prot_D-herbacea_F_contig105.557.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig105.557.1
Unique Nameprot_D-herbacea_F_contig105.557.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length296
Homology
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 7.340e-74
Identity = 110/155 (70.97%), Postives = 136/155 (87.74%), Query Frame = 0
Query:  140 GKGESAQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            GKGES +NRAL  VVYLLPMLDG++CG ++F  +P LG++V+ VLAPALA+WDNVPF+PLVMFI+L +S RRQ+TSRF+RFN+QQAILVDI T++LGLLG+A GY+ PEGEQ +TNFAFYCL+ AV YAVAET RG+ AN+IPLISA AE+Q+GP
Sbjct:    9 GKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 163          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A6H5LCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 5.560e-71
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 0
Query:  141 KGESAQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            KGES +NRAL  VVYLLPMLDG++CG ++F  +P LG++V+ VLAPALA+WDNVPF+PLVMFI+L +S RRQ+TSRF+RFN+QQAILVDI T++LGLLG+A GY+ PEGEQ +TNFAFYCL+ AV YAVAET RG+ AN+IPLISA AE+Q+GP
Sbjct:  151 KGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 304          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.270e-36
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 0
Query:  148 RALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            R LA   Y+LP+LDG+  G N++  +P +G  VY VL PALA+W+ VPFL   +F+  T +AR    SR VRF++QQAIL+DI  I+LGLL +    + P G  V     FY LI+AV Y++   ++G+  NEIP+IS  A+ QIGP
Sbjct:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGP 222          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S0I0B2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0B2_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 9.790e-27
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = 0
Query:  147 NRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVP-EGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            +RA AA VYL P+ DGI  G+ LF  +P  GA+   +L  A A +D++PF  L+ FI L+  +R    SRF+RFN+QQAIL+DI  II    G  VG +VP E +QVL+N  FY ++ A+GY+     +G+T +++P++S  A   IGP
Sbjct:   81 DRAFAAAVYLFPITDGIFFGKFLFTSVPVFGALCLPILQ-ASAAFDSIPFSGLIFFIGLSSMSRNPGLSRFLRFNLQQAILLDIAFIIPNFFGG-VGQMVPIEVQQVLSNTVFYSMVLAIGYSWFSIAQGKTPDQVPVVSEAANQAIGP 227          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S2CM34_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CM34_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 2.300e-26
Identity = 62/152 (40.79%), Postives = 97/152 (63.82%), Query Frame = 0
Query:  145 AQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVL-TNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGPL 295
            A +RA++A VY+LP+LDG   G N++   P +G+  Y +L P +  + NVPF  L++FI L+   R++  SR+VRFNIQQA+L DI  II  + G A G + P   Q + +NF +Y ++  V Y+  +  +G++ + +P+IS  A +QIGPL
Sbjct:   33 AADRAVSAAVYILPILDGFVFGSNIYATFPLVGSAAYKLL-PLVNTFQNVPFAGLILFIGLSTFTRKEGLSRYVRFNIQQALLTDIALIIPTVFGGA-GRMFPLELQAMGSNFVWYAMVTIVCYSWVQIAQGKSPDGVPVISEAAAIQIGPL 182          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 110 bits (275), Expect = 1.700e-25
Identity = 61/150 (40.67%), Postives = 91/150 (60.67%), Query Frame = 0
Query:  145 AQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            A  R LA + Y+LP +DG   G  +++ +P +GA+      P +A ++++PF  LV FI +++  R  N SRFVRFNIQQA+L+DI  I+ GL G        E + + TNF FY  +  VGYA+    +G+  +++PL+S  A MQIGP
Sbjct:   72 ALERVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIAGAAF-PFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGPLTKTFPVELQILGTNFIFYAWVLVVGYALFSNAQGKAPDQVPLLSDAASMQIGP 220          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S2MZG4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MZG4_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.530e-24
Identity = 63/153 (41.18%), Postives = 93/153 (60.78%), Query Frame = 0
Query:  144 SAQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVL-TNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGPL 295
            +A  R  AA  YL P+ DG   G  +++ +P LGA+ Y V APA+  +++VPFL L+ FI  +  +R    SRFVRFN+QQA+L+DI  II G +GSA   + P   QVL +N  F  ++  VGYA     +G+  +++P++S  A   IGP+
Sbjct:   51 AAVERVAAAAAYLFPITDGFGFGGYIYQNVPPLGALAYQV-APAINAFNSVPFLGLIFFIAFSSFSRNTGLSRFVRFNLQQALLLDIALIIPGFVGSA-SQMFPVDLQVLGSNTVFEAMLLVVGYAWFSIAQGKVPDQVPVLSNAAFQSIGPM 201          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S4N5C0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5C0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.620e-24
Identity = 63/151 (41.72%), Postives = 91/151 (60.26%), Query Frame = 0
Query:  146 QNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAV-GYLVPEGEQV-LTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            Q+R  + + YLLP+ DG   G+ +F   P L AV    +AP     D+VPFL L++F++L++  R  + +R VRFN QQAILVDI  I   L+GS + G  +P       +NF +Y + A VGY+V   +RG+  ++IP IS  AEM +GP
Sbjct:   95 QDRIKSCIPYLLPLADGHHFGKYIFLNFPALRAVDEVTIAPLAHFLDSVPFLSLIVFLVLSLGTRNSDMARGVRFNAQQAILVDIALIFPELIGSGMDGVAMPTVLMASASNFVWYFMTACVGYSVVNNLRGKKPDQIPFISNAAEMAVGP 245          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 9.050e-24
Identity = 61/156 (39.10%), Postives = 90/156 (57.69%), Query Frame = 0
Query:  140 GKGESAQNRALAAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFI-LLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            GK E  ++R  + + Y LP+LD ++ G  LF+  P    +V   LAP  A++  +PFL L +F  +  +  R  N +RF+R+N QQAI++D+  II  L G A   +     +   N  FY ++AAVGYAV E +RG   N+IPL+S   + QIGP
Sbjct:   50 GKPEG-KDRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFGGAAAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNKIPLVSESVDSQIGP 204          
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Match: A0A7S3AEW9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AEW9_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 2.870e-23
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 0
Query:  162 GIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLVMFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGEQVL-TNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGP 294
            G   G  +++ +P +G V YT L P +  + +VPF   V+FI L+   R  N SRFVRFNIQQAIL+DI  II G+L  A G + PE   V+ +NF FY +   VGY+V   V+G+T +++P++S  A MQIGP
Sbjct:   52 GFPYGAYIYQSVPPVGEVAYTFL-PFVNAFQSVPFAGFVLFIGLSTFTRNMNLSRFVRFNIQQAILLDILIIIPGILSGATG-MFPEVLNVMGSNFVFYVMALVVGYSVFSNVQGKTPDQVPILSEAAGMQIGP 183          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C5_ECTSI7.340e-7470.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCJ5_9PHAE5.560e-7170.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUZ7_9STRA2.270e-3646.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0I0B2_9EUKA9.790e-2744.30Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2CM34_9EUKA2.300e-2640.79Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4ES88_CHRCT1.700e-2540.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2MZG4_9EUKA1.530e-2441.18Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4N5C0_9STRA1.620e-2441.72Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2ZG79_9RHOD9.050e-2439.10Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A7S3AEW9_9EUKA2.870e-2345.52Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 148..285
e-value: 2.0E-11
score: 44.0
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 138..292
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 138..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 252..270
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..225
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..205
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 271..295
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..246
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 247..251
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.565
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 225..247
NoneNo IPR availableTMHMMTMhelixcoord: 252..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:747681..751318 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.557.1mRNA_D-herbacea_F_contig105.557.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig105 747462..751614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig105.557.1 ID=prot_D-herbacea_F_contig105.557.1|Name=mRNA_D-herbacea_F_contig105.557.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=296bp
MRPNAPAAAAIAAAAVVHLVAHGVGSVNAFCVAYRPLASSVRTAGAPQAM
SLYSSNREEARGPIYCSSSIGECCSSSPGGALSRLRSSRCSSLSSSLLSS
PRTQMPWSWHSFSSRTTTATSRATLSMRAGGGGGGGGRRGKGESAQNRAL
AAVVYLLPMLDGIECGENLFRVMPELGAVVYTVLAPALAVWDNVPFLPLV
MFILLTISARRQNTSRFVRFNIQQAILVDIGTIILGLLGSAVGYLVPEGE
QVLTNFAFYCLIAAVGYAVAETVRGRTANEIPLISAVAEMQIGPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20