mRNA_D-herbacea_F_contig117.1227.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig117.1227.1
Unique NamemRNA_D-herbacea_F_contig117.1227.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig117.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig117contigD-herbacea_F_contig117:327025..327643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size619
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig117.1227.1prot_D-herbacea_F_contig117.1227.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig117 327159..327539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.0989978-UTR-D-herbacea_F_contig117:327024..3271581622927559.0989978-UTR-D-herbacea_F_contig117:327024..327158Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 327025..327158 +
1690790232.2733648-UTR-D-herbacea_F_contig117:327024..3271581690790232.2733648-UTR-D-herbacea_F_contig117:327024..327158Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 327025..327158 +
1622927559.1277437-UTR-D-herbacea_F_contig117:327539..3276431622927559.1277437-UTR-D-herbacea_F_contig117:327539..327643Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 327540..327643 +
1690790232.290866-UTR-D-herbacea_F_contig117:327539..3276431690790232.290866-UTR-D-herbacea_F_contig117:327539..327643Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig117 327540..327643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.1137683-CDS-D-herbacea_F_contig117:327158..3275391622927559.1137683-CDS-D-herbacea_F_contig117:327158..327539Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 327159..327539 +
1690790232.282517-CDS-D-herbacea_F_contig117:327158..3275391690790232.282517-CDS-D-herbacea_F_contig117:327158..327539Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig117 327159..327539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig117.1227.1

>prot_D-herbacea_F_contig117.1227.1 ID=prot_D-herbacea_F_contig117.1227.1|Name=mRNA_D-herbacea_F_contig117.1227.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=127bp
MCGVLFFFCLLLRAFFLFIFFLAAVGGRRGRRERWTFPFLERGRGVLNIK
IQLQTGLCLNHGCVCFERQTIFMSAVTIAWYLISSLKRRWRKRVEAALQR
DRRWVGVNAASGRDMRRRPNTRGLTV*
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mRNA from alignment at D-herbacea_F_contig117:327025..327643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig117.1227.1 ID=mRNA_D-herbacea_F_contig117.1227.1|Name=mRNA_D-herbacea_F_contig117.1227.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=619bp|location=Sequence derived from alignment at D-herbacea_F_contig117:327025..327643+ (Desmarestia herbacea DmunF female)
GCTGTTGGAATAGACACACGAATACACGCACGCAGGCACACGCATGAACG
CCGATATTGTACTTTTTTTAGCATCTTGTTGTTTGTGTTTTATGGTGTTG
ATAGGGCAGTGTGTGTGATTTTGTGGGTAAGAGTATGTGTGGTGTTTTGT
TTTTCTTTTGTTTGTTGTTGCGGGCTTTTTTTTTATTTATTTTTTTCTTG
GCCGCTGTTGGTGGGCGGCGTGGAAGGCGCGAGCGGTGGACATTCCCTTT
TCTTGAACGGGGGCGCGGGGTATTGAATATTAAAATTCAACTACAAACAG
GCCTCTGCCTCAACCATGGTTGTGTGTGTTTTGAGCGGCAGACCATTTTT
ATGTCTGCCGTTACGATTGCATGGTACCTCATTTCCTCGCTCAAGCGGCG
ATGGAGGAAGCGCGTCGAAGCAGCGCTGCAGCGTGATCGTAGGTGGGTGG
GGGTAAACGCTGCATCGGGGAGGGATATGCGACGGCGGCCCAACACCCGT
GGTTTAACTGTTTAACGTCAGCGTTTTAAACGCTACCTCTATGCTGCGCG
GTACGCTAATGTACAGTTATAGTATTAACACGTCCCTCTTGAGTCTCACT
CTCGGCGATAGTGTACCCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig117:327025..327643+

>mRNA_D-herbacea_F_contig117.1227.1 ID=mRNA_D-herbacea_F_contig117.1227.1|Name=mRNA_D-herbacea_F_contig117.1227.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=762bp|location=Sequence derived from alignment at D-herbacea_F_contig117:327025..327643+ (Desmarestia herbacea DmunF female)
ATGTGTGGTGTTTTGTTTTTCTTTTGTTTGTTGTTGCGGGCTTTTTTTTT
ATTTATTTTTTTCTTGGCCGCTGTTGGTGGGCGGCGTGGAAGGCGCGAGC
GGTGGACATTCCCTTTTCTTGAACGGGGGCGCGGGGTATTGAATATTAAA
ATTCAACTACAAACAGGCCTCTGCCTCAACCATGGTTGTGTGTGTTTTGA
GCGGCAGACCATTTTTATGTCTGCCGTTACGATTGCATGGTACCTCATTT
CCTCGCTCAAGCGGCGATGGAGGAAGCGCGTCGAAGCAGCGCTGCAGCGT
GATCGTAGGTGGGTGGGGGTAAACGCTGCATCGGGGAGGGATATGCGACG
GCGGCCCAACACCCGTGGTTTAACTGTTTAAATGTGTGGTGTTTTGTTTT
TCTTTTGTTTGTTGTTGCGGGCTTTTTTTTTATTTATTTTTTTCTTGGCC
GCTGTTGGTGGGCGGCGTGGAAGGCGCGAGCGGTGGACATTCCCTTTTCT
TGAACGGGGGCGCGGGGTATTGAATATTAAAATTCAACTACAAACAGGCC
TCTGCCTCAACCATGGTTGTGTGTGTTTTGAGCGGCAGACCATTTTTATG
TCTGCCGTTACGATTGCATGGTACCTCATTTCCTCGCTCAAGCGGCGATG
GAGGAAGCGCGTCGAAGCAGCGCTGCAGCGTGATCGTAGGTGGGTGGGGG
TAAACGCTGCATCGGGGAGGGATATGCGACGGCGGCCCAACACCCGTGGT
TTAACTGTTTAA
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