prot_D-herbacea_M_contig95.15984.1 (polypeptide) Desmarestia herbacea DmunM male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_M_contig95.15984.1
Unique Nameprot_D-herbacea_M_contig95.15984.1
Typepolypeptide
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Sequence length423
Homology
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BLAST of mRNA_D-herbacea_M_contig95.15984.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.760e-8
Identity = 121/233 (51.93%), Postives = 140/233 (60.09%), Query Frame = 0 
Query:  194 NACLDPTSDDYKCSSSSD--RAIRFFGCGLVDDDVADFAACFEDFGVDTLETLDFGVGNGLTTLPVDVFAVLSNLNWIDFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCVPTTTAEFIEL---DDDGILEDGVCGCTPVEAVMCDDGYTCVPGSTGYTC 421
            N C D TSDDY+C  S D    +    C  VD D AD  AC E FG   ++ +     + LTTLPV VF+ L N+  +D S                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                QC+P++TA  I+L    ++ ILE G C C P EA+ C+ G +C PG+ GYTC
Sbjct:  348 NVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDIS-----------------YTGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELTLSTDVSRFPDVQLQCLPSSTATTIDLWFQPEEEILE-GTCECEPAEAISCEAGTSCQPGTEGYTC 562
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig95.15984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL48_ECTSI3.760e-851.93Leucine rich repeat carbohydrate binding protein n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunM male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 335..358
e-value: 3.0E-5
score: 33.4
coord: 263..286
e-value: 0.28
score: 20.3
coord: 287..310
e-value: 8.7
score: 13.7
coord: 311..334
e-value: 0.095
score: 21.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 264..324
e-value: 2.3E-9
score: 36.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 166..384
e-value: 5.5E-34
score: 119.4
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 222..379
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 222..379
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..422
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.575
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 239..374

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig95contigD-herbacea_M_contig95:44245..58697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunM male2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig95.15984.1mRNA_D-herbacea_M_contig95.15984.1Desmarestia herbacea DmunM malemRNAD-herbacea_M_contig95 35443..60069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_M_contig95.15984.1 ID=prot_D-herbacea_M_contig95.15984.1|Name=mRNA_D-herbacea_M_contig95.15984.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=423bp
MKTQALVFGLFGASFAQAASESITVTEFDTEFKVSRFDDGRSNPYRVTFR
DDDNTRSIYRFNTEGKVAKIKAGSEKYEVTYKSNGDLKKVELTSSRRSLL
VDALSQEEEERLGEHLRRSLYACEDCVEAWDAVCDEGVPTACDLVGYGSP
ISDEANASIEILCNTFGSACSSAGGDEACEGQCEDDGTGGGTTNACLDPT
SDDYKCSSSSDRAIRFFGCGLVDDDVADFAACFEDFGVDTLETLDFGVGN
GLTTLPVDVFAVLSNLNWIDFSGNPLVELPVGVFNGLTSLRNMFLINTEL
QTLPADIFMGLPSLVSLLLFENKLVALPRDLFAPLTELATLSLDNNQLTT
LPEGLFDNNDKLFQLAFERNDMQCVPTTTAEFIELDDDGILEDGVCGCTP
VEAVMCDDGYTCVPGSTGYTCE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp