mRNA_D-herbacea_F_contig105.556.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.556.1
Unique NamemRNA_D-herbacea_F_contig105.556.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: D7G3C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.250e-53
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 3
Query:  462 SIMAASSLGQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            S   ASSLGQDIKEFLENEKD+EFEEEISRNPYRLKSWWRYLLAKEGA+RKTRN+IHERALKFLPNSYKLW+QYL ERR AVEGKC+TD ACQIV+NAHERAL+
Sbjct:    5 SAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERALI 108          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A7S3YB58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB58_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.920e-32
Identity = 65/95 (68.42%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  492 DIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALVS 776
            DIK FLE+E D E+EEEISRNPY LKSWWRYL  K+ AR KTR V++ERALKFLP S+KLWH YL ER  AVE K V D A ++V NA+ERALV+
Sbjct:   26 DIKSFLESEADFEYEEEISRNPYALKSWWRYLDHKKNARPKTRYVVYERALKFLPGSFKLWHSYLKERTLAVEDKSVLDPAREVVANAYERALVT 120          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A836CA78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA78_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.310e-30
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 3
Query:  486 GQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERAL 770
            G++++  L +  D E+E EISR P+RLK+W RYL AK    R+ RN++HERALKFLP SYKLWHQYL ER +AVEGKC+TD ACQIV+N  ERAL
Sbjct:    8 GEEVQALLADATDFEYETEISRAPFRLKNWVRYLAAKTSTNRRARNILHERALKFLPTSYKLWHQYLTERLSAVEGKCITDPACQIVVNTFERAL 102          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A151NRD7_ALLMI (Pre-mRNA-splicing factor SYF1-like n=2 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NRD7_ALLMI)

HSP 1 Score: 97.4 bits (241), Expect = 4.300e-22
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  516 EKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            E+D+++EEEI RNP+ +K W RY+  K+ A R   N+++ERALK LP SYKLW+ YL +RR  V+ +CVTD A + V N HERALV
Sbjct:   19 EEDLQYEEEILRNPFSVKCWMRYIEFKQSAPRHALNLLYERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPAYEEVNNCHERALV 104          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: I6M4B7_KRYMA (XAB2 (Fragment) n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=I6M4B7_KRYMA)

HSP 1 Score: 97.8 bits (242), Expect = 6.470e-22
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            D+ +EEEI RNPY +K W RY+  K+   + T N+I+ERAL+ LP SYKLW+ YL ERR  V+GKC+T+ A + V N HERALV
Sbjct:   13 DLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELPGSYKLWYNYLRERRKQVKGKCITEPAFEEVNNCHERALV 96          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A0S7LQ32_9TELE (SYF1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LQ32_9TELE)

HSP 1 Score: 99.4 bits (246), Expect = 7.580e-22
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            D+ +EEEI RNPY +K W RY+  K+   + T N+I+ERALK LP SYKLW+ YL ERR  V+GKC+TD   + V N HERALV
Sbjct:   46 DLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALV 129          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A672MZQ1_SINGR (XPA binding protein 2 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MZQ1_SINGR)

HSP 1 Score: 103 bits (257), Expect = 1.890e-21
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3
Query:  507 LENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            L+ + D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW+ YL ERR  V+GKCVTD A + V N HERALV
Sbjct:    4 LQEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 92          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A2G9SJ12_LITCT (Uncharacterized protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9SJ12_LITCT)

HSP 1 Score: 94.7 bits (234), Expect = 3.710e-21
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  516 EKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            E D+++EEEI RNPY +K W RY+  K+ A     N+I+ERALK LP SYKLW+ YL +RR  V+ +C+TD A + V N HERALV
Sbjct:    8 EDDLQYEEEILRNPYSVKCWMRYIEFKQSASAHALNLIYERALKELPGSYKLWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERALV 93          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A673G278_9TELE (XPA binding protein 2 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673G278_9TELE)

HSP 1 Score: 101 bits (252), Expect = 6.460e-21
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW+ YL ERR  V+GKCVTD A + V N HERALV
Sbjct:   16 DLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 99          
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A8C1DYQ7_CYPCA (XPA binding protein 2 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DYQ7_CYPCA)

HSP 1 Score: 101 bits (252), Expect = 6.780e-21
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
            D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW+ YL ERR  V+GKCVTD A + V N HERALV
Sbjct:   19 DLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 102          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C6_ECTSI2.250e-5387.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YB58_HETAK1.920e-3268.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CA78_9STRA3.310e-3063.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A151NRD7_ALLMI4.300e-2254.65Pre-mRNA-splicing factor SYF1-like n=2 Tax=Alligat... [more]
I6M4B7_KRYMA6.470e-2255.95XAB2 (Fragment) n=1 Tax=Kryptolebias marmoratus Ta... [more]
A0A0S7LQ32_9TELE7.580e-2257.14SYF1 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A672MZQ1_SINGR1.890e-2157.30XPA binding protein 2 n=1 Tax=Sinocyclocheilus gra... [more]
A0A2G9SJ12_LITCT3.710e-2154.65Uncharacterized protein n=1 Tax=Lithobates catesbe... [more]
A0A673G278_9TELE6.460e-2159.52XPA binding protein 2 n=1 Tax=Sinocyclocheilus rhi... [more]
A0A8C1DYQ7_CYPCA6.780e-2159.52XPA binding protein 2 n=3 Tax=Cyprinus carpio TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:742337..747333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.5e-47
Seed eggNOG ortholog2880.D7G3C6
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size782
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.556.1prot_D-herbacea_F_contig105.556.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 742337..746866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.16192-CDS-D-herbacea_F_contig105:742336..7424571622927465.16192-CDS-D-herbacea_F_contig105:742336..742457Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 742337..742457 -
1690790185.5453725-CDS-D-herbacea_F_contig105:742336..7424571690790185.5453725-CDS-D-herbacea_F_contig105:742336..742457Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 742337..742457 -
1622927465.1946905-CDS-D-herbacea_F_contig105:746672..7468661622927465.1946905-CDS-D-herbacea_F_contig105:746672..746866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 746673..746866 -
1690790185.5562582-CDS-D-herbacea_F_contig105:746672..7468661690790185.5562582-CDS-D-herbacea_F_contig105:746672..746866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 746673..746866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.208891-UTR-D-herbacea_F_contig105:746866..7473331622927465.208891-UTR-D-herbacea_F_contig105:746866..747333Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 746867..747333 -
1690790185.564353-UTR-D-herbacea_F_contig105:746866..7473331690790185.564353-UTR-D-herbacea_F_contig105:746866..747333Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 746867..747333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.556.1

>prot_D-herbacea_F_contig105.556.1 ID=prot_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=105bp
MAASSLGQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKT
RNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERA
LVSC*
back to top

mRNA from alignment at D-herbacea_F_contig105:742337..747333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.556.1 ID=mRNA_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4997bp|location=Sequence derived from alignment at D-herbacea_F_contig105:742337..747333- (Desmarestia herbacea DmunF female)
CCAGCTGCGTGCGATACTGGTCGGGTTGCCTAGAACCGCCTAGTCGTCGT TGTGGTTGAGCACTGTCTAGGTGTAGGTGTTCCCTGTATTTGTTTTGAAT TGAATGCAACCAGGCACTCGGTGGGAACAAAGAAGCGGCAGAGAGGTTTG CATTTCGGCCACAACACGTGCGGACAGAGAGAGAGAGAGAGAGAGAGGTG CCCTCTGCCCTTCTGGCGCATCACAGCAAACATCAAACAGCAAACAGGGC GCGAGGCGAAGGAAAGCGGATTCACTCTTCAGCTAAGGATACACCAGAGA GCTCGTGTTGGATACATACCTACCCTGGGCAATAAATAAACAGGAGTGGC TGCCTTTGTATCCGGAAGGCGCTTCGAAAACGAGCAAAGCTTTCACGGAG GGCGAGCAACCAAAGACAGAAGTACGAACAAAACAGACACGAGATACGAG TACTCGCAGAGAGCATCATGGCTGCGTCGTCGCTCGGGCAAGACATCAAG GAGTTCTTGGAGAACGAAAAGGATGTGGAGTTCGAGGAGGAGATTTCTCG CAATCCCTATAGGCTCAAGTCTTGGTGGAGGTACCTGCTTGCCAAGGAGG GAGCCAGGCGCAAGACTCGCAACGTGATCCACGAGCGGGCGCTTAAGTTT CTACCCAACAGGTGAGCTATGATATGATACAGGTATTGCTGTAGCGAGCC AAGCGAGCCGACGTTCGGGTTGACGTGTACGTCTTCATGGGCCGTGAGTT TAACGTGCAATGATGCACACTTGCATCGGTTACTTTTTCCGAAATACTAC TACTGTTGTTGGTTACTGTTGTGCTATCGATACTACTACTACTGTACTGT TCTGTTGTACTGCTGTTGGCGTATGTTGGCGTACATGTAAATAGGAAGGG TTGGGTTGGGTTCGGGTTGGGGTCGGGGTGGTTGAGATGGGGTCGTAGGG TGGAGCTGTGTGGGGTATGATAGGAGTTCACTCATCCTTCGAGTGCACAT TGCACGGGCAACGCCGTGGTTGCCTTCTGGTATAATAATGAGGCGGGGAA CGCCGAGCGAAGCGAAGCGTAAACCCTCTTCCTAGTGAGTCGGGCGTGCA CGATCAACGCACATTTTTTTGTTTTGTTTTCGTTCCATTTATTATCTTCG CCCTACGTACTCTTTCTCTAGCTCCATCTTTCTTCGTAACTCAGATCCGG GGTCACATAGCAGGCGCTCCTCCCGCCTTCCCACTACGGTACGTGCCTAC ACTTTTGTCGCGAGAAGAGTGCAGCACTTTCTTGCCTCGTCGACTTTCAT CGAATTGTGCTTACTCGCGCTCTTCATGCGTTCTCCGCGACGGAAAATGA CACAGAAAAGTGCCACCTGGAATCGAACCCCCAACTTCCGCCAACAGAGG AAATGCCCTAGCCATTAGACCACTGCGCCACCCCTGTCATTGGAAAACAT AAAACCGAAAAAGTCACAACCGACCAGTTTGTGTGTATGTGTGTGTATGT GTGTCCTTTTTCGCCCTTCCCATCAACATTGCCAGATGCACACACAACGG AATCAACCTAAACCACTTCCTGCGGGAAACTATAACATAGTACTACTCCA CGCTTCTTGTTTCGCGCCAAACCGTTCGGAATTCGTTTACGGGAACTCGT CGGGACCTCTCCAAACAACGTCTTCCAAATACACAGCCAACAATCGCTCC GCACGTCTTGATGTTCTACAACAACATGACTACGCGTACTGTGCCACCGT GCAAACAGGACACACACCTGGCACCATTTGATTTAGCCTCACTAATCATG GACACATAGACCCTGCTGCCAACTCTCATCTGCTTACGACATGACATGTG GACGGGGAGGTGTCGCGACGGTCGCTACCTTCCCTTATTTTGCGGGGATG TTTCAGGAATTTGCGGTCTTCTCACATCAAACCTCAAACCTCACACGACC CTGACCCTCTGTTCTTTGAACTCAAGCCAGCTATATGTCTGCATGGACAC ATTCCTATAGAAGAGATACAGATTATTCTAGGAAGCCATGTTTTAGACAG TGCCGGCAACTGTACGTGATATTATCGAAGAGCGCTACGTAGCTTCCTTG CATCGTCAAGCACACAACAAGCAATAATACAAACTACTGGCAGTTGTGTA ATATGTTTCGGTCGGGTCGGCGCTGATCTTTTCTTTAAAGGGACCAAAGT GTTCACAAGATCGTGGGTTCGAGTCCAGGGTCAACTGATGAAACTGCCTT CTTGTTTTCCCATACCTGACAACCTGCGTGGTCTGGTGGATAAGCTACAC TGCAAGTACTACTATCGATACTGCTTCTGCAAACTGTGCGTAGTCTGCAC TTACTTCCCCTTCTTTATCGTGCCAGTATATATAGTACTGTATGAGTGCT GTATGTAGTGGTATAGTTGTTGTGTAGTAGTGTAGTAGTAGTGGGATAGT ATCATAGTAGTAGGTAGTAGGTAGTAGGTAGAAATTCTATTAATAGTATG AAACGCCAAAAAAATTAATTAATTCATACTATTTCAAGACATTAATTAAT TTTCACTTTCGTAGGAAACGATATACCAGGGTGTGTATGTTGCCTTCCCT CTACTAGCGGCCTTCTTTCTTACCGCACACAACTCAGTGCCAGTTAGGAG GATCTACGCCTCATGCCCGATCTACTAGTATAATAGGCGTGGCAGTCGTC GTATCGTACAATATGAGTTGGTTTGGGCGGGGTTGATTTGGATTGGGTTG GGGTAGGATTTCGCTCACCCTTCGAGCGCACATTGCACGGGCAACACACC GTGGCGCCTGCTGGTCTACTGGTATGCTATAAATACACGATCATGGCGAA TTACTTGACCAGGAGGCACCCACGACGTTGCCCGTGGAATGTAGGATGAG TATAGTGGACCAACACAGCACAACACAACACAACACAACACAACAGAACA ACAAAAACACCATACGAGTACTGTTTGATATGCAGGCTCTAGAGCTATCA TAGAGCTAGCTCTACGGATTCAACAAATGAAGCAACAACCGTGACTTCCC TGTACAACAGTAACGGGGAAAAGGACCTCGAGAACACTTGTTATTTTAAA ATTACAAATACGCGGATAACGTGAGAGCGTGAGTAAGCACAATTCGATGA AAGTCGACGAGGGAGGCAAGTGCTGCACTCTTCGCGCGATAAAAATGTAA GCACGTACCGTGGTGGAAAGGAGGGAGGAGCGCCTACTATGTGACCCCGG ATCTGAGTTGCGAAGAGAGAAGGAGCTAGAGAAAGAATAGAGCAAAGATA GTAAAATGGGACGGAAAAATAAAATAATAAAAAAAATACTGTACATCAAC AGTGACGTTCCAAACTGGTTCGGGAGCCAGCAGGGGATAATCGCCAACTT CACTATGATGCGTGTGTGATGCTTCGGTCGCTTGAATGCTATCTGTCCTC AGATGTGGTACAATGTATAGCGCAGTAGCTTGACTTGAATAATGGCGAGG AAGTTCATTTGGGCCTCGTTGTCACTTGTACGAGTATATAATAGCGTTCT AGCCCGCATACTCATTAACTGCGGGATGATACGCGCTCGGCAGGATAAAA ACATAAAAACATACTTGTATCAATAGCGGTAGTACATAGAGTAGTATTTA GTATTGAAATGGTAAGAGGGTTGGCTCTATGGTATGAACAGCTCTATGTT GTGATATCCCCCCCCCCCCCCCCCCCCATTATCGAGAAAAATATAGGAGT GGGAAGGGTGCTCCGTCTCGAAAGGGATGCGTGATTGGTCATGGTCAAAT GACCAAGGCAAGCAACAAATGAGTACGCCCCCCCCCCCGCCGGCGGAAGA GTTTTGCGGTACTGTTTTTTTTGCGCGTGTTGCTGTTGTTGCTCGCTTGC TTGGGGTTTACGAACAACCAAAAGCTGTACTTGGTGTTGTGGTGATGGTT TTCTGGTTTGCATGATAGCAACACAGATGCCGTCCACGATATGTTTTTTT TTTTCTCGAGAAAATGCTTTGTTTTTGGAGTTTGATAACCCGTGGGTAGC TGTATTTTTTGTTGTTGTTTTGGTACCTATCATAGTCAGTAAGGTCTACT GTTGTAGCGATATTTCACTGTAAAAATAAGTATTTGTCGTCAAAACACGG TTGATTCGCACGATGCCAGGGACAACACGAACCCTCTGCAACTAGGATGA CGAGGCCAATCGATCGATCGATCGATCGACTGATTGATGGATTGATGTGT TGACTGATTCGTTGATTTATTGATGTATTGATGAAATATTGATTGGTTGA TTGTTGATTGATTGATTGTGCTGGTGGTATGGATCGATGTATTGGTGCAT TGATTGATTGATTGATTCAGTGATGGTGTCGGTGATGGCTACTGCCGGAT AAATCGTGATTTTATTGTGTTTGCAAATATACAGCAATCTGCCGTGACGT TCCAATATAGTTTTCGGAACCCCGAGGATAATCGCCGCAATTTCACCTAT ACTATTACTGCACTTGTGTGATTTTCCGGTGACGTATAGTGTAGAGCTGT GTCGATCCCCAGACAAGAAGGTATAGCAGTACCCGAGCCGTGACTCCCCT GGGTCCTCCCAAGGCTCGAAGTGACACGTTGATTTTTGTATTTTTTTTTT AACTTTATCCTTTGGCGGATGCGTAAAAATGAATCTTGTCCTCACACTGG TTTCTTTGATAAGCTTTTTGAGGGTTGCTCTTTTTTTTTTTGTTCACGTG TGGTGCGTGCGTGGTGTGCTTACTAACCCCCCCCCCCCGAAAAGATAAAT AACGTGTACTTCTCTCTCCTGGTTGTCCCCCTCGACAAAACCACCACCGC ACCGCGAACGACAATCCTCTCGACAGCTACAAGCTGTGGCATCAGTACCT GGGGGAGAGGAGGACCGCCGTGGAGGGCAAGTGCGTGACGGATGCGGCGT GCCAGATCGTGATCAACGCCCACGAGCGAGCGTTGGTGAGTTGTTGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig105:742337..747333-

>mRNA_D-herbacea_F_contig105.556.1 ID=mRNA_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=630bp|location=Sequence derived from alignment at D-herbacea_F_contig105:742337..747333- (Desmarestia herbacea DmunF female)
ATGGCTGCGTCGTCGCTCGGGCAAGACATCAAGGAGTTCTTGGAGAACGA
AAAGGATGTGGAGTTCGAGGAGGAGATTTCTCGCAATCCCTATAGGCTCA
AGTCTTGGTGGAGGTACCTGCTTGCCAAGGAGGGAGCCAGGCGCAAGACT
CGCAACGTGATCCACGAGCGGGCGCTTAAGTTTCTACCCAACAGATGGCT
GCGTCGTCGCTCGGGCAAGACATCAAGGAGTTCTTGGAGAACGAAAAGGA
TGTGGAGTTCGAGGAGGAGATTTCTCGCAATCCCTATAGGCTCAAGTCTT
GGTGGAGGTACCTGCTTGCCAAGGAGGGAGCCAGGCGCAAGACTCGCAAC
GTGATCCACGAGCGGGCGCTTAAGTTTCTACCCAACAGCTACAAGCTGTG
GCATCAGTACCTGGGGGAGAGGAGGACCGCCGTGGAGGGCAAGTGCGTGA
CGGATGCGGCGTGCCAGATCGTGATCAACGCCCACGAGCGAGCGTTGGTG
AGTTGTTGACTACAAGCTGTGGCATCAGTACCTGGGGGAGAGGAGGACCG
CCGTGGAGGGCAAGTGCGTGACGGATGCGGCGTGCCAGATCGTGATCAAC
GCCCACGAGCGAGCGTTGGTGAGTTGTTGA
back to top