mRNA_D-dichotoma_M_contig950.20227.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig950.20227.1 vs. uniprot
Match: A0A6H5KLJ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLJ1_9PHAE) HSP 1 Score: 474 bits (1219), Expect = 4.660e-157 Identity = 250/417 (59.95%), Postives = 309/417 (74.10%), Query Frame = 3
Query: 375 LFASRKNRGSFSWDEDVLERRVKDMLVERAIDTAEYYWSETGGEIYRKWLGNFGKELEMGEDVVNKLGWARYLLKMMEAEPEESVIVRTVMKDSDEVIAAREK--NNARPPTLSPWRHTANQLSADWDEDEMEEMKMALDYPPQFQTVKKEVVVQPVDVAKRVMAIREQLAVEWTEDLANIEGENEEIKRLEKEMRQRV-----GEDAAE------SERRLTYDHGEAFGGDSTPFRADSYETLVSYLTEIGALAVQEKMRIDGDEMGWQWMEQFLYWTKANSKSGLA--GSESAANPPRSPSASRKSGRGVGGEGAGARGKEVSAMFGQAGGGMHETEDEKKIRGNRLLEEMMAGPKMQMVDTKTGEMIGVDPPKICGLVMAARLGVAERIKSALRSVPADHGLVLRRYLEGKWKA 1580
+ S R S+SWDEDVL+R VKDMLV+RA++T + W+ETGG+IY +WL F +G+DV++ +GWAR+L+KMM EP E+V++RT KDS +VI A+ K NNARPPTLSPWRH+ NQLSADWD +E EEMK+ALDYPPQ + VK+ VVVQP ++AK++M IREQLA+EW EDL NIE EN+EI RL+ + R+R G D E S RRLTYDHG+AFGGDS+P R+D+YETLV YLTEI AL VQE+MR+DGD+MGW WMEQFLYW KANSK G A G ES +PP PS G G GE GARGK V A FG AG GM T++++K RGNR+LEEM+ G K+Q D K +++GVDP +I LVM AR+ VA RI +AL +VPADHGLVLRRYLE KW+A
Sbjct: 58 MSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARNNARPPTLSPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENDEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEIAALVVQERMRVDGDDMGWNWMEQFLYWAKANSKYGSAAPGDESLESPPPFPS--DNGGDGGIGEERGARGKRVKAAFGAAGVGMGGTDEDRKTRGNRMLEEMLMGQKVQTFDFKKNDLVGVDPAEIGQLVMDARIEVARRISTALETVPADHGLVLRRYLEDKWEA 472
BLAST of mRNA_D-dichotoma_M_contig950.20227.1 vs. uniprot
Match: A0A835YQU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 9.710e-18 Identity = 110/434 (25.35%), Postives = 169/434 (38.94%), Query Frame = 3
Query: 426 LERRVKDMLVERAIDTAEYYWSETGGEIYRKWLGNFGKELEMGEDVVNKLGWARYLLKMMEAEPEESVIVRTVMKDSDEVIAAREKNNA-RPPTLSPWRHTANQLSADWDEDEMEEMKMALDYPPQFQTVKKEVVVQPVDVAKRVMAIREQLAVEWTEDLANIEGENEEIKRLEKEMRQRVGEDA--AESERRLTYDH------GEAFG---------GDSTPFRADSYET--------------------------LVSYLTEIGALAVQEKMRIDGDEMGWQWMEQFLYWTKANSKSGLAGSESAANPPRSPSASRKSGRGVGGEGAGARGKEVSAMFGQAGGGMHETEDEKKIRGNRLLEEMMAGPKMQMVDTK----TGEMIGVDPPKICGLVMAARLGVAERIKSALRSVPADHGLVLRRYLEGKWKAS 1583
+ER VK++L +A + +YYW E E+ +WL KE E V ++GW +L +M EPEE TV K +A R K + P LS RH A++Y V+++P +AKR+M +REQLA EW +DL +E EN E+ R + + DA A+S R+L +DH GE G P+R +Y L++ +T + + ++R G W+E+F+ K G+G ++GN LLE M+ GP M M++ K + + ++P +I VM R AE I++ L +VP DH + LE +W A+
Sbjct: 61 MERSVKNLLAVQASASVQYYWMEFRDELQPRWL----KEFEEAGHNVGQVGWDHFLGSLMRTEPEEV----TVRK-----MAQRPKGGSGNNPFLSDTRH-------------------AMEYT---------VLIEPFQIAKRIMTVREQLAQEWIKDLELVETENAELLRHHVDT---LSMDAKQADSSRQLVFDHDPCAVEGEVLXXXXXXXXXYGTKLPYRGKNYRADSSRXXXXXXXXXXXXXXXXXXXXXELLAMVTRVAVRRYEAELRQSGHRYHQNWLERFML---------------------------KGGKG--------------------------------LKGNALLESMLNGP-MMMINPKVRGNSDKPRVIEPAQIAKGVMLRRATAAEEIRTILGTVPGDHLRLKASMLEQQWSAT 390
BLAST of mRNA_D-dichotoma_M_contig950.20227.1 vs. uniprot
Match: A0A835Z7Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.510e-9 Identity = 64/258 (24.81%), Postives = 112/258 (43.41%), Query Frame = 3
Query: 429 ERRVKDMLVERAIDTAEYYWSETGGEIYRKWLGNFGKELEMGEDVVNKLGWARYLLKMMEAEPEESVIVRTVMKDSDEVIAAREKNNARPPTLSPWRHTANQLSADWDEDEMEEMKMALDYPPQFQTVKKEVVVQPVDVAKRVMAIREQLAVEWTEDLANIEGENEEIKRL------------EKEMRQRVGEDAAESERRLTYD---HGEAFGGDSTPFRADSYETLVSYLTEIGALAVQEKMRIDGDEMGWQWMEQ 1157
ERR+K++L E+++ TA YYW E G +Y +++ F + G VV + GW +L ++ + PEE +I + V K R + P Y + V V++P+ + +R++ IR QLA E DL IE ENE + E+R + E A R T+ +A TP+R+ Y +++ +T++ ++++RI GD+ W+++
Sbjct: 9 ERRLKNVLTEKSLQTAMYYWLELRGNMYSEYMARFTEGEGGGGSVVAR-GWRTFLSNLLSSPPEEVIIEKVVKKP-------RGGSGTNP------------------------------YLAARKVVSYTEVIEPMTLGRRILDIRAQLAAELFHDLELIESENERXXXXXXXXXXXVQQFYQDELRYGIKE--ATRLRLRTWQPVVDTDAINSTDTPYRSSLYLAVLALVTKVSLERYKKELRIVGDKHTLAWLDK 226
BLAST of mRNA_D-dichotoma_M_contig950.20227.1 vs. uniprot
Match: A0A7S0ZIK8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIK8_9RHOD) HSP 1 Score: 63.2 bits (152), Expect = 8.380e-7 Identity = 62/242 (25.62%), Postives = 102/242 (42.15%), Query Frame = 3
Query: 444 DMLVERAIDTAEYYWSETGGEIYRKWLGNFG--KELEMGEDVVNKLGWARYLLKMMEAEPEESVIVRTVMKDSDEVIAAREKNNARPPTLSPWRHTANQLSADWDEDEMEEMKMALDYPPQFQTVKKEVVVQPVDVAKRVMAIREQLAVEWTEDLANIEGENEEIKRLEKEMRQRVGEDAAESERRLTYDHGEAFGGDSTPFRADSYETLVSYLTEIGALAVQEKMRIDGDEMGWQWMEQFL 1163
D L R+++T YY+ E + WL F KE E+G ++ +LLKMM + PE+ V M + +P + + ++P +A+R++AIREQL+VEW +DL I EN E++RL E+ + + +S R+ D + F D++ R+ +Y L LT + AV + + D + W+E FL
Sbjct: 92 DFLTRRSVNTLIYYFDEFHDGPSKNWLEKFENFKEREIGFTQSDE-----FLLKMMSSRPEKGV-------------------------------------------------MTVSHPKGYFKRQFPFTIEPRRIAERILAIREQLSVEWKKDLRLISSENNELQRLHLELALQPNI-SLDSIRKKILD-SDPFANDTSALRSSNYRKLKVLLTHHASYAVLQDLH-KSDNHSYMWLESFL 276 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig950.20227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig950.20227.1 >prot_D-dichotoma_M_contig950.20227.1 ID=prot_D-dichotoma_M_contig950.20227.1|Name=mRNA_D-dichotoma_M_contig950.20227.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=518bp MLQHILAHAPCVLLANLLIGYSTKVTLGFVPSSVAHYGETYVQSRQYSAAback to top mRNA from alignment at D-dichotoma_M_contig950:78990..152116- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig950.20227.1 ID=mRNA_D-dichotoma_M_contig950.20227.1|Name=mRNA_D-dichotoma_M_contig950.20227.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=73127bp|location=Sequence derived from alignment at D-dichotoma_M_contig950:78990..152116- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig950:78990..152116- >mRNA_D-dichotoma_M_contig950.20227.1 ID=mRNA_D-dichotoma_M_contig950.20227.1|Name=mRNA_D-dichotoma_M_contig950.20227.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3108bp|location=Sequence derived from alignment at D-dichotoma_M_contig950:78990..152116- (Dictyota dichotoma ODC1387m male)back to top |