mRNA_D-herbacea_F_contig113.1035.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1035.1
Unique NamemRNA_D-herbacea_F_contig113.1035.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1035.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.630e-92
Identity = 151/258 (58.53%), Postives = 173/258 (67.05%), Query Frame = 1 
Query:   28 IDRIRVKNGYGLNTSALSSSVIGRFDASSEKRCAINRSWEHRYTKDAEFQMAQLQSNHPVRKVLHMQKCYPETVRRLNNKNQRGXXXXXXXXXXXXXXXXRWCRMDDARSTFEXXXXXXXXXXXXQPIKDV---------LVKSETRERVAREYQFCRGKMVFNRTKGREAEVEGILTGKSPLEKHSPLFPARATHQQLLGLVHRPNFPNRPAPEVPRERKWLGDNVGWEGNRGLPTPQAGRNAKDGEVWPWPSSQFP 774
            +++IRVKNGYG  TS LS+SVIG FDASSE+R A NR+W  +Y  DA FQM QLQ NHPVRKVLHMQKCYPETV RLN + +                  RW R + A + +             Q              L  + TR R   EY FCR KM +NRT+GREAEV+GILTG SPL+K  PLFPA+ATHQQLLGLVHRP  P++PAP VPRERKWLGDNVGWEGNRG+ TP AGRNAKDGEV PWPSSQ+P
Sbjct:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQGR------THEPDADRPISGRWHR-NPAPNNYNTSVATQQRHRRPQSSLQADRSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYP 251
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BLAST of mRNA_D-herbacea_F_contig113.1035.1 vs. uniprot
Match: A0A7S2XVD6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVD6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.670e-11
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:  496 TKGREAEVEGILTGKSPLEKHSPLFPARATHQQLLGLVHR--PNFPNRPAPEVPRERKWLGDNVGWEGNRGLPTPQA-GRNAKDGEVWPWPSSQF 771
            T G      G    + P  +  P+FP  A+HQ  L +  +   + P + AP   +  +WLGD VGWE NRGLPTP   G + KDG + PWP++++
Sbjct:    5 TNGARPVTHGGFASRHPSPE--PIFPQGASHQTQLTIDKKLVGDDPRKSAPPTKQPLRWLGDGVGWENNRGLPTPPGVGADGKDGAIKPWPTTKY 97
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BLAST of mRNA_D-herbacea_F_contig113.1035.1 vs. uniprot
Match: A0A835Z766_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z766_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.120e-9
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   10 AAAGESIDRIRVKNGYGLNTSALSSSVIGRFDASSEKRCAINRSWEHRYTKDAEFQMAQLQSNHPVRKVLHMQKCYPETVRRLN 261
            A AG  + + RV NGYG  TS  S S IG +DAS+ KR   + ++  ++  DA +Q  +    HP +K LH+QKCYP+TV+ L+
Sbjct:    6 ADAGVEVHQRRVVNGYGSTTSLFSPSNIGLYDASALKRQQQSAAFVKQFEADAHYQRQEYSRKHPFKKQLHLQKCYPQTVKLLD 89
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BLAST of mRNA_D-herbacea_F_contig113.1035.1 vs. uniprot
Match: A0A482SA97_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SA97_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  526 ILTGKSPLEKHSPLFPARATHQQLLGLVHRPNFP--NRPAPEVPRERKWLGDNVGW 687
            I+ G +P+ K   LFP  ATH Q+L L +    P  N+  PEVPR RKW GD+ GW
Sbjct:    4 IIGGTAPMPKIE-LFPQGATHTQILALTNTLKAPDANKLPPEVPRLRKWRGDDKGW 58
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTP9_ECTSI1.630e-9258.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVD6_9STRA1.670e-1137.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z766_9STRA7.120e-942.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SA97_9ARCH2.240e-548.21Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:649839..653840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009320.1
Exons3
Model size774
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1035.1prot_D-herbacea_F_contig113.1035.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 649839..653840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.4918554-CDS-D-herbacea_F_contig113:649838..6499641622927535.4918554-CDS-D-herbacea_F_contig113:649838..649964Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 649839..649964 +
1690790220.8740237-CDS-D-herbacea_F_contig113:649838..6499641690790220.8740237-CDS-D-herbacea_F_contig113:649838..649964Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 649839..649964 +
1622927535.509688-CDS-D-herbacea_F_contig113:651729..6522941622927535.509688-CDS-D-herbacea_F_contig113:651729..652294Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 651730..652294 +
1690790220.8832183-CDS-D-herbacea_F_contig113:651729..6522941690790220.8832183-CDS-D-herbacea_F_contig113:651729..652294Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 651730..652294 +
1622927535.5208468-CDS-D-herbacea_F_contig113:653757..6538401622927535.5208468-CDS-D-herbacea_F_contig113:653757..653840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 653758..653840 +
1690790220.8964121-CDS-D-herbacea_F_contig113:653757..6538401690790220.8964121-CDS-D-herbacea_F_contig113:653757..653840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 653758..653840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1035.1

>prot_D-herbacea_F_contig113.1035.1 ID=prot_D-herbacea_F_contig113.1035.1|Name=mRNA_D-herbacea_F_contig113.1035.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=258bp
MATAAAGESIDRIRVKNGYGLNTSALSSSVIGRFDASSEKRCAINRSWEH
RYTKDAEFQMAQLQSNHPVRKVLHMQKCYPETVRRLNNKNQRGGGHPSST
DSTTPPASSRWCRMDDARSTFESQQQQQQQQQQQQPIKDVLVKSETRERV
AREYQFCRGKMVFNRTKGREAEVEGILTGKSPLEKHSPLFPARATHQQLL
GLVHRPNFPNRPAPEVPRERKWLGDNVGWEGNRGLPTPQAGRNAKDGEVW
PWPSSQFP
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mRNA from alignment at D-herbacea_F_contig113:649839..653840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1035.1 ID=mRNA_D-herbacea_F_contig113.1035.1|Name=mRNA_D-herbacea_F_contig113.1035.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4002bp|location=Sequence derived from alignment at D-herbacea_F_contig113:649839..653840+ (Desmarestia herbacea DmunF female)
ATGGCTACTGCAGCAGCAGGAGAATCTATCGACCGTATTCGCGTCAAGAA
TGGGTACGGGCTCAACACGTCGGCGCTGAGCTCTTCTGTCATAGGCCGTT
TCGATGCGAGCTCGGAGAAAAGGTGCGTTCCCGTTTGGGCAGTAATTGCG
CCGCATATCCTTCACTCGCTGTTCTGTTCCCTGGCCATGTATCCAACAAC
AACGTGTGTCTGTCCGCTTGTGTGTGTTCTCACGAGGGATTGTGGCAAAA
CCCCAGACGAAAATCGCCTCAAGTACACGCGATACGGGCAGCACGGCGCC
ATGTAAGACGTGCTATCCTGGAAAAGCATCACCACCACCACGTGTTCTAG
AGGTACCCGATGTTGTTTGTTGTCTCTTCTCTCTACAAATGCCCACGACA
TCCAGTAGCGTACTCAGAGTCTGTACACGAGTGCTGATTCTTCTATCCTA
TAATAGAGATTCGAAATTCTGTGGTCACAAGGTACACCATAGCGCATCAA
ATCGCAAAAATTAAAGAAAAATAAGAAGAAAAAAGAAAACTGAAAGATAC
AAAAACATGCGTTATGTATTGTACCCGTACGAGTATCTTTTTTTTTTTCC
TCGCGTCGGACGGGAAATAACTTAGTCCCCACTCTTCCAAAGCAAGCTAC
GAATACTTGTACGAGGTACGTCTGTGTTTAACCGTCTGGTAGAACATAAC
ACTGTTGTCATTACGGCGGCATGGGTACGTACGTAGGGTGCCCCTCTGCT
TCCATTGCAGTATTAGGCGCTGGAGATATAGCCATCCGCCGGGGAGATAC
GCTCCCGTCCCCAGGTAGTCTGGGTTTTATTGCGCAGCTCTGTGGAGATG
AGCTTTATAAGGAGGGGTAAAATCCCACAACGTCCGTCGAGACAAAATCC
TTTTATCACATTGGCGACGTCGATGAGATATCTGACTTTAGGTTGGCAAA
GACCCGGGTTCAATTCCCGCCACCCACCATAAATCCTCCTCGAAAAACGT
GAATCCTGGAAAAATTGTGGCGGAACCAAAAATATGATAATATTCGAACT
GATGAAACTTCTGATCACGCGTAGCAACCTAAACTAAAACACGCACTGAA
GGGTGTTGAGAAAAAAAGGGAGTGTTTCGCCGCCAGCCGGTCGCGTTCCG
GTTACCTCTAAGAAGACTTCTTGCCTAAGAGTAAAAGTCTCGAAAGGGGG
GGGGTAATGTGGAGATGACCTTTTTAAGGGGTAAAATCCCACAACGTCTG
TCGAGACAAAACCCTTTTATCACAGCTCGTACTTTTGAATAAAAACCCAG
ACCAGGTTATTGGCTTTCCCGCAGGACCCGGTCCTGTTATATATAAGGTT
CACTTTACCTACCGCCCGTTCGGGCGTTGGCCCTCGGTTGTCTGTCGTGC
CTGAAAGAGGTACCACTATCCTTACAATGCATATACAGTACCTACAAGTA
GTGTCTTGTGCTATACTATGCTTTGTTGGAGGTACACCTGCATTCTAGCT
CTACAGAAGACACACATCCTACAGGACTTACTGGATACATAGCCTATGTA
TTAGAAAAATGATTGCCATCTTACGGACTCTGCACGCCTCTTTATGGTCA
CGATACAAGCCCTCCTTACAACAATAATACATACCTGGTATTCTATTTCG
CAAATCACTCACCGCTTCATAAAAATAAGTAGCACGCACAGTAGTAGAGG
CAATAACACTGTACGACTACTAGCGACACTCAAGAACGCACGGCGAACCT
CGCCCAAGAGCGTAGTAGACGTGCTATTGCTACTGGAGCGCGGCCGTCCA
TTTCTATGTTCGATATCCTCCAGACGTTGAGTTACCACGTCTGTCTGTGT
GCCATTGACTTTCTTACTTACCCTTGGCGTGTTGCAGGCAGGCGATCAAC
CGGAGTTGGGAACACCGTTACACCAAAGACGCCGAGTTCCAGATGGCACA
ACTCCAGAGCAATCACCCCGTTCGAAAGGTCCTCCACATGCAGAAGTGCT
ACCCCGAAACCGTACGTCGTTTGAACAACAAAAATCAACGAGGCGGCGGA
CACCCCAGTTCCACCGATAGTACCACGCCCCCAGCCAGCAGCAGGTGGTG
TCGGATGGATGATGCACGATCAACATTCGAATCACAACAACAGCAACAAC
AACAACAACAACAACAACAACCGATAAAAGATGTGCTTGTGAAGAGCGAG
ACGCGGGAAAGGGTAGCCCGAGAGTACCAATTCTGCAGGGGTAAGATGGT
GTTCAACCGGACAAAGGGAAGAGAGGCCGAGGTGGAAGGTATCCTCACCG
GAAAGTCACCCTTAGAGAAACACAGCCCGCTGTTTCCTGCGCGAGCCACG
CACCAGCAGCTTTTGGGGCTCGTGCACCGACCCAACTTTCCCAATAGGCC
GGCCCCTGAAGTGCCCAGAGAGAGGAAGTGGCTCGGGGATAATGTCGGCT
GGGAGGGTGAGCGTTGTTACTGCGTGGTATTTTTATTTTGCGCGGAAAAC
TCCTGTAAAAAAAAGCGTGTTACTTGCCCTTTGCGGTGTGAGTAGAACGT
ACTCTGGTAGAGTTTGCGTTCTCCATCGCCACAGTATATTGATAATGGAT
AGAGATGTTAGCTGATACATTTCTACTTCATGTAGACTAGATTATTAGTA
GACATTACTGCTTCCCTTTCCCCTCGCTAACCGTGCAATCCTTCTTCCCT
CTCCCCGGCCCCATTCTCAGGCGCGTTATTAATAAAAAGGGCATTTTGTG
TTTGGTGCCATTGACCTGGCGGCGTGAACGTTTTTTTTTTTTTAACAATG
TCAACGCCCATGCATACTTCTAGACTCTCTCGTTCTCTGCAGCTTTTGTT
AGTTTACCCTCCTCCTTGCTGTCTGCAATGAGTGATGGAGACCATTTGGC
ATGGATCCAAAAAGGAACATTTATTAATGGCTGAACTGTTTGGGGGGTGC
GCAGCAGCACGAGCTCGTGCAGCATGATTTAGATGGCCTGGAGATCTCTC
GGTCAAGGAGCTCCTTCGCCACCACCAAACAAGGGGGGGGGGTGCATCAC
GCCGTTTAGTCTAGGATCGTTGCTGGAGGCTGGACTGTTGGTAAAATCTC
CTACTTCGAAGTCTATTAGAGAACAAAATACACACAAAGCATACTTGACG
TTGACTGAGAAGACACACGGAGTGGGGTACGGTATTGCACGCTGTGTGTA
GTCGTGCCTCCTGCTGAATTGGCAACATTGATGCGCTGTGTTGCTTGGAG
GGGGGCGTACTCATTTGTTGCTTGCCTGAGTCATTTAACCATTGACCACG
CGTCCCTTTCGAGGTGGAGCACCATTCTCACTCCTAATAGAGACACCTCT
AACATTTGGGCGCTCTTTACGTTTGCTTGGGGGGGGGGGCATTATATTAC
TATAATAAAGTTGTTACTGTTTTTTTTTTCTGTGATATTTATAGACTAGT
TTACTATAGCTGGTGTCATATCTGTGAAACGCAGCGTGGGCGGCGAAAAC
TCGAGCACATGGCACGCCCCGAGCGCGAGCTATCAATGCAATATTATGTT
GGTGGACGCATGCGTACAGTAGGTTTAGCATTTTTTTGTAGTTTGAGGCA
TTTAGATTTTTTTTTACTCTTTAATATCTACAGTGTCAACAACAACAACA
ACAACAACAACAATAGTGTGTTCGTTATGGTTCGGGTTGGGCTTAATGAT
GGAATTTTCCAATAAACTGCATAACAGCCCACCACGTCGTTTCTTATCAT
ATAATAGTACGAACATCCGAAAGATCCGACCCACAAAAACAATGGTTGAG
GCGACTCCATGCGTAACCCTAACTACGACCCCCCCCCCCCTGAATGATTG
TGCGCGTCCGGTGTGATTGGCTGGTGATGATACAATTACGTATTCGGGTA
TCGGATGGATGATGACCAGGAAACCGAGGGCTGCCCACACCACAAGCCGG
TCGCAACGCGAAAGACGGAGAAGTTTGGCCTTGGCCCTCGTCGCAGTTCC
CT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:649839..653840+

>mRNA_D-herbacea_F_contig113.1035.1 ID=mRNA_D-herbacea_F_contig113.1035.1|Name=mRNA_D-herbacea_F_contig113.1035.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1548bp|location=Sequence derived from alignment at D-herbacea_F_contig113:649839..653840+ (Desmarestia herbacea DmunF female)
ATGGCTACTGCAGCAGCAGGAGAATCTATCGACCGTATTCGCGTCAAGAA
TGGGTACGGGCTCAACACGTCGGCGCTGAGCTCTTCTGTCATAGGCCGTT
TCGATGCGAGCTCGGAGAAAAGGTGCATGGCTACTGCAGCAGCAGGAGAA
TCTATCGACCGTATTCGCGTCAAGAATGGGTACGGGCTCAACACGTCGGC
GCTGAGCTCTTCTGTCATAGGCCGTTTCGATGCGAGCTCGGAGAAAAGGT
GCGCGATCAACCGGAGTTGGGAACACCGTTACACCAAAGACGCCGAGTTC
CAGATGGCACAACTCCAGAGCAATCACCCCGTTCGAAAGGTCCTCCACAT
GCAGAAGTGCTACCCCGAAACCGTACGTCGTTTGAACAACAAAAATCAAC
GAGGCGGCGGACACCCCAGTTCCACCGATAGTACCACGCCCCCAGCCAGC
AGCAGGTGGTGTCGGATGGATGATGCACGATCAACATTCGAATCACAACA
ACAGCAACAACAACAACAACAACAACAACAACCGATAAAAGATGTGCTTG
TGAAGAGCGAGACGCGGGAAAGGGTAGCCCGAGAGTACCAATTCTGCAGG
GGTAAGATGGTGTTCAACCGGACAAAGGGAAGAGAGGCCGAGGTGGAAGG
TATCCTCACCGGAAAGTCACCCTTAGAGAAACACAGCCCGCTGTTTCCTG
CGCGAGCCACGCACCAGCAGCTTTTGGGGCTCGTGCACCGACCCAACTTT
CCCAATAGGCCGGCCCCTGAAGTGCCCAGAGAGAGGAAGTGGCTCGGGGA
TAATGTCGGCTGGGAGGGCGATCAACCGGAGTTGGGAACACCGTTACACC
AAAGACGCCGAGTTCCAGATGGCACAACTCCAGAGCAATCACCCCGTTCG
AAAGGTCCTCCACATGCAGAAGTGCTACCCCGAAACCGTACGTCGTTTGA
ACAACAAAAATCAACGAGGCGGCGGACACCCCAGTTCCACCGATAGTACC
ACGCCCCCAGCCAGCAGCAGGTGGTGTCGGATGGATGATGCACGATCAAC
ATTCGAATCACAACAACAGCAACAACAACAACAACAACAACAACAACCGA
TAAAAGATGTGCTTGTGAAGAGCGAGACGCGGGAAAGGGTAGCCCGAGAG
TACCAATTCTGCAGGGGTAAGATGGTGTTCAACCGGACAAAGGGAAGAGA
GGCCGAGGTGGAAGGTATCCTCACCGGAAAGTCACCCTTAGAGAAACACA
GCCCGCTGTTTCCTGCGCGAGCCACGCACCAGCAGCTTTTGGGGCTCGTG
CACCGACCCAACTTTCCCAATAGGCCGGCCCCTGAAGTGCCCAGAGAGAG
GAAGTGGCTCGGGGATAATGTCGGCTGGGAGGGAAACCGAGGGCTGCCCA
CACCACAAGCCGGTCGCAACGCGAAAGACGGAGAAGTTTGGCCTTGGCCC
TCGTCGCAGTTCCCTGAAACCGAGGGCTGCCCACACCACAAGCCGGTCGC
AACGCGAAAGACGGAGAAGTTTGGCCTTGGCCCTCGTCGCAGTTCCCT
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