mRNA_D-mesarthrocarpus_Contig10023.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YN33_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN33_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.310e-16 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 85 RLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEA 345
R P +R R+ G GP+ VSK + RA LE FDRP++ A RALGVS+TI+KRLCR+ GI +WPYRQ+ + ++K ++++A
Sbjct: 15 RKKSPAQREPLHVRYYGNGPKSVSKHMTRAKLEALFDRPVEHAARALGVSSTIIKRLCRRHGIPKWPYRQLLRLETQIAKQEQILQA 101
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.430e-14 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
RG SKRV LE YF+ P++E + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct: 100 RGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 157
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 6.350e-14 Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
RG SKRV LE YF+ P+++ + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct: 102 RGFSKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 159
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 9.700e-13 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 154 SKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
SK + R LE+ F+RP+ EA + LGVSTTIVKRLCR+ GI +WP+R + V + MS
Sbjct: 1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMS 56
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YTV5_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV5_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.280e-12 Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 163 VNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSV 306
+ RA LE FDRP+++A RALGVS+TI+KRLCR+ GI +WPYRQ+ +
Sbjct: 1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 48
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.810e-11 Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRM 336
R VS+RV+ AVLE ++ PL A + L VS T++K+LCR+ GI RWP+RQI S++K M K + M
Sbjct: 6 REVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEM 69
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A3F2RQU3_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQU3_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.780e-10 Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 88 LVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
LV PP R S ++ +N +L+ +F+RPL +A + GV TT++K++CR+ GIS WPYR+IC + K+++
Sbjct: 15 LVMPPTRPISN----------ATRNINFGMLQPHFERPLQQAADSFGVCTTLLKKICRRNGISNWPYRKICGLRKSIA 82
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A421GA03_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GA03_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.420e-9 Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1 Query: 178 LETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAKNPQNLRKLKVKMRWLEDQMQHLFADPTPLGNF 447
L +F +P+ E R LG+ TT +K++CR++GI RWP+RQI S+ + + ++ A PQ K + ++ L+++ + + A+P G
Sbjct: 95 LRAHFGKPIVEVARELGICTTFLKKICRRLGIKRWPHRQIRSLARTIQMLEQVEAVATTPQEKNKYETQIAQLKEKQRAVMANPDANGKL 184
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: K8YW24_NANGC (Rwp-rk domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW24_NANGC) HSP 1 Score: 65.5 bits (158), Expect = 2.190e-9 Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 157 KRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAK--------NPQNLRKLKVKMRWLEDQMQHLFADPTPLGN 444
K V+ L YFDRP+++A RALG+ +T++K++CR+ I RWPYRQ+ S+++ + + + A+ +P+ +L ++R LE + L T LG+
Sbjct: 325 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGS 428
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A0Q3PUU3_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3PUU3_BRADI) HSP 1 Score: 65.5 bits (158), Expect = 2.250e-9 Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 109 SQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRR 333
SQ E++ G R K V L+ YF L +A R+LGV T +KR+CR+ GISRWP+R+I VN+A+SK RR
Sbjct: 496 SQPEKKKTG---RKAGKPVGLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKVNRALSKIRR 567 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10023.1.1 >prot_D-mesarthrocarpus_Contig10023.1.1 ID=prot_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp MTPRPRRLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGback to top mRNA from alignment at D-mesarthrocarpus_Contig10023:68..1414- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1347bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10023:68..1414- >mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)back to top |