mRNA_D-mesarthrocarpus_Contig10023.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10023.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10023.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YN33_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN33_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.310e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   85 RLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEA 345
            R   P +R     R+ G GP+ VSK + RA LE  FDRP++ A RALGVS+TI+KRLCR+ GI +WPYRQ+  +   ++K  ++++A
Sbjct:   15 RKKSPAQREPLHVRYYGNGPKSVSKHMTRAKLEALFDRPVEHAARALGVSSTIIKRLCRRHGIPKWPYRQLLRLETQIAKQEQILQA 101
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.430e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
            RG SKRV    LE YF+ P++E  + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct:  100 RGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 157
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.350e-14
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
            RG SKRV    LE YF+ P+++  + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct:  102 RGFSKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 159
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.700e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  154 SKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
            SK + R  LE+ F+RP+ EA + LGVSTTIVKRLCR+ GI +WP+R +  V + MS
Sbjct:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMS 56
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YTV5_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  163 VNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSV 306
            + RA LE  FDRP+++A RALGVS+TI+KRLCR+ GI +WPYRQ+  +
Sbjct:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 48
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.810e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRM 336
            R VS+RV+ AVLE  ++ PL  A + L VS T++K+LCR+ GI RWP+RQI S++K M K + M
Sbjct:    6 REVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEM 69
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A3F2RQU3_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQU3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.780e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   88 LVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
            LV PP R  S            ++ +N  +L+ +F+RPL +A  + GV TT++K++CR+ GIS WPYR+IC + K+++
Sbjct:   15 LVMPPTRPISN----------ATRNINFGMLQPHFERPLQQAADSFGVCTTLLKKICRRNGISNWPYRKICGLRKSIA 82
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A421GA03_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GA03_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-9
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  178 LETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAKNPQNLRKLKVKMRWLEDQMQHLFADPTPLGNF 447
            L  +F +P+ E  R LG+ TT +K++CR++GI RWP+RQI S+ + +    ++   A  PQ   K + ++  L+++ + + A+P   G  
Sbjct:   95 LRAHFGKPIVEVARELGICTTFLKKICRRLGIKRWPHRQIRSLARTIQMLEQVEAVATTPQEKNKYETQIAQLKEKQRAVMANPDANGKL 184
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: K8YW24_NANGC (Rwp-rk domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW24_NANGC)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-9
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:  157 KRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAK--------NPQNLRKLKVKMRWLEDQMQHLFADPTPLGN 444
            K V+   L  YFDRP+++A RALG+ +T++K++CR+  I RWPYRQ+ S+++ +   +  +  A+        +P+   +L  ++R LE +   L    T LG+
Sbjct:  325 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGS 428
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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A0Q3PUU3_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3PUU3_BRADI)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-9
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  109 SQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRR 333
            SQ E++  G   R   K V    L+ YF   L +A R+LGV  T +KR+CR+ GISRWP+R+I  VN+A+SK RR
Sbjct:  496 SQPEKKKTG---RKAGKPVGLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKVNRALSKIRR 567
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YN33_9STRA1.310e-1647.13RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
D8LJT6_ECTSI2.430e-1463.79Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K0H9_9PHAE6.350e-1462.07RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YUV9_9STRA9.700e-1355.36RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YTV5_9STRA1.280e-1260.42RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835YW93_9STRA3.810e-1151.56RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A3F2RQU3_9STRA1.780e-1038.46RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]
A0A421GA03_9STRA1.420e-932.22RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]
K8YW24_NANGC2.190e-933.65Rwp-rk domain-containing protein n=1 Tax=Nannochlo... [more]
A0A0Q3PUU3_BRADI2.250e-948.00Uncharacterized protein n=2 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10023contigD-mesarthrocarpus_Contig10023:68..1414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra80034
PFAMsRWP-RK
Model size492
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.71e-13
EggNOG OGs2BIGW@1|root,2S1ED@2759|Eukaryota,3QEU5@4776|Peronosporales
DescriptionRWP-RK domain
Cds size426
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.555604-CDS-D-mesarthrocarpus_Contig10023:67..1811680789148.555604-CDS-D-mesarthrocarpus_Contig10023:67..181Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10023 68..181 -
1680789148.5669398-CDS-D-mesarthrocarpus_Contig10023:1036..13481680789148.5669398-CDS-D-mesarthrocarpus_Contig10023:1036..1348Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10023 1037..1348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.5765274-UTR-D-mesarthrocarpus_Contig10023:1348..14141680789148.5765274-UTR-D-mesarthrocarpus_Contig10023:1348..1414Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10023 1349..1414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10023.1.1prot_D-mesarthrocarpus_Contig10023.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10023 68..1348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10023.1.1

>prot_D-mesarthrocarpus_Contig10023.1.1 ID=prot_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp
MTPRPRRLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAG
RALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAKNPQNL
RKLKVKMRWLEDQMQHLFADPTPLGNFGAYSQADPNQSEEE*
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mRNA from alignment at D-mesarthrocarpus_Contig10023:68..1414-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1347bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)
TAGCACGTTACGGCGGCTGGGAGACGCCGTGCTCGTGCAGTGGTCTACGG
CCTCAGCTAACCAAGGATGACTCCACGACCGAGGCGCCTGGTACATCCCC
CCAAACGCTCCCAGTCGGAACAGCGTTTCCGGGGGATGGGTCCAAGAGGC
GTATCCAAGCGGGTCAACCGAGCTGTCCTCGAAACTTACTTCGACCGTCC
CCTCGACGAAGCCGGCAGAGCCCTGGGGGTCTCAACCACTATCGTGAAAC
GCCTGTGCAGGAAGATGGGCATCAGCAGATGGCCCTACCGCCAGATATGC
AGCGTCAACAAGGCCATGTCGAAGACGAGAAGGATGATCGAGGCCGCGAA
AAACCCCCAAAACCTTCGCAAACTCAAGGTGATAACGATATCGTACTCTT
TGTGCCGGTCCCTCTGTGAGCTCCAGTGGCGAGTTTAGATACCGATGAAT
ATCTACTAAGCACAAAATACTCGTCTTTGCACCCCTGCCTTGATGCAGAC
ATCGATAACCGGGATCTTCTCGGCCACTTGCAAACATGGACACCAATCTT
GTTCACCGGAATAAACGATCAGGGACATGATATCTTGTACGTGGCGAGCT
GCCCTCGTCCAAAAAAAAGACAACTTAACAGCTACAACTACCTTAATCGG
GCTTGAATACGGTATCTGAAGCATCGCGATCCTGGCCAGATCTTCCAACA
CGAGACTGCCTCGAGAAAGTGCTCGAAGCTCTGTTATGTTTTTTCTCCCA
CCTTCCATCACTCCTTCCCTTTCGGATTGCGTTTCATCAAATGGTTCCCG
ATGCCCCTTGGGTCCCTGGCTGTCCCCTTCCCTCCCAATCATCCATCCTG
CCAAACATACTTTCTAACTTTGATAACCCCTATCCAAATTCCCTCACTCC
TTCTGACCTGTTTCCTACCCAACCATCCCGCCAAACCGTTTCCCACTTTC
ATCTCTCCCATCCAAAATCCATCAACCCCTTGGCCTGTTTCATGCTCAAC
CCTCCCGCCAAACCCACTTTTTTTCCCTTTGATAACCCCCATTTAAATCC
CCTCACCCCTCTGACCTGTTTCCGATCTAACCATCACGCCAAACCCGCCT
CTCACTTTCAACTCCGGCCTAAATTCCCTGAAATCCTATTGCCTATTTCC
TTCCCTATCTTCCCTACAACCCCCTTTGCTTCTCTTTGATAACCCCCGTC
TAACTTCCCTCCCCCCCTCTGCGTTCCCCACAGGTCAAGATGCGATGGTT
GGAGGATCAGATGCAGCATCTGTTCGCTGACCCAACCCCCCTGGGCAACT
TTGGGGCCTACTCCCAAGCTGATCCAAACCAGTCAGAGGAAGAATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10023:68..1414-

>mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)
ATGACTCCACGACCGAGGCGCCTGGTACATCCCCCCAAACGCTCCCAGTC
GGAACAGCGTTTCCGGGGGATGGGTCCAAGAGGCGTATCCAAGCGGGTCA
ACCGAGCTGTCCTCGAAACTTACTTCGACCGTCCCCTCGACGAAGCCGGC
AGAGCCCTGGGGGTCTCAACCACTATCGTGAAACGCCTGTGCAGGAAGAT
GGGCATCAGCAGATGGCCCTACCGCCAGATATGCAGCGTCAACAAGGCCA
TGTCGAAGACGAGAAGGATGATCGAGGCCGCGAAAAACCCCCAAAACCTT
CGCAAACTCAAGGTCAAGATGCGATGGTTGGAGGATCAGATGCAGCATCT
GTTCGCTGACCCAACCCCCCTGGGCAACTTTGGGGCCTACTCCCAAGCTG
ATCCAAACCAGTCAGAGGAAGAATAG
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