mRNA_D-herbacea_F_contig100.241.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.241.1
Unique NamemRNA_D-herbacea_F_contig100.241.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Match: D7FHX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX4_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 3.460e-79
Identity = 135/241 (56.02%), Postives = 159/241 (65.98%), Query Frame = 1 
Query:    1 YRFSRVSREIQHLVHEIQAVQPPYHNIPNPGRNLGYIPSFSWQYMGRNMRPLMESLCWILAAMTSGLHDATFTLHPHRGWNVSPLRTRAHLAPEPATGHRGVTGHTAVE----TKPSRRGHEDAEKITLGVVMERRSNHSPHRLIQGILEGLDRSKFRVVVFARDVNPDDTYPPAGTAILEAADEVLIMPWHRLATGMPDPFLERQVVEKAKVPFGHGHPVTSGSPAIDYFVGSNLFETTA 711
            +RFSRVS E + LV  IQ    P  N+PNPGR+L +IPSFSW Y+GRNMRPLMESLCWILAAMT GLH+A   L P   W+ S    R         G RG  G         T P     +D  +IT+G VMER  N SPHRLIQG+LEG+DRS+FR+VVF++D      Y  AG A+LEAA+EV I PWH  A G+ DPF +R V+   +V FGHGHPVTSGSP IDYFV S+LFETTA
Sbjct:    2 FRFSRVSAETRRLVEHIQTSDAPLRNVPNPGRDLIHIPSFSWPYLGRNMRPLMESLCWILAAMTVGLHEAIARLQPRNAWDNSTSSGRQ--------GTRGAFGEGEQPQISLTPPPSIATKDV-RITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSQDYT--GYYCEAGKALLEAAEEVKIFPWHPFAEGLTDPFADRGVIASVQVVFGHGHPVTSGSPGIDYFVSSDLFETTA 231
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BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Match: A0A6H5JQ47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ47_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 8.630e-47
Identity = 102/234 (43.59%), Postives = 125/234 (53.42%), Query Frame = 1 
Query:  145 MRPLMESLCWILAAMTSGLHDATFTLHPHRGWNVSPLRTRAHLAPEPATGHRGVTGHTAVETKPSRRGHEDAEKITLGVVMERRSNHSPHRLIQGILEGLDRSKFRVVVFARDVNPDDTYPPAGTAILEAADEVLIMPWHRLATGMPDPFLERQVVEKAKVP---------------------------FGHGHPVTSGSPAIDYFVGSNLFETTASIEGREIRKLAGAGSDIN 765
            MRPLMESLCWILAA+  GLH+A   L P + W  + L                      +E K  RRG     +IT+G VMER  N SPH LIQ ILE +DRS+FR+VVF+RD    D Y  AG A+ EAA+EV I PWH    G+ DPF +R V+   +V                            FGHGH VTSGSP ID FV S+L+ETTASI+ RE+ +L    +  N
Sbjct:    1 MRPLMESLCWILAALMVGLHEAIAQLQPRKAWTTASL----------------------LEDK-ERRGRV---RITVGFVMERWGNRSPHHLIQRILESVDRSRFRLVVFSRDYT--DCYCEAGQALPEAAEEVKIFPWHPFVEGLTDPFADRGVIASVQVDVLLSAALGNTLWSHLLALGRLAPVQVVFGHGHSVTSGSPGIDCFVSSDLYETTASIDARELAELPAPRATYN 206
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BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Match: A0A024TCF2_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCF2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.360e-5
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = 1 
Query:  364 KITLGVVMERRSNHSPHRLIQGILEGLDRSKFRVVVFARD-VNPDDTYPPAGT------AILEAADEVLIMP------WHRLATGMPDPFLERQVVEKAKVPF-GH-----------GHPVTSGSPAIDYFVGSNLF--ETTASIEGREIRKLAGAGS 756
            KI +G V      HS  +LIQ ++E +DR++F VVV A     P DT   + T      AI EAAD  +++P       H +     D  +  ++   A + F  H           GHP+T+G P+IDYF+ S  F  +   S +GR + ++ G  +
Sbjct:  543 KIKVGFVSSWFRVHSVGKLIQRVIETIDRNQFHVVVLAATHFFPHDTVATSTTTDAITRAIQEAADAFVVLPASQDMAMHMILQEALDVLVYPEIGMDAWMYFLAHRRLAPIQCMFWGHPITTGLPSIDYFIASEFFFADFFESNDGRRMDEMHGGAT 700
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BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Match: A0A024TB82_9STRA (Glyco_transf_41 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TB82_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.560e-5
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = 1 
Query:  364 KITLGVVMERRSNHSPHRLIQGILEGLDRSKFRVVVFARD-VNPDDTYPPAGT------AILEAADEVLIMP------WHRLATGMPDPFLERQVVEKAKVPF-GH-----------GHPVTSGSPAIDYFVGSNLF--ETTASIEGREIRKLAGAGS 756
            KI +G V      HS  +LIQ ++E +DR++F VVV A     P DT   + T      AI EAAD  +++P       H +     D  +  ++   A + F  H           GHP+T+G P+IDYF+ S  F  +   S +GR + ++ G  +
Sbjct:  543 KIKVGFVSSWFRVHSVGKLIQRVIETIDRNQFHVVVLAATHFFPHDTVATSTTTDAITRAIQEAADAFVVLPASQDMAMHMILQEALDVLVYPEIGMDAWMYFLAHRRLAPIQCMFWGHPITTGLPSIDYFIASEFFFADFFESNDGRRMDEMHGGAT 700
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BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Match: A0A7S2JV56_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JV56_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.390e-5
Identity = 50/176 (28.41%), Postives = 84/176 (47.73%), Query Frame = 1 
Query:  226 PHRGWNVSPLRTRAHLAPEPATGHRGVTGHTA--VETKPSRRGHEDAE-KITLGVVMERRSNHSPHRLIQGILEGLDRSKFRVVVFA----RDVNPDDTYPPAGTAILEA----------ADEVLIMPWHRLATGMPDPFL-ERQVVEKAKVPFGHGHPVTSGSPAIDYFVGSNLF 699
            P++G+N +PL ++ +        ++ +  + +  +  +  R GHE    KI +G   +   NHS  +L  G++ GLDR  F V++F+    +D   D+    +    +E           +  + IM +  +  GM D F+     +   +V    GHPVTSG P IDYF+ SNLF
Sbjct:  171 PYQGFNDAPLMSKINRL------YQAIFPNLSRVLPAQTEREGHEAGRRKIRVGFASQYFRNHSVCKLFCGLISGLDRDFFDVIIFSSATVKDSYTDEVSERSEFVRVEGFLSNNRHLALSKNLDIMVYPDI--GMGDSFIWAHSRLANIQVSLW-GHPVTSGMPHIDYFISSNLF 337
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHX4_ECTSI3.460e-7956.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ47_9PHAE8.630e-4743.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TCF2_9STRA3.360e-531.01Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A024TB82_9STRA3.560e-531.01Glyco_transf_41 domain-containing protein n=2 Tax=... [more]
A0A7S2JV56_9STRA7.390e-528.41Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:696438..698330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006240.2
Exons2
Model size804
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.5401604-CDS-D-herbacea_F_contig100:696437..6970651622927416.5401604-CDS-D-herbacea_F_contig100:696437..697065Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 696438..697065 +
1690790159.5039296-CDS-D-herbacea_F_contig100:696437..6970651690790159.5039296-CDS-D-herbacea_F_contig100:696437..697065Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 696438..697065 +
1622927416.5555484-CDS-D-herbacea_F_contig100:698154..6983301622927416.5555484-CDS-D-herbacea_F_contig100:698154..698330Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 698155..698330 +
1690790159.5177238-CDS-D-herbacea_F_contig100:698154..6983301690790159.5177238-CDS-D-herbacea_F_contig100:698154..698330Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 698155..698330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.241.1prot_D-herbacea_F_contig100.241.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 696438..698330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.241.1

>prot_D-herbacea_F_contig100.241.1 ID=prot_D-herbacea_F_contig100.241.1|Name=mRNA_D-herbacea_F_contig100.241.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=268bp
YRFSRVSREIQHLVHEIQAVQPPYHNIPNPGRNLGYIPSFSWQYMGRNMR
PLMESLCWILAAMTSGLHDATFTLHPHRGWNVSPLRTRAHLAPEPATGHR
GVTGHTAVETKPSRRGHEDAEKITLGVVMERRSNHSPHRLIQGILEGLDR
SKFRVVVFARDVNPDDTYPPAGTAILEAADEVLIMPWHRLATGMPDPFLE
RQVVEKAKVPFGHGHPVTSGSPAIDYFVGSNLFETTASIEGREIRKLAGA
GSDINTTVHENFTTEVTP
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mRNA from alignment at D-herbacea_F_contig100:696438..698330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.241.1 ID=mRNA_D-herbacea_F_contig100.241.1|Name=mRNA_D-herbacea_F_contig100.241.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1893bp|location=Sequence derived from alignment at D-herbacea_F_contig100:696438..698330+ (Desmarestia herbacea DmunF female)
TACAGATTTTCACGGGTTTCTCGGGAGATTCAGCACCTCGTACACGAAAT
CCAGGCGGTCCAACCGCCATACCACAACATACCCAACCCCGGGCGGAATT
TAGGCTATATCCCGAGTTTTTCTTGGCAGTACATGGGGCGCAACATGCGC
CCGCTCATGGAAAGCCTATGTTGGATCCTTGCGGCCATGACATCAGGGCT
ACACGATGCGACTTTCACGCTGCACCCACACAGAGGCTGGAACGTCAGCC
CCCTTAGAACACGCGCACACCTCGCGCCCGAACCGGCGACGGGGCACAGG
GGGGTGACAGGCCACACCGCCGTTGAAACGAAACCCTCGAGAAGGGGGCA
CGAGGATGCGGAGAAAATTACCTTGGGCGTGGTGATGGAAAGGCGAAGCA
ATCACTCGCCGCATCGGCTCATTCAGGGCATCCTCGAGGGGCTAGACCGC
TCGAAGTTTCGAGTCGTGGTGTTTGCGCGCGACGTTAACCCCGACGACAC
ATACCCTCCAGCCGGAACAGCGATTTTGGAAGCGGCGGATGAGGTTTTGA
TCATGCCCTGGCACCGTTTAGCCACGGGGATGCCCGACCCATTCTTGGAG
CGCCAAGTCGTGGAGAAGGCGAAGGTTCGTGCGTTTTGACTCCACACTCT
GTTGTCATCTTGTTTTGATTTTATTAAGCTGCCGGTTGTTGTTGCAGTCT
AGAAATCGTCTCGAGCCCGTTGTTAATAATGATGATCTGTGACATAAGTT
TGTGGACATGTTACGACATACAAGTATACCGATATTTTATGGCAGACTGT
CTTGCCATTCTGTATACGGCCCCCAATCAAATTCAGTCCAAGCGCTCTAC
AAATACACACAAGAAAGACTCCAACGACGAGCAATAGGCACAATTAACAC
AAAGACCCCTGTCGACGACAGAGAATATTTCGTCGGGAGTCGTTCACGCC
GAGGTATTCATTTTTGCCTTTTTCAACCTGTGCAACACCCACGCTGCTCC
TCGTGTCACCTGCTGGCATCATCAGGTAGACGTCTTGTTGTACATGGCCC
TTGGAAACACGTTGGGGAGCCATCTCTTGGCGCTGGGTCGGCTGGCCCCC
ATACAGGTTAGAGTCACCGCCCTCCCCACCACGGTACGTCTAATAATAAT
ACCGCTTTTTCGTTCTACTTTCTTTCAGCTCAGAATAAAGACTCTTATCT
CCATCTCTCTAAACTGACGGGAGCTCTCTTTTGCCCCACACTTACATCAC
CCACGGTTAGGCAACTTTCATGCGCCCGGTTTTTCGTTCTATTTTCTCGG
TGTGCAACGTCCACGCTTCAGGTTGGTATTGGCATAGTAAATAACGGCGA
GAAGCATGTTGCAAGTTTAGGAGCACACTTTACAATGCAGCAGCCTGACT
ACTCCTCCTCTCGGTGAAAGCGTCTTTGTTTTCGACAGAGATGGCCATGT
TTTACGTAGCAGCAGGCGAGGCATGGTATTCGTAGACGCGCCTCCCCAAA
CGAGTCTCGAGACTGAACTGTTCAACAAGATCAAAACAACTACGGTTGCT
ACTGCACACGGTGGTGTAACAATAGGTGTTTACATTCGCGCACAACTGCT
GTATCTTCACACAACACAGTATTCCCATTCAACGTTACCGACAGCGCTTC
CGTCGGTGTACTTCAACCGCCCACCTCAGCCCCCCCCCCTCCCCCCCCGT
TCCGGTGATGCAGTTAGCCTTCGGACATGGTCATCCCGTGACGTCCGGCT
CTCCGGCGATCGACTACTTTGTGGGCAGCAATCTCTTCGAAACGACCGCA
AGCATCGAAGGACGTGAGATTCGTAAGTTGGCGGGCGCAGGCAGCGACAT
AAACACCACCGTACACGAAAATTTTACTACAGAGGTTACACCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:696438..698330+

>mRNA_D-herbacea_F_contig100.241.1 ID=mRNA_D-herbacea_F_contig100.241.1|Name=mRNA_D-herbacea_F_contig100.241.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1608bp|location=Sequence derived from alignment at D-herbacea_F_contig100:696438..698330+ (Desmarestia herbacea DmunF female)
TACAGATTTTCACGGGTTTCTCGGGAGATTCAGCACCTCGTACACGAAAT
CCAGGCGGTCCAACCGCCATACCACAACATACCCAACCCCGGGCGGAATT
TAGGCTATATCCCGAGTTTTTCTTGGCAGTACATGGGGCGCAACATGCGC
CCGCTCATGGAAAGCCTATGTTGGATCCTTGCGGCCATGACATCAGGGCT
ACACGATGCGACTTTCACGCTGCACCCACACAGAGGCTGGAACGTCAGCC
CCCTTAGAACACGCGCACACCTCGCGCCCGAACCGGCGACGGGGCACAGG
GGGGTGACAGGCCACACCGCCGTTGAAACGAAACCCTCGAGAAGGGGGCA
CGAGGATGCGGAGAAAATTACCTTGGGCGTGGTGATGGAAAGGCGAAGCA
ATCACTCGCCGCATCGGCTCATTCAGGGCATCCTCGAGGGGCTAGACCGC
TCGAAGTTTCGAGTCGTGGTGTTTGCGCGCGACGTTAACCCCGACGACAC
ATACCCTCCAGCCGGAACAGCGATTTTGGAAGCGGCGGATGAGGTTTTGA
TCATGCCCTGGCACCGTTTAGCCACGGGGATGCCCGACCCATTCTTGGAG
CGCCAAGTCGTGGAGAAGGCGAAGGTTCTACAGATTTTCACGGGTTTCTC
GGGAGATTCAGCACCTCGTACACGAAATCCAGGCGGTCCAACCGCCATAC
CACAACATACCCAACCCCGGGCGGAATTTAGGCTATATCCCGAGTTTTTC
TTGGCAGTACATGGGGCGCAACATGCGCCCGCTCATGGAAAGCCTATGTT
GGATCCTTGCGGCCATGACATCAGGGCTACACGATGCGACTTTCACGCTG
CACCCACACAGAGGCTGGAACGTCAGCCCCCTTAGAACACGCGCACACCT
CGCGCCCGAACCGGCGACGGGGCACAGGGGGGTGACAGGCCACACCGCCG
TTGAAACGAAACCCTCGAGAAGGGGGCACGAGGATGCGGAGAAAATTACC
TTGGGCGTGGTGATGGAAAGGCGAAGCAATCACTCGCCGCATCGGCTCAT
TCAGGGCATCCTCGAGGGGCTAGACCGCTCGAAGTTTCGAGTCGTGGTGT
TTGCGCGCGACGTTAACCCCGACGACACATACCCTCCAGCCGGAACAGCG
ATTTTGGAAGCGGCGGATGAGGTTTTGATCATGCCCTGGCACCGTTTAGC
CACGGGGATGCCCGACCCATTCTTGGAGCGCCAAGTCGTGGAGAAGGCGA
AGGTTCCCTTCGGACATGGTCATCCCGTGACGTCCGGCTCTCCGGCGATC
GACTACTTTGTGGGCAGCAATCTCTTCGAAACGACCGCAAGCATCGAAGG
ACGTGAGATTCGTAAGTTGGCGGGCGCAGGCAGCGACATAAACACCACCG
TACACGAAAATTTTACTACAGAGGTTACACCTCCTTCGGACATGGTCATC
CCGTGACGTCCGGCTCTCCGGCGATCGACTACTTTGTGGGCAGCAATCTC
TTCGAAACGACCGCAAGCATCGAAGGACGTGAGATTCGTAAGTTGGCGGG
CGCAGGCAGCGACATAAACACCACCGTACACGAAAATTTTACTACAGAGG
TTACACCT
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