAER 354
            G +    SRALSR            G G    A +D EEE+G EED  V R VLMLLQYNFPF+SHVRGDM A L++LS Q + E    H+             + L   LIG +++R
Sbjct:  534 GGFFGGFSRALSR------------GYGHAAAASKDGEEEIGREEDVQVTRLVLMLLQYNFPFISHVRGDMAAILEELSAQALAEKEGQHADN-------GDFHETLHGALIGADSDR 632

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FKI7_ECTSI	8.790e-14	42.37	Rab-GAP TBC domain-containing protein n=2 Tax=Ecto...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig10031	contig	D-mesarthrocarpus_Contig10031:2660..4488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FKI7
Preferred name	TBC1D23
PFAMs	RabGAP-TBC,Rhodanese
Model size	998
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons	2
Evalue	1.64e-16
EggNOG OGs	KOG3636@1\|root,KOG3636@2759\|Eukaryota
Description	embryonic brain development
Cds size	390
COG category	S

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..3266	1680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..3266	Discosporangium mesarthrocarpum MT17_79	UTR	D-mesarthrocarpus_Contig10031 2660..3266 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..3413	1680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..3413	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig10031 3267..3413 -
1680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..4488	1680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..4488	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig10031 4246..4488 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig10031.2.1	prot_D-mesarthrocarpus_Contig10031.2.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig10031 3267..4488 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10031:2660..4488-
coding sequence from alignment at D-mesarthrocarpus_Contig10031:2660..4488-

protein sequence of mRNA_D-mesarthrocarpus_Contig10031.2.1

>prot_D-mesarthrocarpus_Contig10031.2.1 ID=prot_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVA
RFVLMLLQYNFPFVSHVRGDMTACLQQLSTQGMEEDSSGHSRGSKGRGSP
AKAVDLLDSVLIGTEAERYWLFIPISTLA*

mRNA from alignment at D-mesarthrocarpus_Contig10031:2660..4488-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1829bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79)
GGCAACTGGACAGAGGCGTTGTCGAGGGCGTTATCTCGCCAGGGATCGCC
GGAGAGGCCAGACCGAGGCAGTGGGGGGGGCGGCTGGGGAGGTGTGGCGT
TCAGGGATTCGGAGGAGGAGGTGGGGAGTGAGGAGGATGCAAGCGTGGCA
CGTTTTGTCCTGATGCTGCTCCAGTACAACTTCCCCTTCGTCAGCCACGT
GAGGGGCGACATGACAGCCTGCCTGCAGCAGTTGAGCACGCAGGTAGGTA
GGTGTGTGTGTGTACCTGTTGAGGAATTTTCATCCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCTGCAGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCAACTGCGGTCTCTGCCGGAGTTGCGAGAATAGTTGCGCAACGGCAG
TTACAACGGCGGTTACAGCGGCAGTTTCAGCGGTACTGTTGCTGCTTTTG
CAGAGATTGGACACCGAAGGGTTAATCTGGTGCAGAACCGGTTAGCGTGG
GCGTTGACAGTGCTGGGCTTATGTCGATCCAAGGTTTTACGTGCCCCCTC
GCAAGTGCGAGAGCACCTGTGCAGAGAGAGAGGGGAAAAAACACCCTGCG
AACCTTAGGGTCGATCCCTGTCCGCGAACGCGGCTGCGGTACTTAGACTG
GAGTCCTAGCGTACCCCTGCTGACAGGGGGGTTGGAGCCGAAAGGAAAGA
CCACACCAGCGGGGATAAGAAAAAGAGCCACAGGTTGGAGGCCGTACGTA
GATTTACTGCGGCATAGGGAGATAACAAACAAGGTCAATCTGATCGTTGT
AATTGGTGAAAAGTAAGGGTTGGGGTTGATTGAGAGGCCGGTTTTGAAGT
CCAATACGTGCTTGTCCAACAAGAGTGACTTTCTGTTTTCTGCCTCTCCA
ACAAGAGTGACTTTCCATTTCTGCCTCTCCAACAAGAGTGACCTTCCCAT
CTCTGCCTCTCTAACACAACAATAGTATTTATTTATAATGATATAACAAC
AATGATGATCACCTCTACTGCACATATTGGTCTGGAGTGACATTCCCGTT
TCCCTCTGCGTGTGCCTCTACCTAGGGCATGGAGGAGGACTCGTCTGGGC
ATAGCAGAGGAAGCAAGGGAAGGGGCAGTCCGGCCAAGGCTGTTGACCTG
CTCGACAGCGTTCTGATTGGCACTGAAGCGGAGAGGTACTGGCTCTTTAT
TCCAATAAGTACGTTAGCGTAAGGGTAATGATAAGATAGAAACACCGCGC
GCTTCTAAGAGCCTGTGCAACATGCACACACAAGACGTGTGGTACATTTT
CAAGAATGCCATGCCTGACCCCGCCTCTGTGTGCTGCAGTGGTGGTAAGG
TGTGAATGGACCTCACTGCATCTTTCCTTCACACGACGACTTGATTCTGT
TAATGTCAAGGGGAGAGAGAGAGAAAGAGAAAGAGAAAAAGAAAAAGAGA
GAAAGAGAAAGAGAGAAAGAGAGATAATCCAGAAGAGAGAGGTAGAGAGA
GAGAGAGACTACTACCAAGCAGAGCTAAAAATAAGGGGGGGAAACAAGCA
GTGAGAAACAAGCAGTGAGAAACAAGCAGTGAGAAAGTGCTTCGACAGGC
AGCATGTTTTCAAGGCACGCTGACTGTAGTCCAACAATCGTAGGACCACT
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACAAACTTTCAAGC
GCGAGTGTGTTTTCGAGGAAAGCTATCCCCCCTCCCCTGACAAGAACAAG
AACGCTTTGGAAATCCAAGCGATTTTTTCCAAGAAAAGTGCCCCTACGCC
AAAGGCTATCAAATAGGAACAACTCCCGG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10031:2660..4488-

>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79)
GGCAACTGGACAGAGGCGTTGTCGAGGGCGTTATCTCGCCAGGGATCGCC
GGAGAGGCCAGACCGAGGCAGTGGGGGGGGCGGCTGGGGAGGTGTGGCGT
TCAGGGATTCGGAGGAGGAGGTGGGGAGTGAGGAGGATGCAAGCGTGGCA
CGTTTTGTCCTGATGCTGCTCCAGTACAACTTCCCCTTCGTCAGCCACGT
GAGGGGCGACATGACAGCCTGCCTGCAGCAGTTGAGCACGCAGGGCATGG
AGGAGGACTCGTCTGGGCATAGCAGAGGAAGCAAGGGAAGGGGCAGTCCG
GCCAAGGCTGTTGACCTGCTCGACAGCGTTCTGATTGGCACTGAAGCGGA
GAGGTACTGGCTCTTTATTCCAATAAGTACGTTAGCGTAA