mRNA_D-herbacea_M_contig95.15984.1 (mRNA) Desmarestia herbacea DmunM male
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Overview
Homology
BLAST of mRNA_D-herbacea_M_contig95.15984.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 2.080e-7 Identity = 121/233 (51.93%), Postives = 140/233 (60.09%), Query Frame = 3
Query: 801 NACLDPTSDDYKCSSSSD--RAIRFFGCGLVDDDVADFAACFEDFGVDTLETLDFGVGNGLTTLPVDVFAVLSNLNWIDFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCVPTTTAEFIEL---DDDGILEDGVCGCTPVEAVMCDDGYTCVPGSTGYTC 1484
N C D TSDDY+C S D + C VD D AD AC E FG ++ + + LTTLPV VF+ L N+ +D S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QC+P++TA I+L ++ ILE G C C P EA+ C+ G +C PG+ GYTC
Sbjct: 348 NVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDIS-----------------YTGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELTLSTDVSRFPDVQLQCLPSSTATTIDLWFQPEEEILE-GTCECEPAEAISCEAGTSCQPGTEGYTC 562 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig95.15984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_M_contig95.15984.1 >prot_D-herbacea_M_contig95.15984.1 ID=prot_D-herbacea_M_contig95.15984.1|Name=mRNA_D-herbacea_M_contig95.15984.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=423bp MKTQALVFGLFGASFAQAASESITVTEFDTEFKVSRFDDGRSNPYRVTFRback to top mRNA from alignment at D-herbacea_M_contig95:35443..60069+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_M_contig95.15984.1 ID=mRNA_D-herbacea_M_contig95.15984.1|Name=mRNA_D-herbacea_M_contig95.15984.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=24627bp|location=Sequence derived from alignment at D-herbacea_M_contig95:35443..60069+ (Desmarestia herbacea DmunM male)back to top Coding sequence (CDS) from alignment at D-herbacea_M_contig95:35443..60069+ >mRNA_D-herbacea_M_contig95.15984.1 ID=mRNA_D-herbacea_M_contig95.15984.1|Name=mRNA_D-herbacea_M_contig95.15984.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=2538bp|location=Sequence derived from alignment at D-herbacea_M_contig95:35443..60069+ (Desmarestia herbacea DmunM male)back to top |