mRNA_D-dichotoma_M_contig1112.967.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 186 bits (473), Expect = 3.810e-47 Identity = 114/261 (43.68%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 724 NAVLLAGEQGLPPECADPLREIVLGLSLGAFRRALV-GDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVPNGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYS 1503
+AV A GL LR I+ AFRR L GDP A V+ + V KPG V+ARPRVY+ KTAWL G+V QA ++S AM P R+V+D+RA N+ V + +P E A L A +LD++Q Y Q PL P+A+E+FT+ + GGLYTP RVPQG+LNAT+YFQA +T L G+ C VWVDDV+ D LLD ++++L+ L GL AA K FF I WCG++YS
Sbjct: 712 SAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWLAG-------LGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGL---NCFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYS 961
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 185 bits (470), Expect = 9.240e-47 Identity = 108/263 (41.06%), Postives = 147/263 (55.89%), Query Frame = 1
Query: 727 AVLLAGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVPNGS----SCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYS 1503
AV A + GL P D LR++V FRR + GDP A V M V+ K G V+AR R Y+ KT WL L G+V QA ++S M+ P S + R V D+RAVNR + +S P+P LE L A +LDM+QGY PL P+A+E+FTM+ GGLY+P RVPQGVLNAT+Y+Q M L + C+VWVDD++ LL+ ++++L GL AA K F+ ++WCG++YS
Sbjct: 605 AVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDL---NCIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYS 863
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 162 bits (410), Expect = 5.570e-39 Identity = 98/226 (43.36%), Postives = 129/226 (57.08%), Query Frame = 1
Query: 847 RVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVPNGSSC------RIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSG 1506
+V+ + + KPG V+ + RVYS AK WL L GMVV+T QA ++S AM VP R+ DY N + + +P E +ML GA LD++QGY Q PL ARE+F++ + GL+ PTRVPQ VLNAT YFQAVMT+ LQG+ C VWVDD I D LL+ ++ +L L G+ AAA K FF +IRWCG++YSG
Sbjct: 393 KVEPLKMTLKPGVQHVQEKARVYSPAKATWLSGCMAALVAMGMVVKTIQAVWASPAMTVPKPGRVGREGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGL---NCAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSG 615
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 143 bits (361), Expect = 6.610e-33 Identity = 96/258 (37.21%), Postives = 135/258 (52.33%), Query Frame = 1
Query: 724 NAVLLAGEQGLPPECADPLREIVLGLSLGAFRRAL-VGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVPNGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGR 1494
+AV A GL LR I+ AFR + GDP A V+ + V KPG V+ARPR Y+ KTAWL G+V QA +S AM P R+++D+RA N V + +P E A +LD+++ Y Q PL P+A+++FT+ + GL+TP RVPQG+LNAT+YFQA ++ L+G+ CLVWVD V+ + LL+ ++M++E L GL A F R GR
Sbjct: 486 SAVSSAVVAGLDEPHVGRLRSIIRE-RWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGL---NCLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGLTWPPTNARFLRPASHGAGR 739
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6A4B2T5_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B2T5_9STRA) HSP 1 Score: 135 bits (341), Expect = 9.700e-32 Identity = 84/258 (32.56%), Postives = 133/258 (51.55%), Query Frame = 1
Query: 739 AGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVV-PNGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSGE 1509
A ++G P E LR I + +R L DP ARV M +R KPG R +PR Y +L++ +L G V +++ ++ A+ V G R ADY+ VN + +P L+ + GA D I+GY Q L + +E + ++ +YTP RVPQG +A +FQ+ + L+ ++ + LVW+DD+++ A DA T L ++E + E L G +A K+ F RE+RWCG++ SG+
Sbjct: 38 AVQKGFPKESVPRLRRIATRYDI--WRLRLGDDPPARVPPMKIRLKPGAKPYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGEFRQTADYKPVNGDMEAIVGVMPNLQTDLECVKGACFFGLFDFIKGYWQLALAEECQEWLSYMTHRKVYTPRRVPQGCTDAALFFQSTIQKCLEELLNKHLLVWIDDLLLFASDASTYLSKLERLFELLDFFGFKLSAKKSSLFEREVRWCGKLISGD 293
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A6A3GK08_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GK08_9STRA) HSP 1 Score: 135 bits (339), Expect = 3.810e-31 Identity = 83/258 (32.17%), Postives = 133/258 (51.55%), Query Frame = 1
Query: 739 AGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVV-PNGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSGE 1509
A ++G P E LR I + +R L DP ARV M +R KPG R +PR Y +L++ +L G V +++ ++ A+ V G R ADY+ VN + +P ++ + GA D I+GY Q L + +E + ++ +YTP RVPQG +A +FQ+ + L+ ++ + LVW+DD+++ A DA T L ++E + E L G +A K+ F RE+RWCG++ SG+
Sbjct: 38 AVQKGFPKESVPRLRRIATRYDI--WRLRLGDDPPARVPPMKIRLKPGAKPYRCKPRKYPPEVRRFLDDFNAELVRLGWVYENTESRWACPALPVRKTGGEFRQTADYKPVNGDMEAIVGVMPNIQTDLECVKGACFFGLFDFIKGYWQLALAEECQEWLSYMTHRKVYTPRRVPQGCTDAALFFQSTIQKCLEELLNKHLLVWIDDLLLFASDASTYLSKLERLFELLDFFGFKLSAKKSSLFEREVRWCGKLISGD 293
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A2P4YDS0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDS0_9STRA) HSP 1 Score: 139 bits (349), Expect = 4.020e-31 Identity = 83/262 (31.68%), Postives = 140/262 (53.44%), Query Frame = 1
Query: 730 VLLAGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVP---NGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSG 1506
V+ A ++G + LRE++ +R L DP A+V + + + R R YS A+ ++L + +L G V R ++ ++ A+ V + S RI DYR VN+L V A +P L+ V + G+ D+++G+ Q PLHPD++EL + ++ ++TP RVPQG ++++ +FQ + D + ++GR CL+W+DD+II A A + + E + GL K+V F +E+ WCGR+ SG
Sbjct: 466 VINAVKEGFDHAEMESLRELLKEFR-DTWRDKLGPDPPAKVAPLKITLREDAVPYRCHARKYSPAQRSFLRAYTQELVDFGFVRRNDKSRWACAAVPVRKVGSADSFRITNDYRPVNKLTVPIAGVMPNLDVVLDQVSGSYGFAKFDLMKGFWQMPLHPDSQELMSFMTEDSVFTPLRVPQGAMDSSVHFQNQLQDVFRELLGRHCLIWIDDIIIYAASATEFIVVLRRFFELVQEHGLKLNVNKSVIFCKEVAWCGRLVSG 726
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: H3GLY9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLY9_PHYRM) HSP 1 Score: 138 bits (347), Expect = 6.210e-31 Identity = 95/265 (35.85%), Postives = 135/265 (50.94%), Query Frame = 1
Query: 736 LAGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVV-PNGSSC------RIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSGE 1509
+A E GL + LR I L FR P RV M VR + G VR++ R YS A+L+ H L G++ + ++ ++S +V G + R+ D R+VN P+P E V L GA LD +GY Q PLHPD++EL++ V+ G+YTPTRVP G +A AY Q ++ + ++G L W+DD++ A D LLD ++ VLE GL A K FF REI+W GR+ SG+
Sbjct: 621 VAEELGLTLDGTAKLRGI-LHARADNFRVEFGHAPPVRVAPMKVRLREGAAPVRSQLRRYSPNDRAFLDRHTASLLKYGLIYKNHRSRWASAPRIVRKKGQNVDPTADPRMTIDTRSVNERTEPMPWPMPVQEVVLGELEGAKVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGIVEEIFGDLLGVSVLAWLDDILGFAEDDDALLDVLDTVLERCEKFGLKLHAKKCQFFSREIKWSGRMISGD 884
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: H3H7W2_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7W2_PHYRM) HSP 1 Score: 136 bits (342), Expect = 2.530e-30 Identity = 95/265 (35.85%), Postives = 134/265 (50.57%), Query Frame = 1
Query: 736 LAGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVPNG-------SSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSGE 1509
+A E GL + LR I L + FR DP RV M VR + G VR++ R YS A+L+ H L G+ + ++ ++S +V + R+ D R+VN P+P E V L GA LD +GY Q PLHPD++EL++ V+ G+YTPTRVP G +A AY Q V+ + ++G L + D++ A D LLD ++ VLE GL A K FF REI+WCGR+ SG+
Sbjct: 51 VAEELGLTLDGTAKLRGI-LHVRADNFRVEFGHDPSVRVAPMKVRLREGAAPVRSQLRRYSPNDRAFLDRHTASLLKYGLNYKNHRSRWASAPRIVRKKEQDVDPTADPRMTIDTRSVNERTEPMPWPMPVQEVVLGELEGAKVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQCVVEEIFGDLLGVSVLALLADILGFAEDDDALLDVLDTVLERCEKFGLKLHAKKCQFFSREIKWCGRMISGD 314
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Match: A0A2P4XQ32_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ32_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.600e-28 Identity = 79/262 (30.15%), Postives = 135/262 (51.53%), Query Frame = 1
Query: 730 VLLAGEQGLPPECADPLREIVLGLSLGAFRRALVGDPLARVDLMVVRRKPGPDSVRARPRVYSQAKTAWLEEHFGQLETTGMVVRTSQATFSSVAMVVP---NGSSCRIVADYRAVNRLVVQSALPLPRLEEVGAMLGGAVALCTLDMIQGY*QTPLHPDARELFTMVSAGGLYTPTRVPQGVLNATAYFQAVMTDKLQGMIGRRCLVWVDDVII*ARDAGTLLDRIEMVLEWLLLRGLLAAALKAVFFRREIRWCGRIYSG 1506
V+ A ++G + LRE++ +R L DP A+V + + + R R YS A+ ++L + +L G V R ++ ++ + V + S RI DYR VN+L V A +P L+ + G+ D+++G+ Q PLHPD++EL + + ++ P RVPQG ++++ +FQ + D + ++GR CL+W+DD+II A A + + E + GL K+V F +E+ WCG + SG
Sbjct: 268 VINAVKEGFDHAEMESLRELLKEFR-DTWRDKLGPDPPAKVAPLKITLREDAVPYRCHARKYSPAQRSFLRAYTQELVDFGFVRRNDKSRWACAVVPVRKVGSADSFRITNDYRPVNKLTVPIAGVMPNLDVALDQVSGSHGFAKFDLMKGFWQMPLHPDSQELMSFMREDSVFKPLRVPQGAMDSSVHFQNQLQDVFRELLGRHCLIWIDDIIIYAASATEFIVVLRRFFELVQEHGLKLNVNKSVIFCKEVAWCGHLVSG 528 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1112.967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1112.967.1 >prot_D-dichotoma_M_contig1112.967.1 ID=prot_D-dichotoma_M_contig1112.967.1|Name=mRNA_D-dichotoma_M_contig1112.967.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=190bp MPSETLSRWRPPTRPRRRWSRTTCFHAHHAWLWSRTGSNAVLLAGEQGLPback to top mRNA from alignment at D-dichotoma_M_contig1112:212927..214461+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1112.967.1 ID=mRNA_D-dichotoma_M_contig1112.967.1|Name=mRNA_D-dichotoma_M_contig1112.967.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1535bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:212927..214461+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1112:212927..214461+ >mRNA_D-dichotoma_M_contig1112.967.1 ID=mRNA_D-dichotoma_M_contig1112.967.1|Name=mRNA_D-dichotoma_M_contig1112.967.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1140bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:212927..214461+ (Dictyota dichotoma ODC1387m male)back to top |