mRNA_D-dichotoma_M_contig1100.887.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1100.887.1
Unique NamemRNA_D-dichotoma_M_contig1100.887.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.730e-18
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = 3 
Query: 2121 TRPQQGMFNAIAFFKSTVAQVLHGSYPQRCMVWVGEVIIWGNTQAEMVESLGQVLKKLQ-RGLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLRLVEVKAPLQTLMDDRLAGT-RRTKNV 2573
            TR  Q + NA  +F++ + ++L G     C VWV + I WG  + +++ +L ++L +LQ  G+  AAHK  FF   ++W  +++SG  V +D E +Q +  MR  ET G LMQ L A  W+R  L RL EV  P++TL++  +A   R+TK++
Sbjct:  533 TRVPQDVLNATGYFQAVMTEILQGL---NCAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSI 682
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A225UZ40_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UZ40_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.550e-14
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3 
Query: 2121 TRPQQGMFNAIAFFKSTVAQVLHGSYPQRCMVWVGEVIIWGNTQAEMVESLGQVLKKLQR-GLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLRLVEVKAPLQTLMDDRLAGTRRTKNVPRG 2582
            TR  QG  +A   F+STV  VL     +  +VW+ +++I+ +TQ E+V+++  VL KL   G      K   F   ++W  RI +  G+ +D E ++ +  M    T   L Q L A+NWMR  L+    V  PLQ  +D  L GTR+TK    G
Sbjct:   51 TRVPQGSTDAALPFQSTVEMVLGDLVNRNVIVWIDDLLIFADTQEELVDAIDAVLTKLDEFGFVVNPKKSSLFLSEVRWCGRIINKHGIGHDPERIRALREMAIPTTAAELQQFLCASNWMRNGLVDYARVARPLQERLDVALTGTRKTKRAAAG 205
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.700e-13
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 3 
Query: 2121 TRPQQGMFNAIAFFKSTVAQVLHGSYPQRCMVWVGEVIIWGNTQAEMVESLGQVLKKLQR-GLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLRLVEVKAPLQTLMDDRLAGTRRTKNVPRG 2582
            TR  QG  +A   F+STV  VL     +  +VW+ +++++  TQ+E+++++  VL+KL   G      K   F   ++W  RI +  G+  D E +Q +  +    T   L Q L A+NWMR  L+    V  PLQ  +D  L GT+RTK    G
Sbjct:  315 TRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEIQWCGRIINKNGIGYDPERIQALRNIPPPMTAAELQQLLCASNWMRSGLVDYARVVRPLQERLDQALTGTKRTKRAAAG 469
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A2P4YLW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.110e-11
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 3 
Query: 2121 TRPQQGMFNAIAFFKSTVAQVLHGSYPQRCM-VWVGEVIIWGNTQAEMVESLGQVLKKLQR-GLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLRLVEVKAPLQTLMDDRLAGTRRTKNVPRG 2582
            TR  QG  +A   F+S V  VL G    +C+ VW+ +++++  TQ+E+++ +  VL+K    G      K   F   ++W  RI +  G+  D E ++ +  +    T   L Q L A+NWMR  L+    V  PLQ  +D  L GT+RTK    G
Sbjct:  118 TRVPQGSTDAALHFQSMVQMVL-GELVGKCVIVWIDDLLVFAETQSELLDVIDAVLQKFDEYGFILNPKKCSLFQTEIQWCGRIINKNGIGYDPERIEALRNIPPPMTAAELQQLLCASNWMRSGLVDYARVVRPLQERLDQALTGTKRTKRAAAG 272
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A225UHX1_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UHX1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.530e-6
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 3 
Query: 2211 MVWVGEVIIWGNTQAEMVESLGQVLKKLQR-GLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLRLVEVKAPLQTLMDDRLAGTRRTKNVPRG 2582
            +VW+ +++I+ +TQ E+V+++  VL KL   G      K   F   + WY RI + +G+ +D E ++ +  M    T   L Q L A+NWMR  L   V+      T     L GTR+TK    G
Sbjct:    6 IVWIDDLLIFADTQEELVDAIDAVLTKLDEFGFIVNPKKSSLFLSEVWWYGRIINKQGIGHDPERIRALRWMAIPTTAAELQQFLCASNWMRNEL---VDSCRSSITRAAGPLTGTRKTKRAAAG 127
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BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Match: A0A2P4Y427_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y427_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.220e-5
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 3 
Query: 2121 TRPQQGMFNAIAFFKSTVAQVLHGSYPQRCM-VWVGEVIIWGNTQAEMVESLGQVLKKL-QRGLHPAAHKREFFAPAMKWYERIFSGKGVTNDLECVQVMMAMRHLETVGAL 2450
            TR  QG  +A   F+STV  VL G    +C+ VW+ +++++ NTQ E+V ++  VL KL + GL     K   F   ++W  RI +  GV +D E +Q +  M    T   L
Sbjct:  484 TRVPQGSTDAALHFQSTVEMVL-GDLVNKCVIVWIDDLLVFANTQEELVGAIDVVLTKLDEHGLILNPKKSTVFLKEVRWCGRIINQHGVGHDPERIQALREMPSPTTAAEL 594
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1100.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L028_9PHAE2.730e-1837.25CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A225UZ40_9STRA8.550e-1434.84Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4YJ51_9STRA4.700e-1333.55Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4YLW7_9STRA3.110e-1132.69Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A225UHX1_9STRA1.530e-632.80Reverse transcriptase domain-containing protein (F... [more]
A0A2P4Y427_9STRA3.220e-534.82Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1100contigD-dichotoma_M_contig1100:33924..37013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog164328.Phyra85982
EggNOG free text desc.transposition
EggNOG OGs2RRYP@2759,3QHSD@4776,COG2801@1
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size2960
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1100.887.1prot_D-dichotoma_M_contig1100.887.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1100 34420..34965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.8906648-UTR-D-dichotoma_M_contig1100:33923..342681622927612.8906648-UTR-D-dichotoma_M_contig1100:33923..34268Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 33924..34268 -
1690798061.6224806-UTR-D-dichotoma_M_contig1100:33923..342681690798061.6224806-UTR-D-dichotoma_M_contig1100:33923..34268Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 33924..34268 -
1622927612.9032478-UTR-D-dichotoma_M_contig1100:34398..344191622927612.9032478-UTR-D-dichotoma_M_contig1100:34398..34419Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 34399..34419 -
1690798061.6323829-UTR-D-dichotoma_M_contig1100:34398..344191690798061.6323829-UTR-D-dichotoma_M_contig1100:34398..34419Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 34399..34419 -
1622927612.9328876-UTR-D-dichotoma_M_contig1100:34965..370131622927612.9328876-UTR-D-dichotoma_M_contig1100:34965..37013Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 34966..37013 -
1690798061.650991-UTR-D-dichotoma_M_contig1100:34965..370131690798061.650991-UTR-D-dichotoma_M_contig1100:34965..37013Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 34966..37013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.918042-CDS-D-dichotoma_M_contig1100:34419..349651622927612.918042-CDS-D-dichotoma_M_contig1100:34419..34965Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 34420..34965 -
1690798061.6408477-CDS-D-dichotoma_M_contig1100:34419..349651690798061.6408477-CDS-D-dichotoma_M_contig1100:34419..34965Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 34420..34965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1100.887.1

>prot_D-dichotoma_M_contig1100.887.1 ID=prot_D-dichotoma_M_contig1100.887.1|Name=mRNA_D-dichotoma_M_contig1100.887.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=182bp
METGRCRWLKIPRISLRLFYLPNSTRPQQGMFNAIAFFKSTVAQVLHGSY
PQRCMVWVGEVIIWGNTQAEMVESLGQVLKKLQRGLHPAAHKREFFAPAM
KWYERIFSGKGVTNDLECVQVMMAMRHLETVGALMQCLLAANWMRPHLLR
LVEVKAPLQTLMDDRLAGTRRTKNVPRGDCR*
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mRNA from alignment at D-dichotoma_M_contig1100:33924..37013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1100.887.1 ID=mRNA_D-dichotoma_M_contig1100.887.1|Name=mRNA_D-dichotoma_M_contig1100.887.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3090bp|location=Sequence derived from alignment at D-dichotoma_M_contig1100:33924..37013- (Dictyota dichotoma ODC1387m male)
TTCTCCGCGTCGTTACCGTTAGATCAGACTTGGAGAATCATTCGAAAATT
AAACATTGGTGAACACATGTCGAAATCTGTGATGAAAGATACGACTGAGT
GCCTACAATGAGGACCCGTTGTTTCGTCCCACTCACTCAAGAGTACATCT
ATAGTGCCCTTCCGCTTGATTGCCCACCCCCCGGTGTTGCTCCCTTGACC
TCTCTAGAATGGTTTGAATCGGCAAATAGTCATTTCCGCCGCATCCGTGG
GAACACGGGAATGATTGAATTTCTGCATTCCCCTTGAAACCCTTCCCCTT
TCTCAGACACTTATTTAGTGCAATGCAACCCCTCCTATACTGCACTGATC
CGGGGAAAGGATTGCTGTGTCTGTAGCGGCGGTATCGGACCGTTGAGCGT
TATCGTATATCGCATGAAGTACGGCATGCGCAATATTCAGATCTGCAGTT
TATTGTTTGTTACACAAGTGGATGATATGTCCACCTCTCGTCGAGAAACT
ATCCACTCGTCCCCTCCACAGGGATTAAATCGTGGGGTGTCGGGACCAAT
ACTGGTGCTTCTGTCTCTTGTTTACAAAATCGAGTATGATCAATGATCCC
ACATTCTAAGTGCACGACAACGACCCGTTGGTCCCGCGACGTGCTTACTG
TCATTCCTCATTCTCGCCGCATACGTGAGTTTTGCTTCAAAGGTAAAAGC
AACGAAGATCGTTCTTGCGATGGATAGTGTAGTACCTTACGGATAGTACC
TTGTGGCACTCTCAAAGGCTCACCCTCGTTGTTTTCAGCTGACTGTATAG
TATATTATTGAGTTTCCCCAACGTTGGTCGCACGAGGGAGTGACTCTCCG
TGGGTGCTTCCCCTGTACATGGTCCCAAAACAATAAACAAGTCAGGCATG
AAGTTCCCCTTCGAGAATCCCTTCCGAGAAGCCATTCCTAGAGCCCAAAT
ATCATCCAACATCCTAATCCTTCTTTCCCGAGAAATTAGAACATCTGCAG
CACCGTGCGTTCCACCATTGAACCTCAAAATTGCCACACCTAGTTTCATA
ACAGATTTCCGTCAACCTCAAAAGTCTCTATCCGTCTCTACGTCTCCAGT
CTGGCGCGCCATGAAATGCTAGGTTTCGGCATGATGATAAAGTCGAGAAT
CGGGATCTCGCATTGACAGGAGCTCTGGGCGTCGCGCGAGACATTCCTCG
GGAAGAAGGAAACACAGGAGTTGCCTTGAACTTAGGATTTCGGATGCCTT
CTCACGGTTTCAGGATGTAAGGTGCGTTGCGTTCGCTTCGACGGCTCACA
TCTTCAGCCAGGGCACGCGCTCCATAAAAAACGAGTGACGATTTTGTGCA
CTATCATTAGTACCTAAACGGTGTAAGGATACATGCCGTGCTGATAAATG
GGGTCATGAAATCCTTTCGCATGCCCGACGACAACGTTCACTGGGGTCGG
CGACTGCATGTCCTGAAGATTTCGTACAACGTGCTAAACAAATTTTCGTC
ACACGTGCCCGGTGAGATGCAAGAAACGAAGCATTAATGTCACAGGGTTC
CATCATGTTTATTTACCCGGTCGAGAAGCACAAAGCTAGAATCGAAGCTC
CGCAGAAAGCTCTAGAAGCAGCGAGGACAGCAGATATGGACCCAGGGGCG
GCAAAGAGACTGAATCAAAAAGCCCGAGTGGACACTTTCAGGCGAGTGTC
GACTGACGAGCCAGCAGCGGATGTGGAGTCATTGCGGATCCAGTTAAATC
CGGATGCTTCCATGGAGGGTGTGGGGGAGAGACCTCATCAGGCCGCGCTT
GAGGAGATGGAATGGCTCGAGAACCAGATGCAGCAACTCCCGGGCGCCGG
CATGGTTCGGCTTCACAGGCATGTAACGTGTGCGAGTTTTGGGATGGCAA
TTCCTAAGGGGCAAGGATTCCATATGGTGGCGGACTATCGGGCGGCGAAA
GCCCAGGTGGAGTTAGTGCCGTAGCCAAAGCCAGATCTAGAGGTAATGAG
CGTCCGATTTAGGGGTCTACCCGCATATCTATTTCGTAGACGTGCTTCAT
GGAAACTGGAAGATGCCGCTGGCTGAAGATACCCAGGATTAGTTTACGGT
TATTTTACCTTCCGAACTCTACACGCCCACAACAGGGGATGTTCAATGCT
ATTGCGTTCTTTAAGTCGACAGTGGCTCAGGTTTTACATGGAAGTTATCC
ACAAAGGTGCATGGTATGGGTAGGCGAAGTCATTATTTGGGGGAATACAC
AGGCTGAAATGGTTGAGAGCCTTGGGCAGGTTTTGAAGAAGTTACAGCGT
GGTCTGCACCCTGCCGCTCACAAACGCGAGTTCTTTGCACCGGCTATGAA
GTGGTATGAACGGATTTTTTCTGGCAAAGGAGTAACGAATGACCTGGAGT
GTGTGCAAGTAATGATGGCGATGAGGCATCTGGAGACGGTGGGAGCGTTG
ATGCAGTGTCTGCTGGCGGCCAACTGGATGAGGCCCCACCTGCTGCGTCT
TGTGGAAGTGAAGGCGCCGCTGCAAACGCTAATGGACGACCGGCTAGCTG
GCACGCGAAGAACCAAGAACGTGCCAAGAGGAGACTGTCGGTGACGAAAA
TGGGTACCGGAAAAGGTTCGATCCTGGGAGGCGGTACGCCGCCTGCTGAA
GGAGTTGGCAAAATCGTGTTGTCCGAAGCCCGGGTGGTCGAGTGCTCATG
TTTCCTGACGCCAATGATCTTTTTCGGGATTGTTATCTAACGCAGGTCAG
CGATGAGCTGCATTCCCGTGGGGATCCGTTGAGCGGATGCGGCGGGAGCG
CTGGCGAACGGCGTACAAGGAGCGTATCCGGGCGTAGCCCACCGCCAAGC
CAATCTTGGTGTCTGTTGGGCAGGTTGATTCGAATGGACAAGGACCAGCA
GAGCTTTAGCGAGCGTTATAGTGCAACTGTGCCTGATCTCGCATTCGTGC
ATTTAGGTCCAATAGGATTATACATTGTGAAGGCCGTCACTCGGCGGAAC
AGGACATCACAGTAGAAAGAATATTGCGGAGGAATACACTAGATGTAGGC
TATCAGCTGGGTCGGCCTGAGAATTAATTAAACATCTCCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1100:33924..37013-

>mRNA_D-dichotoma_M_contig1100.887.1 ID=mRNA_D-dichotoma_M_contig1100.887.1|Name=mRNA_D-dichotoma_M_contig1100.887.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1092bp|location=Sequence derived from alignment at D-dichotoma_M_contig1100:33924..37013- (Dictyota dichotoma ODC1387m male)
ATGGAAACTGGAAGATGCCGCTGGCTGAAGATACCCAGGATTAGTTTACG
GTTATTTTACCTTCCGAACTCTACACGCCCACAACAGGGGATGTTCAATG
CTATTGCGTTCTTTAAGTCGACAGTGGCTCAGGTTTTACATGGAAGTTAT
CCACAAAGGTGCATGGTATGGGTAGGCGAAGTCATTATTTGGGGGAATAC
ACAGGCTGAAATGGTTGAGAGCCTTGGGCAGGTTTTGAAGAAGTTACAGC
GTGGTCTGCACCCTGCCGCTCACAAACGCGAGTTCTTTGCACCGGCTATG
AAGTGGTATGAACGGATTTTTTCTGGCAAAGGAGTAACGAATGACCTGGA
GTGTGTGCAAGTAATGATGGCGATGAGGCATCTGGAGACGGTGGGAGCGT
TGATGCAGTGTCTGCTGGCGGCCAACTGGATGAGGCCCCACCTGCTGCGT
CTTGTGGAAGTGAAGGCGCCGCTGCAAACGCTAATGGACGACCGGCTAGC
TGGCACGCGAAGAACCAAGAACGTGCCAAGAGGAGACTGTCGGTGAATGG
AAACTGGAAGATGCCGCTGGCTGAAGATACCCAGGATTAGTTTACGGTTA
TTTTACCTTCCGAACTCTACACGCCCACAACAGGGGATGTTCAATGCTAT
TGCGTTCTTTAAGTCGACAGTGGCTCAGGTTTTACATGGAAGTTATCCAC
AAAGGTGCATGGTATGGGTAGGCGAAGTCATTATTTGGGGGAATACACAG
GCTGAAATGGTTGAGAGCCTTGGGCAGGTTTTGAAGAAGTTACAGCGTGG
TCTGCACCCTGCCGCTCACAAACGCGAGTTCTTTGCACCGGCTATGAAGT
GGTATGAACGGATTTTTTCTGGCAAAGGAGTAACGAATGACCTGGAGTGT
GTGCAAGTAATGATGGCGATGAGGCATCTGGAGACGGTGGGAGCGTTGAT
GCAGTGTCTGCTGGCGGCCAACTGGATGAGGCCCCACCTGCTGCGTCTTG
TGGAAGTGAAGGCGCCGCTGCAAACGCTAATGGACGACCGGCTAGCTGGC
ACGCGAAGAACCAAGAACGTGCCAAGAGGAGACTGTCGGTGA
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