mRNA_D-herbacea_M_contig94.15944.1 (mRNA) Desmarestia herbacea DmunM male
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Overview
Homology
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: D7FKX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX2_ECTSI) HSP 1 Score: 232 bits (592), Expect = 2.280e-72 Identity = 146/233 (62.66%), Postives = 163/233 (69.96%), Query Frame = 3
Query: 144 MVLRSLSRAGVEIGVKVVGKGRSVAAISH--KLAGREARHSSSWVGQGQLGRSHASSYRQGGLGAGTQLFKLVETDLMSKELTRYGPSDAEQLGLHSVQDVLADIAAATS-----ALPEAVVAVTNETPEDTEAAPNSAAAPAVPEEDVLAAWGLGPRVSDSAEEE---VEVVSKGGEASLEEGLEKMAIKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
M LRSLSRAGVE+G +VVG G + H + G R SS VGQG R A S+RQG LGAGTQLFKLVETDLMSKELTRYGP+DAE LGLHS+QDVL+DIAAAT A P + A AAAPAV EE+VLAAWGLGP V+D +E E V + GE E EK+AIKRTYQPST+KRKRKHGFLYRAKTRLGKKIL+RRQ+KGRWRLGI
Sbjct: 1 MALRSLSRAGVEMGARVVGTGSKCCRVPHATRHVGGAERKMSSVVGQGPGHR--APSFRQGSLGAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIQDVLSDIAAATLTPHKLAAPAVTAVAPSAEVASVPATEEPAAAPAVREEEVLAAWGLGPVVTDGSEVEGIQAPPVGEVGEEGGEVSNEKVAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: RL34_THEAB (50S ribosomal protein L34 n=7 Tax=Thermotogales TaxID=2419 RepID=RL34_THEAB) HSP 1 Score: 60.8 bits (146), Expect = 7.980e-9 Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS IKRKR HGFL R KT G+K+L+ R+ KGRWRL +
Sbjct: 1 MKRTYQPSRIKRKRTHGFLARKKTAGGRKVLKNRRRKGRWRLAV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A2N7Q8D5_9BACT (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=A0A2N7Q8D5_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.100e-8 Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS IK KRKHGF R KTR G++IL+ R++KGRWRL +
Sbjct: 1 MKRTYQPSRIKMKRKHGFRARMKTRSGRRILKNRRKKGRWRLTV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A7S3NIP4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIP4_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.310e-8 Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query: 660 EGLEKMAIKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLG 809
E + K AIKRT+QPS I+RKRKHGFL R ++ G+KI+ RR+ KGRWR+
Sbjct: 109 EPITKQAIKRTFQPSIIRRKRKHGFLSRINSKKGRKIINRRKNKGRWRIS 158
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: F8C4M3_THEGP (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=F8C4M3_THEGP) HSP 1 Score: 58.9 bits (141), Expect = 3.920e-8 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS IK KR+HGF R KTR G++IL+ R+ KGRWRL +
Sbjct: 1 MKRTYQPSRIKMKRRHGFRARMKTRSGRRILRNRRRKGRWRLTV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: UPI001A97F9D2 (50S ribosomal protein L34 n=1 Tax=Thermosipho ferrireducens TaxID=2571116 RepID=UPI001A97F9D2) HSP 1 Score: 58.9 bits (141), Expect = 3.920e-8 Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS IKRKR HGFL R+++ G+KIL+ R+ KGRW+L +
Sbjct: 1 MKRTYQPSRIKRKRTHGFLARSRSASGRKILKNRRRKGRWKLSV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A2N7PKN3_9BACT (50S ribosomal protein L34 n=5 Tax=Thermodesulfobacteriaceae TaxID=188711 RepID=A0A2N7PKN3_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 5.500e-8 Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 3
Query: 684 KRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
KRTYQPS +K KRKHGF R KTR G++IL+ R+ KGRWRL +
Sbjct: 3 KRTYQPSRLKMKRKHGFRARMKTRSGRRILKNRRRKGRWRLTV 45
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A7V5NYF3_9BACT (50S ribosomal protein L34 n=1 Tax=Thermodesulfatator atlanticus TaxID=501497 RepID=A0A7V5NYF3_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 7.400e-8 Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS IKRKR HGF R +TR G++IL R+ KGRWRL +
Sbjct: 1 MKRTYQPSRIKRKRVHGFRARMRTRAGRRILANRRRKGRWRLTV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A2E9GUB9_9DELT (50S ribosomal protein L34 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9GUB9_9DELT) HSP 1 Score: 58.2 bits (139), Expect = 8.260e-8 Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 3
Query: 681 IKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+KRTYQPS I+R+RKHG+ R KTR G++IL+RR+ KGRWRL +
Sbjct: 1 MKRTYQPSRIRRRRKHGWRARMKTRGGREILRRRRAKGRWRLVV 44
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Match: A0A7S2CLU0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLU0_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 9.990e-8 Identity = 28/46 (60.87%), Postives = 41/46 (89.13%), Query Frame = 3
Query: 675 MAIKRTYQPSTIKRKRKHGFLYRAKTRLGKKILQRRQEKGRWRLGI 812
+AIKRT+QPST+++KR+HGFL R ++R+G+KI+QRR+ KGR RL +
Sbjct: 159 LAIKRTFQPSTVRKKRQHGFLVRIRSRVGRKIVQRRRNKGRSRLSL 204 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig94.15944.1 >prot_D-herbacea_M_contig94.15944.1 ID=prot_D-herbacea_M_contig94.15944.1|Name=mRNA_D-herbacea_M_contig94.15944.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=224bp MVLRSLSRAGVEIGVKVVGKGRSVAAISHKLAGREARHSSSWVGQGQLGRback to top mRNA from alignment at D-herbacea_M_contig94:470579..474468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_M_contig94.15944.1 ID=mRNA_D-herbacea_M_contig94.15944.1|Name=mRNA_D-herbacea_M_contig94.15944.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3890bp|location=Sequence derived from alignment at D-herbacea_M_contig94:470579..474468+ (Desmarestia herbacea DmunM male)back to top Coding sequence (CDS) from alignment at D-herbacea_M_contig94:470579..474468+ >mRNA_D-herbacea_M_contig94.15944.1 ID=mRNA_D-herbacea_M_contig94.15944.1|Name=mRNA_D-herbacea_M_contig94.15944.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1344bp|location=Sequence derived from alignment at D-herbacea_M_contig94:470579..474468+ (Desmarestia herbacea DmunM male)back to top |